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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0180500 |
| Transcript ID | LotjaGi3g1v0180500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Intracellular protein transporter USO1-like protein; TAIR: AT3G11590.1 golgin family A protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|G7IHH1|G7IHH1_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0180500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25110912..25114411) extracted from Lotus japonicus Gifu genome v1.2.
GCGTTAATCAAGATACTACAACAAGCGATAATCACGAGACAAATCATTCATTTCACCGACAGCGCATTAAGTGATAGAAG TTTGACCAATAATATTTTCCATTTGCAAGAGTTCATTTGCTTAGGATGAAAGTGTTAAACCGCTAGCAAACGCTTGATCA CATTGGAAACAACTAGAACAAACAAAAACTATCTTTTCTTTTCTTTTCTTTGATGAATGATGATGACCCACTTCACTAAA TTCAAGGCCAATAGTATCACTTTCATATCACCAAAACATTGGGAAAAAGCCCATGACACTGACCACCACAACATGTACTC TGTTCTGTGAACTCAACACACATCCCTGAGTTCCCTCCTCCAATCTCCAAATTCGAATCGTCAATGTAATGTTGTGATTG ATTGAAACAAATCTCTAAAATTTCGGGACATAAATTCCCCTGAATTTCGCCCTCACAATTCTCACCATGTCTTCTTCATG TAAAACAATCAATCTCATTCCTTCTTCCACCACCTCCTCTGCTTCTTTAGCTCGGAGATATCGATTCAAGCGAGCCATTT TGGTCGGGAAGAAGCAAGGTGGGTGCAGCACTCCGGCGCCGATGTGGAAAACCAGGACAGGATCACCACCTTCTACGGTG GCTCAGGCTCATCACCACCACCGTGAACATTTCACCAAAGCTGCCTTGGCTTCTTCTGGTTCCAGAGAGAAGGAACTTTC TGTATCTGCTAGAAAACTTGCTGCTACACTGTGGGAAATCATTGATTTGCCTCCATCAAGGGTCAAGAAGGAATCAATGA GAAGCAGAGGAAAAGCTAAGCCACGTGTGGCAGATCCTGATTCATCATCTTATAGTCCTTTCTCAAAGGTAAATGACTGA ATTCATATCAAGGTGTTTTTATTCTGGTTCATGGGGTGAATCTGAGTCTGACATGAACTCTGTTTCTTGCTCTGTGATTG AGAGTGCAGAGCATAAAAGGGTTTGAAGTTGATGGTTGCAGAAGAAGAGTGTCAGCCTTATCTCATTCTCATCAACTTCA TTTTGCTGATTACTACTTGAGAGGCCAGGGTGGTGATTTAGTGGAGGTAGAACATAGTATTTTTTCAATCTCAAACCAAT TAGAAATGTGGTAGAGATAGACATATTCATTATGATAGATCATATGAGATTCTGAGTTACTCAAACTTTTTTTTTAACAA ATTAAAACATCTTTGGATCAGCTTCTTTGATCAAAATCAAATTTGACATCTAGAAGCTAATCACAGAAACTTCTACCCAT AATTGATTTTGGTTTTAGAATCCATCCAAGGTCAAGGACCACATATACAACAAGAGTCATATGAATTGGATGTGGTGTTT GTGTTACTATGAATCTGTCTCTGTCTCTCAGATGATAATTTTTCCATGGATAATGATGTGGTCATAACAATGACCTTAGG TCTTGAGAAACTGATAGCCTTTTAAGATTGTACCATTCTATATTATTCACTCATAATGAGGTATGATATGTATAACTTTT TAGGCCTAACCTGAATTCTGATATAGTATGAGTCTAGCCCATGTTCGTTTATTGGAGACCATCAGTTTATGTGCCACTGG AGAAATTCATTCTTACAATTTTTCACGCTCCACATTTACAACACTTGGCGTGCGGGAGTGTGTTAAGGTCTCACGTTAAC AAGTGATATGGCCAAGCAAATCCCTATGTAGGGTAGAGTCATCCTCACTCCTAAGTTAGCTTTTTGGGCTAGAGTACGGC ATAACCCGAACTTTAATAATATTAACATTATTTGTGTATGTAGAGTAGAAATTTGCAATTCATTGAGAATTGAGCACTAA GATAAGGTAAATGTTGATCTCACCAGTTAATGTTGAAATGCAGAAGGTAGGCAATAAGGCAAGAAACAAGAAGAATTGTT GTGTATGCTCGGTACATGGAGTCAAGAACCGTTTGAAGGAAGCTAGAAGTGACTTATCTACATCAAAGAAGCTTCTGAAG GTGTTAAGTCAAATGTGCCTTCAAGAGCAGCATTCATCAAGCATACCCCTTATCATGGCTATGAGCACTGAGCTAGATCG TGTCCACAACCAAGTTGATCAATTGATCGAAGAGCAGAGTTCAAACCAGAGTGGTATTATAGAGCATCTCATGAAGCATT TTGCAGAAGAAAAGATTTCTTGGAAAAGAATGGCTCAGGAAAAGATTGGCGATGCCACGAAGAGGATAGTAGAGGAGCTA GAGGTTGAGAAGAAGCTAAGAAGGCAAAGTGAAAGGTTGAATGAGAAGATTGCAAGAGAAATGGCTAATGTGAAATCTTC TTATCTAAAAGTGTCCAAAGAGCTTGAAAGGGAGAAGCGTGCAAAGGAGATTTTGGAGCAAATTTGTGATGAACTAGCCA AAGGAATTGGGGAAGACAAAGCACAGGTAGAGGAAATGAAAAGGGAATTGGCAAGAGTGCGAGAAGAGGTGGAAAAGGAG AGGGAAATGCTTCAGTTAGCGGATGTTTTGCGCGAGGAAAGAGTTCAGATGAAGCTTTCAGAGGCTAAATATCAGTTTGA GGAGAAAAATGCCGCGCTGGAAAAGTTGAGAAATGAGCTTGAGAGCTTTTTCAGAAGTAAAGAAGAAAAGGTTGATATTA ATCCTGAGTTTAGAAAAATCAAGGATCTCGAGGCGTATTTAAACAAGGCCTTTTCGGGGTTCCAAAATCTAGAGGAAGAG AATGAAAATGACTCGGGTGAAAGTGATCTTCAGTCCATTGAATTGAACATGGACTGTGATAACAAAAGTTTCAAGTGGAG TTATGTTTGTGATAATGTTGTTCAAGAATATGACGCAAAGAGAGTTTCATTTGAAAAAGATGTAGGGAGGAGATCTTTCT CAGAGAGAATCCAGTGGGGGAGTATTTGCTTCAACAAGAAGAGGGACATTATTAAAAATATTCAGCAAAATTGTGATCAG CTTAATGAAGAAACTGAGAGCTATAGCTATAAGCCTGCTCAAAGAAGTGGTCAATTTAGGACTTTGCAGCAGTACATTGA TGGAGAAGCAGGGGAAAATACTCTGGCTTTGGAGGGGCTCAATCTGAAGCAAGAGGCTGAACAAAGCAAAATGAAAGAGT TTTGATAGGTTAGTGTAAAGGTTCTGCTTATTTCGGTTTAAACTGTTAGTGCTTTCTTTTTGTGGTGGAGTTGTTCTTGA ATTTGGAATGTTTAAGGCTCATCACTGTCTTGTGTTTTATGTCAAAAAATTGTAAGTATTGACTAGAACTACACATAGCA GTTTTGGCTCTAATTATTTATTTGTACTGGCTTTTTCTGGCTTCAAATATGATTGATGTTTGAAAAAGCTGTTTAATCCA ATTGGACTTGTTTTGCTGGTTGTAAGCATTCGAGTAAGAGAGATTTCCTTTGTCTCAAACCGAATTGAGTTTAAGCACAA TACTTCCTATAATATTTTTTCCAATAGTCACTTGGGTCATTATGAGATAGAATATTTGAC
CDS sequence (LotjaGi3g1v0180500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTTCATGTAAAACAATCAATCTCATTCCTTCTTCCACCACCTCCTCTGCTTCTTTAGCTCGGAGATATCGATT CAAGCGAGCCATTTTGGTCGGGAAGAAGCAAGGTGGGTGCAGCACTCCGGCGCCGATGTGGAAAACCAGGACAGGATCAC CACCTTCTACGGTGGCTCAGGCTCATCACCACCACCGTGAACATTTCACCAAAGCTGCCTTGGCTTCTTCTGGTTCCAGA GAGAAGGAACTTTCTGTATCTGCTAGAAAACTTGCTGCTACACTGTGGGAAATCATTGATTTGCCTCCATCAAGGGTCAA GAAGGAATCAATGAGAAGCAGAGGAAAAGCTAAGCCACGTGTGGCAGATCCTGATTCATCATCTTATAGTCCTTTCTCAA AGAGCATAAAAGGGTTTGAAGTTGATGGTTGCAGAAGAAGAGTGTCAGCCTTATCTCATTCTCATCAACTTCATTTTGCT GATTACTACTTGAGAGGCCAGGGTGGTGATTTAGTGGAGAAGGTAGGCAATAAGGCAAGAAACAAGAAGAATTGTTGTGT ATGCTCGGTACATGGAGTCAAGAACCGTTTGAAGGAAGCTAGAAGTGACTTATCTACATCAAAGAAGCTTCTGAAGGTGT TAAGTCAAATGTGCCTTCAAGAGCAGCATTCATCAAGCATACCCCTTATCATGGCTATGAGCACTGAGCTAGATCGTGTC CACAACCAAGTTGATCAATTGATCGAAGAGCAGAGTTCAAACCAGAGTGGTATTATAGAGCATCTCATGAAGCATTTTGC AGAAGAAAAGATTTCTTGGAAAAGAATGGCTCAGGAAAAGATTGGCGATGCCACGAAGAGGATAGTAGAGGAGCTAGAGG TTGAGAAGAAGCTAAGAAGGCAAAGTGAAAGGTTGAATGAGAAGATTGCAAGAGAAATGGCTAATGTGAAATCTTCTTAT CTAAAAGTGTCCAAAGAGCTTGAAAGGGAGAAGCGTGCAAAGGAGATTTTGGAGCAAATTTGTGATGAACTAGCCAAAGG AATTGGGGAAGACAAAGCACAGGTAGAGGAAATGAAAAGGGAATTGGCAAGAGTGCGAGAAGAGGTGGAAAAGGAGAGGG AAATGCTTCAGTTAGCGGATGTTTTGCGCGAGGAAAGAGTTCAGATGAAGCTTTCAGAGGCTAAATATCAGTTTGAGGAG AAAAATGCCGCGCTGGAAAAGTTGAGAAATGAGCTTGAGAGCTTTTTCAGAAGTAAAGAAGAAAAGGTTGATATTAATCC TGAGTTTAGAAAAATCAAGGATCTCGAGGCGTATTTAAACAAGGCCTTTTCGGGGTTCCAAAATCTAGAGGAAGAGAATG AAAATGACTCGGGTGAAAGTGATCTTCAGTCCATTGAATTGAACATGGACTGTGATAACAAAAGTTTCAAGTGGAGTTAT GTTTGTGATAATGTTGTTCAAGAATATGACGCAAAGAGAGTTTCATTTGAAAAAGATGTAGGGAGGAGATCTTTCTCAGA GAGAATCCAGTGGGGGAGTATTTGCTTCAACAAGAAGAGGGACATTATTAAAAATATTCAGCAAAATTGTGATCAGCTTA ATGAAGAAACTGAGAGCTATAGCTATAAGCCTGCTCAAAGAAGTGGTCAATTTAGGACTTTGCAGCAGTACATTGATGGA GAAGCAGGGGAAAATACTCTGGCTTTGGAGGGGCTCAATCTGAAGCAAGAGGCTGAACAAAGCAAAATGAAAGAGTTTTG A
Protein sequence (LotjaGi3g1v0180500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSCKTINLIPSSTTSSASLARRYRFKRAILVGKKQGGCSTPAPMWKTRTGSPPSTVAQAHHHHREHFTKAALASSGSR EKELSVSARKLAATLWEIIDLPPSRVKKESMRSRGKAKPRVADPDSSSYSPFSKSIKGFEVDGCRRRVSALSHSHQLHFA DYYLRGQGGDLVEKVGNKARNKKNCCVCSVHGVKNRLKEARSDLSTSKKLLKVLSQMCLQEQHSSSIPLIMAMSTELDRV HNQVDQLIEEQSSNQSGIIEHLMKHFAEEKISWKRMAQEKIGDATKRIVEELEVEKKLRRQSERLNEKIAREMANVKSSY LKVSKELEREKRAKEILEQICDELAKGIGEDKAQVEEMKRELARVREEVEKEREMLQLADVLREERVQMKLSEAKYQFEE KNAALEKLRNELESFFRSKEEKVDINPEFRKIKDLEAYLNKAFSGFQNLEEENENDSGESDLQSIELNMDCDNKSFKWSY VCDNVVQEYDAKRVSFEKDVGRRSFSERIQWGSICFNKKRDIIKNIQQNCDQLNEETESYSYKPAQRSGQFRTLQQYIDG EAGENTLALEGLNLKQEAEQSKMKEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 531 | 518 | 2.4E-155 | – | |
| PANTHER | 14 | 531 | 518 | 2.4E-155 | ||
| MobiDBLite | 106 | 129 | 24 | - | – | |
| MobiDBLite | 106 | 121 | 16 | - | – | |
| Coils | 230 | 250 | 21 | - | – | |
| Coils | 288 | 315 | 28 | - | – | |
| Coils | 348 | 379 | 32 | - | – | |
| Coils | 391 | 418 | 28 | - | – | |
| Coils | 516 | 543 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0180500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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