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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0179900 |
Transcript ID | LotjaGi3g1v0179900.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3T934|I3T934_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0179900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25030382..25034081) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGGCACCGCCTCTCCTGATTTCACTACTGCAATATTTTTCAATCTCCTCTTCTAATTGCTCAACCCACATCCCTCAA ATCCTGTAACATTCCCCCTCCATTCCCGCCGCACTTTTCAAATTGCTCAACCTTGACCCGCTCGCTCATCATCACCATCA CGCCAACACTCATTTCTCCACCTCAAACCAAAGGTACGCTAGTCTCACGACCCCAATTTTATTTCAATTTAATTAAGCAT GCATAATTATATGGAAAAAATCTTATAATTTATTAATACTACTAGTGAGAGTATTATAATTGCAGTCAGATAATCATGGT TCAAACTTGCAGTAATAATATCTTGATATCGTTTCTCTCAATCATTTACCAAAGAAATTGACTGATCCATTTCCATGCAT GTACCATTTGCCTATAACCGGCCACTACACAGGACCATACTGTTCTTTCCCAACACGTAATTATAAACTTTATGTAACCG ATACTAATTATTTTCAATATTCTAATTAATAGCTCTTAAATCAACAAGTTCTTTGAATTCTAATTGCTTCTCAAAGTGTA ACGCCTAAAATCCCTTCCATACTTGTCTAACACTATAAATATGACCCTTGTCTATTTCTTCTAAGCCACCAAACAGAACT GAAACCACTCTCAAAGTTACTTACAATCATACCATGATGAAGTCGTGTCCAAAGCTTAGAAACTCCTATGTAATTCCTTT TTTCTTTTTTACATTCAGCTTTTCACGATGCTTTTCTTTTTGTTTCTTCTCAATGTGATTCGACTTTGATTATATCGAAT GCACTTTTCTCTTCTCTTTTCCAGCATTTTTAAAAAAATTGTTTCTAGAATTTTGTTTAGTTGATTCAAGTCAAACATGT ATGATTCCTAAGTAAGGGTCATTGTTCTAGTCATATGAACGAAACACACGGTTGAACCCACAATGATGTGGATGTTCCAG GCATAAACTAGACTAGAAGTAAAGTCAAAATCAAATATGTTTTTCCTTGTCACGGGGTTCTGAAAATTATATCAATTTAA TATATGAAAATTATGCCTCAATAATTGCAATTATCAATTTAAAACAATTTTTGGTTTTCTGCAGGTTGTCGGGGTTATTT TCGCAGTGCTGTTATTTGGATCACTAGGAGTGAAGGTAGCAGAATGCAGAGTAGTAAGAAGGTTACAGGATCTTGAGTAC CCTGCTATCAATTGCAGAAAACATAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAA GGCTTTTCAATCTGCAATCAGCAATCTCAGCCACTATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAAT GGCTCACAGGAAGCTTTAATCTCACCAGCCATTTCACACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTA TCCAGTCTCCTTCTCCCCTTTTCCTGTGGTTAAATTGTTAGATTATTTGGGACATTGATTCCTTGCATTTGATGTAACCC TTATCGGAGCCATCAATATTTAATGGCTCAGATATTTCATCAAGATCGGATGGCTAATATAAACTTAATCTTGACTATTT GAATATGATTTATTTTGTGTATGTCACATGTCCGTTGCACTCTATTTTACTATGAAAGTAGCATTGATCCAAATGTATGT AGCATTCGTTAACACAGTGCAATTGTTGGAAATTTGTTTACCTAATCACATTAATCTCTAACCTATCTTTGATTTCTTGT CACGTTAGATAAGCAGCATTTGACATCAATTGTTAGTTTTTTTTTTTTAATTTTGAATTTTCTCCAAAATAAACACTTCC ATTGACCATTGACCATCATTAACAGGTTGAATCAGGGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGG ATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTACCGGTAAAACTACAAGG CCCATATATTATCATCTCTATTAGAATTTGTTAATATCATGCCTCTTTGGAAAATCATTTTTAATGTCACATGTTTTGAA TCTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAA CTCACCAGGCCTTACATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCCCCATC TTGGTTTGTCCATCCAATTTACAGCAGGTTTGACATTGATTTTCATTTCAATTTATGTTCAATCTTCATGGACCATATGT TCTGTTATGTTATTCTCATGTTCTTGTCACACCTTTCACTGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACC GGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAATTTTGATATCATTTCTATAATTCTAATATATATAGTTTATT TCCACTGGATTTCAATTTAGTCCTTAAAAGTTGGAAATCATGATTAATATGATCCTTGAAGGATGAAAAAAGGAAAAAAT CCATTTTATATCTTTAAAGACTAATTGAAATTTGGTTTCATCTTTCTCAATTTTACCTTTGAATTAATTACATTGGTTGG CCTACCCTATGGGGGTTGGTAAGAACAAAGTAATTTACTCATCTTTATCTTCATCACTTTACTGTGATTTTTTTGTCATT TTAGGCAAAACAATTATAATCATTCCCTTTCATTTGTTTAACCTTTCCATGTATAATCCAAAATATCTATAGTTGGCCTT ATTGTTCACGGGGTTCAAATGACATTTACTTCTCTAACTATTTCACTCAAATTTCAATCATTCTCTAACTATTTTTTCCT CCATTTTACAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAA GTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCT GATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGCGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAA CACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTTAAAGGAATGAACT TGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTT CCTACCATCACTGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAA TGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATG TTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTT CCATCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGAGAGAATGA ATGTATTTTAAATTTTGAATGTAATACAGTAGTGATGATACTGTTATCCATGTAAGAGTTCTGAAAAAACTAAATCAAAG CTATTGTTATGCTATTGTTA
CDS sequence (LotjaGi3g1v0179900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCC AATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCGGTTGACTCTCCCAACACAGATGGAATTGATC CTGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGG GATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCTGATAGTGC TATGATTGCTTTAGGAAGTGAAATGTCTGGCGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAAT CAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTTAAAGGAATGAACTTGTTCACC ATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCAT CACTGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTT TCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGT GTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCATCAGA CAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Protein sequence (LotjaGi3g1v0179900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCSNTRIEDCYIVSGDDCIAVKSGW DEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAVRIKTAVGRGAYVKNIFVKGMNLFT MKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIANDPFTGICISNANIEKVGKKLAWNCTDVHG VTSNVSPEPCALLQEKPGKFDCPFPSDKLPIESVQLKTCSFKSLSLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 282 | 282 | 2.1E-163 | – | |
PANTHER | 1 | 282 | 282 | 2.1E-163 | – | |
Gene3D | 1 | 249 | 249 | 1.5E-67 | ||
Pfam | 2 | 240 | 239 | 3.9E-29 | ||
SUPERFAMILY | 2 | 280 | 279 | 1.44E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0179900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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