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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0185600 |
| Transcript ID | LotjaGi3g1v0185600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT4G23500.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3T934|I3T934_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0185600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26012476..26020007) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTGTGTCCAAAGCTTAGAAACTCTTCTGTAATTCCTTTTTTCTTTCTTACATTCAGCTTTTCACGATGCTTTTCTTT TTGTTTCTTCTCAATGTGATTCGACTTTGATTATATCGAATGCACTTTTCTCTTATCTTTTCCAGCATTTCAGTGTTTTT TTATACGCTATTTACCGTGTTCCATGACTAGAAATTTTGGTTTTCTGCAGGTTGTCGGGGTTATTTTCGCAGTGGTGCTA TTGGGATCACTAGGAGTGAAGGTAGCAGAATGCAGAGTAGTAAGAAGATTACAGGATCTTGAGTACCCTGCTATCAATTG CAGAAAACATAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATCTG TGTTGCACCTGCTATGGCCAGGCCCAGGTTTGGCAAAGTCTACAATAGGAAGCCCAAGTCCACTGGCATTCTGTCAAATG ACAAGGCCTTCTAGAATGTTAGGATTCCTAAATAACCACCTGATGAGGTGTTATTATTAGTAGTACAGCTAGGGGGGGGG ACCACTAGGGAGTGAGAGGAATATATGTTAGTTATGGTGAGAGAATGAGGTAGGCTTGTTTTTGGGCTTAGGATTGGGAG AGAAGAGCACTCTCGAATTGCTCTGTTTATTTTCCTTCGTTTCTTGTATTCTCTAACACAATTTCTGGGTTTCATACCAG AAATTCAGTATAATCAATACAATTTCAGTTCCAGTTTCCTTCATATTTTCTGGTACCTAACATTGGTATCAGAGCTCCCG ATCCTGAGGGAGCTTTTATGGTGGTTACGCGAGCTGCAATGGAGTCCAGAGTTGATGACCTTGAGCGATCTGTTACCACG ATGAAGGAGATGGCCACGGAGCAATTTGAGGAGCTCCGGCGACTCATCATGAATCGGGAACGGAGGCGCACGCGAGGAAG ATCGAACACACCCAGAAACCGGCGACCATCGCGAGACAGAGAGCGAGATCGCGACGCTTCGTCTTCGCACTCCGGGTCGC GAACCGGGTCGCGAACCGGGTCGCGTACCTCAGACCACAGCAGGGAGCGATTCGATCACCCCCATCGCGTCCATTTGCGT GCTGTGACTGGAAGAAGGGTCGACATCCCCATGTTTGATGGAAGCGATGCTTATGGGTGGATTAATCGTGTTGAACGGTT CTTCCAACTCAGTCGTGTAGGGGAGGAGGAGAGGTTGGAGATGGTGATGATTGCCATGGAAGGGAAAGCACTGGGATGGT TTCAATGGTGGGAAGAGCAAGCTGTGGAGAGAACCTGGGAACCTTTCAAGCAAGCCTTGATAAGGAGATTTCAACCCACC TTGGTTCAGAACCCTTTTGGCCCTTTGCTTAGCATTAAGCAAAAAGGGAGTGTCATGGCCTACAGGGAAAGCTTTGAAGA GGCAGCAGCACCCATGAGAGGTGCTGATAGGGAGATCCTGAAAGGAGTGTTCCTTAATGGATTGCAGGAGGAAATCAAAG CTGAAATGAAATTGTACCCTGCTGCTGATCTTGCAGGATTGATGGATAGGGCCTTGTTGATTGAGGAAAAAAATTCTGCT CTCAGAGGAGAAAAAGGAAAGGATGAGGACAAACGTGGGTGGAAGGATAAGGGTGGGTTTGGAAGCAAATCTTCAAGTTA TGGGGGAAAGCACATAAGTTATAATTCCAGTCATCAGGGGAAGAACAATACTGGACAGGAAACCAAACCAAAAGAGACCC AGGACGATGGAGGGAATGAAACTAAGAACCCTGAGAAGAAGTGGCAAGGGGGACAAAGACTCTCTCAAAATGAGTTGCAA GAGAGAAGTAGAAGAGGATTGTGTTTTAAATGTGGTGAGAAGTGGGGAAGAGAACATGTGTGTGCTAAGAAACATTTCCA ATTCATTCTCATTGAGGGAGATGAAGAGGAAGAAGAGGAAGACATATTTGAAGAAGCTGAAGATGGTGAGTTTGTTTTGG AGGGCAAAATACTGCAATTGTCTCTTAATAGTAAAGAGGGCTTAACATCTAACAGGTCTTTCAAAGTTAGAGGAAGACTT GGAACAAGGGAAATCTGGATTCTGGTAGATTGTGGAGCAACCAGCAATTTTATCTCCCAAAATATTGTGAATGAACTAGA CTTGGCTGTTGTAGCAACCACTGAATATGTGGTGGAAGTTGGAAATGGGGCCAGAGAGAGAAATTCAGGAGTGTGCAAGA ATTTGTCACTGGTAGTGCAAGGAATCCCTATCACTCAACATTTCTTTATCCTTGGGCTTGGGGGCACTGATTTAGTCCTG GGAATGGATTGGTTAGCCAGCCTTGGGGACATTGAGGCCAACTTCAAAGAACTTATTATTAAGTGGAACCTTCAGGGCAA GCAGTTTGTGTTACATGGAGAACCGCAGGGTAATAAAATTCAGGAAGCTTGCAAAAACATAAAGAGCACAAGGAAGAACA AAGACCTGGATTTCTGTCTTTCTCATGAGTTTGTAGAAGGTATCAACATAGCAGTAGCTGAGGTCCCTGCTGAATTGAGA ACCGTTATTGAAAAATTCCCTGTGGTGTTTCAAGAACCTCATGGGCTGCCTCCTAAGAGGCCTACTGATCATGCTATTAT ACTGCAGCAAGGAGCAGCAGCACCAAACATAAGGCCCTATAGGTATCCATTCTACCAGAAAAATGAGATAGAAACTCAAG TGCAGGACATGCTCAAGAATGGGATTATAAGGCCCAGCATTAGTCCATTCAGTAGCCCTGCAATTCTAGTGAAGAAAAAA GATGGAGGGTGGCGTTTCTGTGTTGACTATAGAGCCTTGAACAAGGTTACTATACCAGATAAGTTCCCTATACCTATAAT CGATGAATTATTAGATGAGATAGGTTCTGCTGTTATCTTTTCTAAATTGGACTTAAAATCTGGTTATCATCAAATAAGGA TGAAAGAGGAGGATATTCATAAAACAGCTTTTAGAACTCATGAAGGACATTATGAATATCTAGTAATGCCTTTTGGGTTA TCTAATGCTCCTTCAACCTTTCAGGCCCTCATGAATCAGGTTTTGAAACCTCATTTAAGGAAGTTTGTTTTGGTTTTTTT TGATGATATACTAATCTATAGCAAGAGTTTAGAATTGCACATGGAACATTTGAGGTTGGTGCTCCAAAGCTTGCAGGAAA ATCACTTAGTAGCTAATAAAAAGAAATGTTCATTTGGCCAACCAGAATTGGTCTATTTAGGTCATGTAATCTCCAAACAA GGAGTAGCTGCTGATCCCTCTAAAATCAATGACATGCTGAATTGGCCTCAACCCAAAGAAGTGAAAGGGTTAAGGGGTTT CTTGGGTTTGACAGGGTATTATAGAAGGTTTGTGAGGAATTACAGCAAGTTAGCTCAACCTCTAAACCACCTCCTCAAGA AAAACAACTTTGAATGGAATGAGGAAGCCAGTCTAGCTTTTGCCAAATTAAAGGAGGTAATGACTACTGTTCCTGTGTTG GCAGCACCAGATTTCAGCAAGGAATTTGTGCTTGAGACTGATGCATCAGGAAAGGGGCTTGGAGCTGTTTTGATGCAAGA AGGGAGACCAATTGCATTCATGAGCAAGACTTTATCTGACAGAGCTCAGGCAAAATCAGTATATGAAAGAGAATTAATGG CTGTGGTTTTCGCAATCCAGAAATGGAGGCACTATTTACTTGGTAGCAAGTTCCTAATCCACACAGATCAAAAGAGCTTA AAGTTCTTAGCTGACCAGAGATTGATGGGTGAAGATCAGCAAAAATGGGTTTCCAAATTGATGGGTTATGATTTTGAAAT CAGGTACAAACCTGGAGTAGAAAACAAAGCAGCAGATGCCTTGTCCAGAAAAATGCAATTTTCTGCCATCTCATCTATTC AGTGTGAAGGCTGGAATGACTTAGAAGAAGAGTTATTGGCTGATGAAAAATGTAAAAAAATCATGCAAGAGCTATTGACA CAAGGGCAATCTCTAGCAGGGTATCAATTAAGGAAGGGAAGACTATTTTATAAGGACAGAATAGCGTTACCAAAGGAGTC CAGCAAGGTTCTCACCATACTCAAAGAATACCATGAGTCTGCTCTTGGAGGCCATGCAGGGGTCTTTAGAACTTATAAGA GAATCTCAGCTCTATTTTACTGGGAAGGGATGAAGATGGACATTCAGAAATTTGTGCAAGATTGTGAGGTTTGCCAGAGA AACAAATATGAAGCATTGAATCCAGCAGGTTTGTTACTACCTCTTCCTATACCATCACAAGTGTGGTCTGATATTTCTAT GGATTTCATAGGGGGCCTTCCTAAGGCAATGGGGAAGGACACCATCTTTGTGGTGGTTGACAGGTTCACCAAATATGCCC ATTTCATAGCTCTCTCACACCCCTATAATGCTAAGGAAGTGGCTGAAATATTCATAAAGGAGGTAGTAAAGCTACATGGG TTTCCCAATACCATAGTTTCTGACAGAGACAGAGTTTTTCTTAGCACTTTCTGGACTGAACTCTTTAGATTGGCTGGAAC CAAACTGAAATTTAGCTCTGCCTACCATCCTCAAACAGATGGGCAGACCGAGGTAGTAAATAGGTGTGTTGAAACCTATC TCAGGTGTGTGACAGGAACAAGACCTAAGCAATGGCCAAGATGGTTGTCTTGGGCAGAATTTTGGTATAATACCAACTAT CATTCTGCCATCAAAACCACTCCCTTCAAGGCCTTATATGGGAGAGACCCTCCTGCTATCATCAGGGGAACTGATTCTGT CACTTCAGTAGAGGAAGTGGAGAAGCTTACTGCTGAAAGGAACCTTATGCTAGATGAACTCAAGGAAAATTTGGAGAAGG CTCAAAACAGAATGAGACAGCAAGCAAATAAACATAGAAGAGACATTCAATTTGAGGTAGGGGATCTTGTGTATCTCAAG ATTCAACCCTACAAACTCAAGAGTTTGGCCAGGAGGAAGAATCAAAAGTTGAGCCCTAGATACTATGGTCCTTATCCTAT AATAGAGAAGATCAATGCTGCTGCTTACAAGCTTCAATTACCAGAGGACAGCCAAGTTCATCCAGTATTCCACATTTCCT TGCTCAAAAAAGTAGTGAAGGAGGGGATCGTCAGCCAACCATTGCCCAAAGATCTAAATGAAGGGTGGGAGCTTCAAGTA GAACCTGAAACCATCTTGGATGCCAGACAGAATGACCTTGGAACCACAGAAGTTCTAGTGAGATGGAAGAATCTGCCAGC TTTTGAAGATTCCTGGGAAGAATTGGACAGATTGATAGCACAATTTCCAGACCATCACCTTGAGGACAAGGTGAATCTTC AAGGGGGGAGAGATGTTGCACCTGCTATGGCCAGGCCCAGGTTTGGCAAAGTCTACAATAGGAAGCCCAAGTCCACTGGC ATTCTGTCAAATGACAAGGCCTTCTAGAATGTTAGGATTCCTAAATAACCACCTGATGAGGTGTTATTATTAGTAGTACA GCTAGGGGGGGGGACCACTAGGGAGTGAGAGGAATATATGTTAGTTATGGTGAGAGAATGAGGTAGGCTTGTTTTTGGGC TTAGGATTGGGAGAGAAGAGCACTCTCGAATTGCTCTGTTTATTTTCCTTCGTTTCTTGTATTCTCTAACACAATTTCTG GGTTTCATACCAGAAATTCAGTATAATCAATACAATTTCAGTTCCAGTTTCCTTCATATTTTCTGGTACCTAACAATCTG CAATCAGCAATCTCAGCCACTATGCGAATGATGGCGGGGCTATACTGGTGGTGCCACCAGGGAAATGGCTCACTGGAAGC TTTAATCTCACTAGCCATTTCACACTTTTTCTCCAAAAAGATGCTGTCATTCTTGGATCCCAGGTATTTGACATCCATTG TTAATTTTTTTTTTTCATTTTTCATTTTCTCCTAAATCAACACTTCATTGACCAACATTAACAGGTTGAATCAGAGTGGC CCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACA CACCTCACTGATGTTGTTATTACTGGTAAAACTACAAGGACCATATATTATCATCTCATCTCTATTAGAATTTGTTAATA TCATGCCTCTTTGGAAAATCTTTTTTAATGTCACATGTTTTGAATCTGTTCATTAGGTCACAATGGTACTATTGATGGGC AAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTAAACTCACCACGCCTTACATGATTGAGATTATGTACTCT AGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAA TGATTTTCATTTCAATTTATGTTCAATCTTCATGGACCATATGTTCTGTTATTCTCATGTTCTTGTCACACCTTTCACTG CAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAATT TTTATATCATTTCTGTAATTCTATTATATATAGTTTACTTCCACTGGATTTCAATTTAGTCTTTAAAAGATGGAAATTAT GATTAATATGATCCTTGAAGGATGAAAAAGGACAAAATCCATTTTAGATCTTGAAAGACTAATTGAAATTTGGTTTCATC TTTCGGCGGCTAGTTTGTCTACTTTCTTAGCCCTGATATTTTTCATCGACTAAAGTTACTATTCACTCAAATTTCAATCA TTCTCTAACTATTTTTTCCTCCATTTTACAGATTCTTGTTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGA TGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAA GACTTACATGTATATCCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCA GAAGACCTCACTGCCATCAACACTCAATCAGCAATTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACAT TTTTGTCAAAGGAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTG GCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCA AAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATT GGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTG GGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAACTGAAGACTTGTTCCTTTAAAAGTTTG TCACTCTTCTGA
CDS sequence (LotjaGi3g1v0185600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAGATTATGTACTCTAGTCAAATTCAAATCTCAAATCTCACTTTGGTCAATTCTCCATCTTGGTTTGTCCATCC AATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATTGATC CTGATTCTTGTTCAAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGG GATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAGCACATAATAATCAGAAGACTTACATGTATATCCCCTGATAGTGC TATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGATATTAGAGCAGAAGACCTCACTGCCATCAACACTCAAT CAGCAATTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTTCACC ATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCAT CACTGGAATCAATTATAGAGACGTGATTGCAAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTT TCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGT GTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGA CAAACTTCCCATTGAAAGTGTTCAACTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Protein sequence (LotjaGi3g1v0185600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEIMYSSQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCSNTRIEDCYIVSGDDCIAVKSGW DEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAIRIKTAVGRGAYVKNIFVKGMNLFT MKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIANDPFTGICISNANIEKVGKKLAWNCTDVHG VTSNVSPEPCALLQEKPGKFDCPFPADKLPIESVQLKTCSFKSLSLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 4.3E-163 | – | |
| PANTHER | 1 | 282 | 282 | 4.3E-163 | – | |
| Gene3D | 1 | 249 | 249 | 1.1E-67 | ||
| Pfam | 2 | 240 | 239 | 6.8E-29 | ||
| SUPERFAMILY | 2 | 280 | 279 | 1.44E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0185600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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