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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0185000 |
| Transcript ID | LotjaGi3g1v0185000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G06390.1 FASCICLIN-like arabinogalactan protein 17 precursor; Swiss-Prot: sp|Q66GR0|FLA17_ARATH Fasciclin-like arabinogalactan protein 17; TrEMBL-Plants: tr|K7LVV1|K7LVV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0185000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25921892..25924109) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGCCGCATCTATGGCTTCACAGTTCCTCTCCTCCTCCTTCTCCTCCTCATCCCCACTTTAGCATTACCGGAGAA TCCAAAAACACCTTCATCAACGAGTCAGATAAACTCCAACTCAGTCCTGGTTGCTCTTCTTGACTCGCATTACACTGAAC TCGCTGAGCTTGTAGAAAAGGCCATGCTTCTGCAGAAGCTAGAAGACACCGTCGCCGCCCACAACATCACCATCTTCGCC CCCACCAACGAAGCACTGGAACGCAACCTCGACCCTGATTTCAAACGCTTCCTCCTCGAACCCGGTAATCTCCACTCCCT CCAGACCCTGCTTTTGTTTCATGTCATTCCGACCCGAATAGGATCTGATTACCCACACGGGTCGACCCGTCATCTCACCC TCTCCAACCACCACCTCCGCCTCAAGAAGAATCTCACCGCCGGAGACTGGACTGTCGACCGGGTCACGGTAACTCACCCG GAAGTCGTGACCCGACCCGATGGTGTCATACATGGAATCTCTCGCCTTCTAGTTCCGCGTTCCGTCGAGGACGAATTCAA CCGCCGACGGAATCTCCGCGCCATTACCGCCGTGAAGCCAGAGGCCGCGCCGGAGGTTGACCCCAGAACCCACCGATTGA AGAAAACACCTCCCGCGGCGAAACCCGGTTCCTCGCCGGCACTCCCAATCTATGAAGCTCTTGCCCCAGGACCCTCTCTT GCTCCGGCGCCAGCTCCGGGCCCTGGTGGCCCCCACCACCACTTCAACGGCGAGGCGCAGGTGAAGGATTTCATCCAAAC CCTGCTTCACTATGGCGGGTACAACGAGATGGCTGACATTCTGGTGAACCTTACGTCGCTGGCTACCGAGATGGGTCGTT TGGTGTCGGAGGGTTATGTTCTGACTGTATTAGCTCCGAACGATGAGGCTATGGCGAAGCTGACGACGGAGCAGCTGAGC GAACCGGGTGCGCCGGAGCAGATAATGTACTACCATTTGATACCGGAGTATCAGACGGAAGAGAGCATGTACAATGCGGT GAGAAGGTTCGGGAAGGTGAACTACGATACCCTGCGGTTGCCGCACAAGGTGGTGGCTAAGGAGGCTGATGGGTCGGTCA AGTTCGGCCATGGAGACGGGTCGGCTTATTTGTTCGACCCGGATATCTTTACCGATGGCCGGATCTCGGTCCAGGGGATT GACGGGGTTTTGTTTCCGATGGAGGAGGCGCCGGAGGAGGTTAAACCCGATTCGCAGACGGGTCAACCCGCTAAAGTGGT GGTTAAGCATAGAAGAGGTATGTTGTTTTTTTCTCTACATGTGGTTTTTAGTGGACTTTGCTTTTCTTGGTTTGTTTAAC CTTGCTGAATGGACTACATAGTTTTGTTTAATTAGATTTTAAATTGGTGTTAATTTGGGGAAGTTAGTTGAAGTTATGGT TTGAGATTAGTTTTGGGTGTTGTGGTTTCAAATTGTAAATGGAAAAGTTGAGGTGTGTTAATTAAATGTGACATTGGCTT CCCTTGGGGTAGAAAACCTAATCTAGTGAAGTGAGTGAAGGAATAGGTATTATGTACTACTATCTAGTATCTTCAATAGG GATTTAGCACATTACGGTGTTCTTTAAATCACAATCGTTGAATTTTCAATTAATGACTGTGATGACATGCTTTACTCTGC CTCATTTTAGAAGAGTCAAATCCCTTCAATTGAGCGCTTGGAATAGTGCTCGATGGAATTTGTTGGCGTTGAGAAATTAG ATCCAGAGACTAGTGACTTGCATTTGGTCTAAGTAATATGGCTTTGCTAGTTATTACAACCAATGCCAAGATTTTTCTTT TTAGCCTTGCTATTTTGTGATCTTTTTTTTTTTGAACAGGCTCTTTTGTGATCTTATGTCCATATCCATGTGTTTTGATC ATGTATTTATTCGTTACTTTCCTCATATTCAAAGAGCTTCTGAGCTCAATCATAGTTGTTTCCATCTTTACAATATCAAA ATGTACATCGCCTAGGAAAATTATGATTTTCCCTTGTAGTGAGTTGTAAATATCTTTTCACGTGCTAATGTGCATGAAGC ACTTCTTTATCTCTTCCGTGGTACTTTTATAATTGATTTAATATTGAAATGAATGTTCTTGCAGGAAAATTGTTGGAAGC AGCATGCAAGATGCTTGGAACCTTTGGACAGCATTCTAGATTCTCCTCTTGCCAATGA
CDS sequence (LotjaGi3g1v0185000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCCGCATCTATGGCTTCACAGTTCCTCTCCTCCTCCTTCTCCTCCTCATCCCCACTTTAGCATTACCGGAGAA TCCAAAAACACCTTCATCAACGAGTCAGATAAACTCCAACTCAGTCCTGGTTGCTCTTCTTGACTCGCATTACACTGAAC TCGCTGAGCTTGTAGAAAAGGCCATGCTTCTGCAGAAGCTAGAAGACACCGTCGCCGCCCACAACATCACCATCTTCGCC CCCACCAACGAAGCACTGGAACGCAACCTCGACCCTGATTTCAAACGCTTCCTCCTCGAACCCGGTAATCTCCACTCCCT CCAGACCCTGCTTTTGTTTCATGTCATTCCGACCCGAATAGGATCTGATTACCCACACGGGTCGACCCGTCATCTCACCC TCTCCAACCACCACCTCCGCCTCAAGAAGAATCTCACCGCCGGAGACTGGACTGTCGACCGGGTCACGGTAACTCACCCG GAAGTCGTGACCCGACCCGATGGTGTCATACATGGAATCTCTCGCCTTCTAGTTCCGCGTTCCGTCGAGGACGAATTCAA CCGCCGACGGAATCTCCGCGCCATTACCGCCGTGAAGCCAGAGGCCGCGCCGGAGGTTGACCCCAGAACCCACCGATTGA AGAAAACACCTCCCGCGGCGAAACCCGGTTCCTCGCCGGCACTCCCAATCTATGAAGCTCTTGCCCCAGGACCCTCTCTT GCTCCGGCGCCAGCTCCGGGCCCTGGTGGCCCCCACCACCACTTCAACGGCGAGGCGCAGGTGAAGGATTTCATCCAAAC CCTGCTTCACTATGGCGGGTACAACGAGATGGCTGACATTCTGGTGAACCTTACGTCGCTGGCTACCGAGATGGGTCGTT TGGTGTCGGAGGGTTATGTTCTGACTGTATTAGCTCCGAACGATGAGGCTATGGCGAAGCTGACGACGGAGCAGCTGAGC GAACCGGGTGCGCCGGAGCAGATAATGTACTACCATTTGATACCGGAGTATCAGACGGAAGAGAGCATGTACAATGCGGT GAGAAGGTTCGGGAAGGTGAACTACGATACCCTGCGGTTGCCGCACAAGGTGGTGGCTAAGGAGGCTGATGGGTCGGTCA AGTTCGGCCATGGAGACGGGTCGGCTTATTTGTTCGACCCGGATATCTTTACCGATGGCCGGATCTCGGTCCAGGGGATT GACGGGGTTTTGTTTCCGATGGAGGAGGCGCCGGAGGAGGTTAAACCCGATTCGCAGACGGGTCAACCCGCTAAAGTGGT GGTTAAGCATAGAAGAGGAAAATTGTTGGAAGCAGCATGCAAGATGCTTGGAACCTTTGGACAGCATTCTAGATTCTCCT CTTGCCAATGA
Protein sequence (LotjaGi3g1v0185000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGRIYGFTVPLLLLLLLIPTLALPENPKTPSSTSQINSNSVLVALLDSHYTELAELVEKAMLLQKLEDTVAAHNITIFA PTNEALERNLDPDFKRFLLEPGNLHSLQTLLLFHVIPTRIGSDYPHGSTRHLTLSNHHLRLKKNLTAGDWTVDRVTVTHP EVVTRPDGVIHGISRLLVPRSVEDEFNRRRNLRAITAVKPEAAPEVDPRTHRLKKTPPAAKPGSSPALPIYEALAPGPSL APAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLS EPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVNYDTLRLPHKVVAKEADGSVKFGHGDGSAYLFDPDIFTDGRISVQGI DGVLFPMEEAPEEVKPDSQTGQPAKVVVKHRRGKLLEAACKMLGTFGQHSRFSSCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 456 | 456 | 3.0E-258 | – | |
| PANTHER | 1 | 456 | 456 | 3.0E-258 | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 456 | 433 | - | – | |
| SUPERFAMILY | 31 | 180 | 150 | 1.44E-19 | ||
| ProSiteProfiles | 38 | 177 | 140 | 17.291 | ||
| Gene3D | 39 | 180 | 142 | 2.5E-18 | ||
| Pfam | 50 | 179 | 130 | 5.1E-20 | ||
| SMART | 77 | 180 | 104 | 2.4E-15 | ||
| MobiDBLite | 199 | 254 | 56 | - | – | |
| SUPERFAMILY | 240 | 407 | 168 | 4.84E-19 | ||
| ProSiteProfiles | 261 | 389 | 129 | 10.864 | ||
| Gene3D | 274 | 409 | 136 | 2.3E-7 | ||
| Pfam | 286 | 406 | 121 | 2.4E-7 | ||
| SMART | 302 | 407 | 106 | 3.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0185000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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