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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0179900 |
Transcript ID | LotjaGi3g1v0179900.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0179900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25030490..25033007) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTAAAACAATTTTTGGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGCTGTTATTTGGATCACTAGGAGTGAA GGTAGCAGAATGCAGAGTAGTAAGAAGGTTACAGGATCTTGAGTACCCTGCTATCAATTGCAGAAAACATAGTGCAGTTT TGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCTTTTCAATCTGCAATCAGCAATCTCAGCCAC TATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACCAGCCATTT CACACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTATCCAGTCTCCTTCTCCCCTTTTCCTGTGGTTAAA TTGTTAGATTATTTGGGACATTGATTCCTTGCATTTGATGTAACCCTTATCGGAGCCATCAATATTTAATGGCTCAGATA TTTCATCAAGATCGGATGGCTAATATAAACTTAATCTTGACTATTTGAATATGATTTATTTTGTGTATGTCACATGTCCG TTGCACTCTATTTTACTATGAAAGTAGCATTGATCCAAATGTATGTAGCATTCGTTAACACAGTGCAATTGTTGGAAATT TGTTTACCTAATCACATTAATCTCTAACCTATCTTTGATTTCTTGTCACGTTAGATAAGCAGCATTTGACATCAATTGTT AGTTTTTTTTTTTTAATTTTGAATTTTCTCCAAAATAAACACTTCCATTGACCATTGACCATCATTAACAGGTTGAATCA GGGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTT TGGAACACACCTCACTGATGTTGTTATTACCGGTAAAACTACAAGGCCCATATATTATCATCTCTATTAGAATTTGTTAA TATCATGCCTCTTTGGAAAATCATTTTTAATGTCACATGTTTTGAATCTGTTCATTAGGTCACAATGGTACTATTGATGG GCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACTCACCAGGCCTTACATGATTGAGATTATGTACT CTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGAC ATTGATTTTCATTTCAATTTATGTTCAATCTTCATGGACCATATGTTCTGTTATGTTATTCTCATGTTCTTGTCACACCT TTCACTGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCGGTTGACTCTCCCAACACAGATGGAATTGATCCT GGTAATTTTGATATCATTTCTATAATTCTAATATATATAGTTTATTTCCACTGGATTTCAATTTAGTCCTTAAAAGTTGG AAATCATGATTAATATGATCCTTGAAGGATGAAAAAAGGAAAAAATCCATTTTATATCTTTAAAGACTAATTGAAATTTG GTTTCATCTTTCTCAATTTTACCTTTGAATTAATTACATTGGTTGGCCTACCCTATGGGGGTTGGTAAGAACAAAGTAAT TTACTCATCTTTATCTTCATCACTTTACTGTGATTTTTTTGTCATTTTAGGCAAAACAATTATAATCATTCCCTTTCATT TGTTTAACCTTTCCATGTATAATCCAAAATATCTATAGTTGGCCTTATTGTTCACGGGGTTCAAATGACATTTACTTCTC TAACTATTTCACTCAAATTTCAATCATTCTCTAACTATTTTTTCCTCCATTTTACAGATTCTTGTTCCAACACTAGGATT GAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGAT GCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGT CTGGCGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTT GGTAGAGGAGCATATGTGAAGAACATTTTTGTTAAAGGAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGG TTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATTATAGAGATGTGA TTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCG AATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCC TTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCATCAGACAAACTTCCCATTGAAAGTGTTCAGC TGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
CDS sequence (LotjaGi3g1v0179900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACCAGCCATTTCACACTTTTTCTCCAAAAAGA TGCTGTCATTCTTGGATCCCAGGTTGAATCAGGGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATG CACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTACCGGTCACAATGGTACTATT GATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACTCACCAGGCCTTACATGATTGAGATTAT GTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTG ACATTATAATTCAAGGGCTGACCATTCTTGCACCGGTTGACTCTCCCAACACAGATGGAATTGATCCTGATTCTTGTTCC AACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAAT CAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCTGATAGTGCTATGATTGCTTTAG GAAGTGAAATGTCTGGCGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATC AAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTTAAAGGAATGAACTTGTTCACCATGAAATATGTGTT TTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATT ATAGAGATGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGC ATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGT GTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCATCAGACAAACTTCCCATTG AAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Protein sequence (LotjaGi3g1v0179900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQVESGWPSLPVLPSYGRGRDAPAGRFSSLIFGTHLTDVVITGHNGTI DGQGSYWWDKFHKGQFKLTRPYMIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCS NTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAVRI KTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIANDPFTGIC ISNANIEKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKPGKFDCPFPSDKLPIESVQLKTCSFKSLSLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 351 | 351 | 2.3E-94 | ||
PANTHER | 2 | 384 | 383 | 1.3E-228 | – | |
PANTHER | 2 | 384 | 383 | 1.3E-228 | – | |
SUPERFAMILY | 2 | 382 | 381 | 1.57E-88 | ||
Pfam | 62 | 342 | 281 | 1.5E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0179900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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