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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0185400 |
| Transcript ID | LotjaGi3g1v0185400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Condensin complex subunit 2; TAIR: AT2G32590.1 condensin complex subunit; Swiss-Prot: sp|Q564K3|CND2_ARATH Condensin complex subunit 2; TrEMBL-Plants: tr|A0A151RM81|A0A151RM81_CAJCA Condensin complex subunit 2; Found in the gene: LotjaGi3g1v0185400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25975302..25982172) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGGAGGTAACAACACTTCCTTCTCTAATCCAACTGCATCAAAACCATGAACCCAGAATCTCCCTCACACATCCGCA CTTCAATGCCGGAAACCACCGTAAGCCCTAATCCCACGACGGCGGCTCCCAGCAAGAGGCTTCCCGTCGCCGCCCGCATA CTTTCTCCGACGTCGCCGGTTTTCATCGGCTCCAACGACGACCAGGTTGAACGTGCCCAAGCCCGCGCAGCCCGTGCCAC CGCCATCCGCCGCAAGTCCCTCGCCGCCGCCGCGAACTTCCCCTCCCGAGACCCCGATTCTGATCCTTGTCTCACCAAGG ACCAGATTCTCGACTTGTTCCACAACTGCATAAAGCTTGCCGCCGAAAATGTACCTAGTTTTTCAATTGCATATATTGCT TGTTTTATCAAGGGTTTCTTAGCATTTTTCTTTACTTGTTAATTTGTGTGCAGAAAATTAATCAGAAGAATACATGGGAG TTGAAATTGATTGATCATCTTACGGATTTCATAAGGACTGAAGAAGAAAGCGATGTAGAGACCAACTTTCAAATTGTAAG TTTGGTTGTTTGTAGTTTCACTTTTCAGTTCCAAACCAACTTTGATTTTGAGACTGATATGAAAAGAACATCACCTTTCT AGGGCACTGATTGTTTTTACCTTTTAAGGGTTCGAATTTCATGAATTGTGCCTTTTTTGGGGAGGTTCATTTATTGTTTG TATGGTATTACTTTTTAGGTTTAAGTAACTTTTTAGTGCCAATTTTACACTCAAATTTGGTTTAGGTCATTACCATCTAG TTTTTATGATATTGGCTCCTACTTTAACAACTAATTTGGGTTTTACTCCCCACATTATAATATCTCCTAGTTAATGGGTG ATTTGGCTAAGAAAGGGGCACGTTACCATTGCGACATGTCCACGACTAATCTTATATGGTCTACTTTGCTGGGAAGTCAG ATATGATAGCTAACACTTTTAATATAAAAAAATTCTTGGGGATTGAGTTTCTTAGAGTGATTTTGTTACATAAAAAGAAC TAGCTATTAAATCTGATTTGAAAGCAAAATTTGCCACATAGGATTACTCTGAACATGTGGCAATGGTGACATGTCACTTT GTTAGCCACATCACTAGTTAATAGTGAGAAATTATAAAGCAAGGACACAAACCAAAGTTGTATGTAAAAGTAAGAACCAA AACCATGAACATTAGATGGTAAGGACCAAAACAAAATTTGACTGTGAAATGGAGAACTAAAAACTTTCAAGTCTTCTTTA TATGCACTTTCTGGCAATTATGGAATGTACAATGATTTTAAGTCCACATAATTAAAACTGGCACAAAACAATTTTGTCCC TCCACCAGATATCCAGAATTAATTTTTCTCTTATAATTGTGCAGATTGATTTGGAAGGTAAATATGCTATTGCTCAGATA ACTCTTATACTAAAAGCAAATTCATGCACATATACATGTTATATTCATTGATTTTTTTATCTGGGCAGGCAAGCTGCACT CTTGAAGCTGGAGTCAAAATTTATTCACTAAGGGTGGACTCAGTGCATTCTGAGGCATATAAAGTCCTTGCTAGAATGAA CAGAGTCGGCCAAGAAGCTGAGGAAGGTTATATTATTTACCTCTTGTCAAGCCTAGTGTATCTGAAATTCTGAACCTTTT TTCCCCCTTTATAGAAATATGCCTTGCCCTTTGGTTTGTGTATTGGGTATGTGTGGGGATTGGTTTTCTTCCTTAATTCT GCAATTAATTGTATAACAAGTTACCGAGTTTTGCTTAATGTTTGATATCTGCTCACACAGTGATCCCAAAAGCCAAAGGC TAGTCACCCACCCTAGCTCAGTCCTAGAATCCCAAGTGACCATGATTCGCTCTTTTGACCCTAATCCTCTTATTAGGTGT GTGGTAGTAATGTCTCACTCATTAAATGTGTACAAAATCATTCCTTAGTTGTCTCTCGTAGTTATAGTCTTAATTGAGTT CCTGATTTCCATGGATATTGCCAATAACATAGCAAGGAAGTTGGCCATGATTCACGCGCGGACATAGTTCAGTCTCCCTG ACAGAACACAAGCCTGGAAAGCACTGAACCTTGTAAGGCGAAGAGTGACTAGGTGGCATTGACCATTGAGTTGATTGCTG GTCAGACAACCTTCATAGATGACACAGCTATGTCTGTTTACCCTTATGAGGGGACAGAAAGATATTCACGTCACAGGGAG GAAGCTTTTGGGGATGGAAGAGAAGGATAATGAGGCTAATGAGCGTGAAAAAGAGATCGAAGAATTGAAAGTCAAGCTGT CTGAACGAGAGGTTGTAAAAGAAAAGATGGACACCTGTATATAGAGTTTAAGTCGGACTTTGAAGGAGAAAGAAGAACAC AACCTTAGAGATTGTTAAAATAAAAACTGAGACTGTTGAACGTAAATGCGTGATTTCTGACCAGTATAGAACGGGTTTTG ATTTAGCCTTGAGCCAGATTTGCTTCCTATAATCCTATGTCTTGAATTAGATCTGAGCAACGTCGATCTGTTCAAAGTCA TCGAGGATGAGAAGCTGGTCGATCCTACATCTGAGGCATTGTCCTTTCTATGTTAAGCTCATTTTTTTTGAGTTTATTTA TAGCCATCTTTTTTTGCAAATTCTATAATTTTGAACAGTGTTTTAAGATGTTACTAGTACAGTGATTGTAACTAACAACA AGTGTAACTTGGAGGATTCTTACATCTATGTGTCTTCCTGGTTGGGAAAATTCGTCTTCCTATCACCATTGCCTTTGACC AACCTGACCTCTTGGTTTCCAACCAACTTGCGTTATGTTTGATTTTAATCAAGATTTTTGCTTGAATTTTTTTAAAGACT TTATGCTTGGATTTGTTAGTCTTGTGCATAGGTTTCTGATAGGTTTAAACAAGTTTACACTAGGAGAAGGGCCCAAGTGT GACCTTACTAAGTGATTAGGGACTGAAATGTAATAAATAATTAGCTGGTTAGTGTTTAGTTGACAGCTGTTGCCAGCTGT AGGCAGTTAGAGGAGTTAACAGTTGCAGGTATGCAACTTTGTAGAATAAAAGGGGAAGTAGCTTGCAGAGGAAGGTATCG AAATTAGAGTTCACTAACTGGTTGTGGAACCAGAGAGATCGAGGGATCTCTAGGAAACCCTAGTTTCAGTGTTCTTCCCC AATTTCCCTGCAATTCCCTGAATCCCTAGTTCAAGTTACAAATTGAACTCTAGATTGTAATCCCAGTTTCAGTTCAATAT CATTCACTGCAATTACCAGTGTTGTCAGTTTCCCTAAGATTTTATGCTTGATTCAACAATCAAGGCTTGTGCTTGGATTT TCCCAAGGCTTCTGCTCGACTTGTAATGTTTATTCTTGACGTCAGCTAAGGTCGTTTCATCACCGGTTGCTTTGGTATCG GCCATCTTCTTGGAATCTCTCTTCCTCCCGTCCTGTTCTCAAGCCAGGTTGGCCACCTGATTTGCAATAACTGATTCTGT TGCCGCAAATCAGCTAGGTTGGTCACCAAGTTTCACAGCAATTCCTCCAAAATCCCTCTTTCCCCCATTCAAAACTGGAA CCACCTCCGTTTTGCGTTAGAACCATCACTCCTTCCTTTTGCTTTGAAATCAAATTTGTCTTGAGAACCTGGTAAAAGCT TTACCAAGGCCCCACAATGGTGCCAATGTTCTTCCAGTGTTCCCAAAAGACCAAGCTAGGCAAGTCACCCACCCTAGCTC AGCCCTACAATACCCAAGTGACCGCGATCCACCCTAACTGCGTATGCACTCGGCAGCACATTAGTGTTGGTTTTTTAACT TAAATTTTTTACTGGCTCTAATGTTGTGTCTCTATGTTCAGACTCTACTCTGGATAGTGTTAATGCTGAAGATGGACATG AAGAAAGCAAGAAGGGGATTGACAAAAAGGTCGATTCTTTGGATCTCTAGATTGGACTAGACTAAATAATCAAACTGTTT GCTGAGTTCTAAATGGTGTTTGTTCATGCAGTTGTCACCCTTGTCAACATTGGAGTCATCATTCGAGGCTCTTAATGTAA AGAAGTTTGATGGTGATCTCAAATCTTATTCTATTCATGTTACTTATTGGTGTGTGGATTGAGGTTGGTGCTGACAGTGT TTTTTCAGTTGCATTTGCTGTGGATCCCCTCTATCGCCACACATCAGCACAATTTGACGAAGGTGGAGCTAAAGGTCTAT TGATGAATAATCTCGGTGTATATGGTGGATGTAGGGTACTCTTTGATTCACTAGAAGTTCCAGGGAAGTGCATAGCCAGT CAAAGTGAACAGGACATATCAGATACAATTGATCTTTCTTTTCTCAGAGGTATGTTGCCTTTTCAGAAGTCTGGCAAAAC TGTTGCTGCATTACTTATAGAACCATTCAATATGGACTGGGACTTACTTGTCTTCTTTATAGATTGTATTGAAGAGATGT TATTGAACATGCGTATGAAGGATGAAATCTCTCCAACTCTCCGGGTTATAGTGAATCAATTTGATGAAAATAATAGAAGG CCTTCCGATTTTGAATTTTCTGGCCAGAAATCAGCTGAAGAGTTTGGTGTAGATATTGATTGTTCAATTGCAGCTGAAAG AGGAGAATATGAGAACTTCCCGTCTTGGTGTAATGATCATGATAACCAAACATTTGTTGCTGAACAGGGCTCTAATGACG CAGAGCCAAGTTTTTCAAGCTATCCTCAGGTTTTGTAATGTTTCAGCCCTTGAATGTCCATGCCTGTCTTGGAAGAGATT AAAAAAATGACACTTTTGTATCATTATGTGAGTAATTGATGGACCTTTTATCATATTGTAGGAAAAAGAACCTTTTCCTT CCCAAGATTCAGATATGGATGGAAATTTTGAAAATGTTGATGAGTATATATTTCTCAGTCTGGGTCTTAGGTCAAAGAAA AATGCATGGGCAGGTCCTGACCATTGGAAGTATGGCAAAGCTAAAGGTGGGGCATTGGAGGTCAGTTAGAGATTCTAATT GTTATATATTGAGAGTTCAATGTGTTAATCAATTTAGAATCTCTTTTTGGGCTCAGAGTCAGTTGCTCGTTGTACTTCTG AAGATGATTCGACATTGGAAACTAGGCAGCCAAGGGCTAAGAGACAGGATGAAGATGATCTAGAATTCACAAGTTGTCTT GAGACAAAATTTCCAGATATCTTTTGTCCTCCCAAGAATTCCAAATCGTTACTGCTCCCTGAAAATAGACCACCTTGTGT TACAAAACTTCCGGAGGACTGCCACTATGAGCCACAGGATCTTGTTAAGCTATTTCTTTTGCCTAATGTAAAGGTATTTT GTTTAAGATATAAAAATTAGTTTCACATATCTTAATTACTCAATCCGGAGCAATATTTATTTGTTTTTCTGATGCTATCT ATTCTTTCTTCAGTGTCTTGGGAGGAGGGCAAGAAAGTTATCAGGTGGTATGTGCTATTTTGATCCTAACATATATATTT TTTACTTTTTATATTTGTCTTTCGATACCGACATTTGATTGTTTTCATTTATGCTAGATTGCATTTGAAACTTGGGTGTA TTTGCAGATGTTTCTGAAGAACAAGGCAATGACTATGAATCATTCCCTTCCTGGGATAATGGAGGTGTTGGTGATGGCGA GTATGATGGTGATACGCACAGTGACATAGATGACCCTAGCACACTTATTTCTCAGCCTCGTCGGGTGGGTTTAAGTCTCC TGAATAATTTACGTCTGTTCTCTTGATATTTGACTACTTTGGGTATCTTGCATGCTGATAAAAGGATGATATCATTCATA AACACATAAATTCCTTTATCATCAATTTTAATTTCACAGTTTTGTCAAAAGTTGTTGTAGTTAGGGCAGAAGTTTGATAA TTTCCAAATAACGCAGGTCAATAAAATTGAAGTCGACTATGACAAAACATCCAAACAAGTTGATGTTCAGGCACTGAAGA TTGCTCTTTGGGACCATATTCAAGAATCTATTCAACTTCATGTTCCGGTATGTAAGGTTTCATCTTTTCTTGAAAGGTCT TTTCTGCCTGGTACTGTTTATTAGTTATAGACTTTCAAAACTTAGTAATGAGTTCCATTCTAGGTTTCCCTCACTAAAAA AAGCTTACTGCAGTAGGTTTATTTTATTACAAACCGTGTTCAGGCATTGTGACTCTTGTAATGCTAATGCTGTGTGTTTT TGCTTTACTGTCATATGTCCCTTGATAGTCAATTTTATCCTTTGCTCAATGAAGTTCAGTGGCAAGTTCTGATTCTAACC TCAACTGTTTTCTGCACCTTTCTTTATTATAAAGGGTGAAAAAGAAACGGTATCTTTCAGGGATATGTTGACCAACTTTC CTAGCTGCAATGCTGCTGCAACTGTTACTGACATATCTCCGCATTTGTGTTTCATATGCCTATTGCATTTGGCTAATGAG AAAGGGCTGAGCATCGAAAACTGCCCCAACTTGGATGATCTAAGCATATATATGCCTACCTTATGTTGATGCCTCTGGAA GTGGAGCAGTTTAGATACTGCTTCATTTCAGGAACTAGGAAATAGATTGGCAAGTATTTGTATGCAGTTCTCTTGCTTTG ATGCTTTTATATGTGCAGAAATCCTTACTTTTGTTCATAGGCTAGACCTCATTACTGAACTTCTAAAACATTTTTAGGAT GATGGATGAGTAGAAAATTGTAGATAGCGGTTTTTTTTTTGGCTGTAAAAATGGATGGAATATATCAAAGACAATTATTA GTCCACTGGTTATTGGCTGTAACTGAAGACATCATATGCTATTGTTCGGATGTAGAATTCCCAAACCATAT
CDS sequence (LotjaGi3g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCAGAATCTCCCTCACACATCCGCACTTCAATGCCGGAAACCACCGTAAGCCCTAATCCCACGACGGCGGCTCC CAGCAAGAGGCTTCCCGTCGCCGCCCGCATACTTTCTCCGACGTCGCCGGTTTTCATCGGCTCCAACGACGACCAGGTTG AACGTGCCCAAGCCCGCGCAGCCCGTGCCACCGCCATCCGCCGCAAGTCCCTCGCCGCCGCCGCGAACTTCCCCTCCCGA GACCCCGATTCTGATCCTTGTCTCACCAAGGACCAGATTCTCGACTTGTTCCACAACTGCATAAAGCTTGCCGCCGAAAA TAAAATTAATCAGAAGAATACATGGGAGTTGAAATTGATTGATCATCTTACGGATTTCATAAGGACTGAAGAAGAAAGCG ATGTAGAGACCAACTTTCAAATTGCAAGCTGCACTCTTGAAGCTGGAGTCAAAATTTATTCACTAAGGGTGGACTCAGTG CATTCTGAGGCATATAAAGTCCTTGCTAGAATGAACAGAGTCGGCCAAGAAGCTGAGGAAGACTCTACTCTGGATAGTGT TAATGCTGAAGATGGACATGAAGAAAGCAAGAAGGGGATTGACAAAAAGTTGTCACCCTTGTCAACATTGGAGTCATCAT TCGAGGCTCTTAATGTAAAGAAGTTTGATGTTGCATTTGCTGTGGATCCCCTCTATCGCCACACATCAGCACAATTTGAC GAAGGTGGAGCTAAAGGTCTATTGATGAATAATCTCGGTGTATATGGTGGATGTAGGGTACTCTTTGATTCACTAGAAGT TCCAGGGAAGTGCATAGCCAGTCAAAGTGAACAGGACATATCAGATACAATTGATCTTTCTTTTCTCAGAGATTGTATTG AAGAGATGTTATTGAACATGCGTATGAAGGATGAAATCTCTCCAACTCTCCGGGTTATAGTGAATCAATTTGATGAAAAT AATAGAAGGCCTTCCGATTTTGAATTTTCTGGCCAGAAATCAGCTGAAGAGTTTGGTGTAGATATTGATTGTTCAATTGC AGCTGAAAGAGGAGAATATGAGAACTTCCCGTCTTGGTGTAATGATCATGATAACCAAACATTTGTTGCTGAACAGGGCT CTAATGACGCAGAGCCAAGTTTTTCAAGCTATCCTCAGGAAAAAGAACCTTTTCCTTCCCAAGATTCAGATATGGATGGA AATTTTGAAAATGTTGATGAGTATATATTTCTCAGTCTGGGTCTTAGGTCAAAGAAAAATGCATGGGCAGGTCCTGACCA TTGGAAGTATGGCAAAGCTAAAGAGTCAGTTGCTCGTTGTACTTCTGAAGATGATTCGACATTGGAAACTAGGCAGCCAA GGGCTAAGAGACAGGATGAAGATGATCTAGAATTCACAAGTTGTCTTGAGACAAAATTTCCAGATATCTTTTGTCCTCCC AAGAATTCCAAATCGTTACTGCTCCCTGAAAATAGACCACCTTGTGTTACAAAACTTCCGGAGGACTGCCACTATGAGCC ACAGGATCTTGTTAAGCTATTTCTTTTGCCTAATGTAAAGTGTCTTGGGAGGAGGGCAAGAAAGTTATCAGGTGATGTTT CTGAAGAACAAGGCAATGACTATGAATCATTCCCTTCCTGGGATAATGGAGGTGTTGGTGATGGCGAGTATGATGGTGAT ACGCACAGTGACATAGATGACCCTAGCACACTTATTTCTCAGCCTCGTCGGGTCAATAAAATTGAAGTCGACTATGACAA AACATCCAAACAAGTTGATGTTCAGGCACTGAAGATTGCTCTTTGGGACCATATTCAAGAATCTATTCAACTTCATGTTC CGGTATGGTGA
Protein sequence (LotjaGi3g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPESPSHIRTSMPETTVSPNPTTAAPSKRLPVAARILSPTSPVFIGSNDDQVERAQARAARATAIRRKSLAAAANFPSR DPDSDPCLTKDQILDLFHNCIKLAAENKINQKNTWELKLIDHLTDFIRTEEESDVETNFQIASCTLEAGVKIYSLRVDSV HSEAYKVLARMNRVGQEAEEDSTLDSVNAEDGHEESKKGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRHTSAQFD EGGAKGLLMNNLGVYGGCRVLFDSLEVPGKCIASQSEQDISDTIDLSFLRDCIEEMLLNMRMKDEISPTLRVIVNQFDEN NRRPSDFEFSGQKSAEEFGVDIDCSIAAERGEYENFPSWCNDHDNQTFVAEQGSNDAEPSFSSYPQEKEPFPSQDSDMDG NFENVDEYIFLSLGLRSKKNAWAGPDHWKYGKAKESVARCTSEDDSTLETRQPRAKRQDEDDLEFTSCLETKFPDIFCPP KNSKSLLLPENRPPCVTKLPEDCHYEPQDLVKLFLLPNVKCLGRRARKLSGDVSEEQGNDYESFPSWDNGGVGDGEYDGD THSDIDDPSTLISQPRRVNKIEVDYDKTSKQVDVQALKIALWDHIQESIQLHVPVW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 17 | 613 | 597 | 0.0 | ||
| PANTHER | 17 | 613 | 597 | 0.0 | – | |
| PIRSF | 17 | 291 | 275 | 8.5E-76 | ||
| Pfam | 41 | 564 | 524 | 8.2E-84 | ||
| MobiDBLite | 179 | 200 | 22 | - | – | |
| PIRSF | 281 | 569 | 289 | 9.5E-35 | ||
| MobiDBLite | 373 | 390 | 18 | - | – | |
| MobiDBLite | 373 | 395 | 23 | - | – | |
| MobiDBLite | 533 | 571 | 39 | - | – | |
| PIRSF | 554 | 614 | 61 | 1.1E-10 | ||
| Pfam | 567 | 608 | 42 | 2.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Condensin complex | A multisubunit protein complex that plays a central role in chromosome condensation. | ||
| Biological process | Mitotic chromosome condensation | The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells. |
Expression pattern of LotjaGi3g1v0185400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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