Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR043424
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0030300.1
n.a. actin cytoskeleton-regulatory complex pan-like protein; TAIR: AT1G50660.1 actin cytoskeleton-regulatory complex pan-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|I1JJ88|I1JJ88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0030300 LjG1.1_chr1 3860555 3868940 +
2 domain predictions
 –
LotjaGi1g1v0734500.1
n.a. Plant/F24K9-26 protein; TAIR: AT3G11590.1 golgin family A protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|V7CZV5|V7CZV5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0734500 LjG1.1_chr1 130818467 130822836 +
2 domain predictions
 –
LotjaGi1g1v0789000.1
n.a. Intracellular protein transporter USO1-like protein, putative; TAIR: AT5G41620.1 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|A0A151UD83|A0A151UD83_CAJCA Uncharacterized protein At5g41620; Found in the gene: LotjaGi1g1v0789000 LjG1.1_chr1 136136549 136140418 +
2 domain predictions
 –
LotjaGi2g1v0437700.1
n.a. Intracellular protein transporter USO1-like protein; TAIR: AT5G41620.1 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|A0A0L9T9T0|A0A0L9T9T0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0437700 LjG1.1_chr2 93426768 93430548 +
2 domain predictions
 –
LotjaGi2g1v0437700.2
n.a. Intracellular protein transporter USO1-like protein; TAIR: AT5G41620.1 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|A0A0L9T9T0|A0A0L9T9T0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0437700 LjG1.1_chr2 93426783 93430685 +
2 domain predictions
 –
LotjaGi2g1v0437800.1
n.a. Lactoylglutathione lyase/glyoxalase I family protein; TAIR: AT5G41650.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|Q15283|RASA2_HUMAN Ras GTPase-activating protein 2; TrEMBL-Plants: tr|G7KAQ0|G7KAQ0_MEDTR Lactoylglutathione lyase/glyoxalase I family protein; Found in the gene: LotjaGi2g1v0437800 LjG1.1_chr2 93431555 93433184 +
2 domain predictions
 –
LotjaGi2g1v0437800.2
n.a. Lactoylglutathione lyase/glyoxalase I family protein; TAIR: AT5G41650.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|Q15283|RASA2_HUMAN Ras GTPase-activating protein 2; TrEMBL-Plants: tr|G7KAQ0|G7KAQ0_MEDTR Lactoylglutathione lyase/glyoxalase I family protein; Found in the gene: LotjaGi2g1v0437800 LjG1.1_chr2 93431555 93433184 +
2 domain predictions
 –
LotjaGi3g1v0180500.1
n.a. Intracellular protein transporter USO1-like protein; TAIR: AT3G11590.1 golgin family A protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|G7IHH1|G7IHH1_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0180500 LjG1.1_chr3 25110912 25114411 +
2 domain predictions
 –
LotjaGi3g1v0390100.1
n.a. Intracellular protein transporter USO1-like protein, putative; TAIR: AT5G41620.2 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|A0A0R0FVK0|A0A0R0FVK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0390100 LjG1.1_chr3 78808029 78812184 +
2 domain predictions
 –
LotjaGi3g1v0390100.2
n.a. Intracellular protein transporter USO1-like protein, putative; TAIR: AT5G41620.1 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|I1KI11|I1KI11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0390100 LjG1.1_chr3 78808036 78812286 +
2 domain predictions
 –
LotjaGi3g1v0474700.1
n.a. Plant/F24K9-26 protein; TAIR: AT3G11590.1 golgin family A protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|V7AHW0|V7AHW0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0474700 LjG1.1_chr3 89124722 89128569 -
2 domain predictions
 –
LotjaGi4g1v0432100.1
n.a. Potassium-transporting ATPase potassium-binding subunit; TAIR: AT1G64185.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|A7ZJ81|KDPA_ECO24 Potassium-transporting ATPase potassium-binding subunit; TrEMBL-Plants: tr|A0A1J7GVA9|A0A1J7GVA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0432100 LjG1.1_chr4 80668119 80670049 +
2 domain predictions
 –
LotjaGi4g1v0432100.2
n.a. Potassium-transporting ATPase potassium-binding subunit; TAIR: AT1G64185.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|A7ZJ81|KDPA_ECO24 Potassium-transporting ATPase potassium-binding subunit; TrEMBL-Plants: tr|A0A1J7GVA9|A0A1J7GVA9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0432100 LjG1.1_chr4 80668214 80668849 +
2 domain predictions
 –
LotjaGi6g1v0167600.1
n.a. actin cytoskeleton-regulatory complex pan-like protein; TAIR: AT1G50660.1 actin cytoskeleton-regulatory complex pan-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|K7MQW8|K7MQW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0167600 LjG1.1_chr6 45211950 45216927 -
2 domain predictions
 –
LotjaGi6g1v0294900.1
n.a. actin cytoskeleton-regulatory complex pan-like protein; TAIR: AT1G50660.1 actin cytoskeleton-regulatory complex pan-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|K7MAT9|K7MAT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294900 LjG1.1_chr6 61315568 61319108 -
2 domain predictions
 –