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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0186500 |
| Transcript ID | LotjaGi3g1v0186500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G62300.1 WRKY family transcription factor; Swiss-Prot: sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6; TrEMBL-Plants: tr|V7BZA4|V7BZA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0186500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26246979..26250789) extracted from Lotus japonicus Gifu genome v1.2.
GTCACATTATTCAACGCAAACATAAAGGGCACTTCTAGTTCTTCACTTTTGGTCTTCTTGTCAAGTCTGAGCTTCCCTCT TTTATTGCCGAGTCCAAATGCATCATTTACTATAACCTCTTTCTCTCTCTCTTGAGTCTCAATCTCTTTCTCTCTCTCTT TTTCCATTGAAATTGATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCAGCTTCTTCCACCATAA GCCAATTGTTCTCAACTCTTTTCCTGAAGACCACAAAAACAACCACAACCACAACCACAACAACAACAAGAAACTTAGTC CCAATAACATGGACAACAAAGTTAACAACACCGCCAATAACAACAACAGCACCGCCACAATCCCATTCCAAGTCAACCTT AGCTCCTCTGATGAGAAGAGACCCATCATCGATGAAATGGACTTCTTCTCTGATAATAAGAACAACAACAACAACAAGGA TCATCATGACACTCTTGTTGGCTCTGCCTCCACCTCTGCACCTCATGATCATTCCACCAATCCTGCTTTGTTAGAATTCA AAGTAAACGTGAGTGACCCTTAATTCCTCCTCTACATGTGTTCCATTCTATATTCATTCATTTTCATACCCTTTATCTTA ATTTCTCTCTATGATGAGATTTTGTGTTCTTATGAAATTTGAATTTTTTTCTTAGACTGGTCTGAATCTTCTCACCACCA ACACTAGCAGTGATCAGTCCATGGTTGAGGATGACATACCATCCAATTTGGAAGACAAAAGAGCTAAGATGGAGGTAAAG AAAAGCTATATCTAACTGCAAATTCACTTTTTATTAATCCGACAGGTGGTTTGTTCAGTTGGTACATCAAAGTGCATGCT TAATTACATTTTGTAAAGTCTTGTGAGTTGTGTTTGAAAAAACACCTCCGAGAGAACTAGCCCACGAGAATGTGAATGTT GAGGGCTTGAACGGAGTATATACCTGTATTATTATAAAAAATCACTTATTTGATGAAATTTGATTTTAATAAATTATTAA GCATTCATATGTTATGAGATTGATTTGTACCGTGTGATTTTTCAGCTGGTTGTTCTTCAAGCTGAGATTGAGCGAGTGAA GGTGGAGAATCATCGCCTGCGGAGCATGCTTGAACAGGTGAACACCAATTACAATGAGCTGCGGGTGCATTTGGTGAGCT TGATGCAGGGCCAGAAGGCTGGGGAGGAAGGTGGTGGAGACCAACAAAAACAAGTGTTTGATGGAAAACTTGAAGGGGAG AGGAAACAATCTGGGAATGGTGGAGGAGCTCTGGTGCCGCGGCAGTTTATGGATCTCGGGTTGGCGACTAATGCTGATGT TGATGAACCTTCACTCTCTTCATCTGTGGGAAGAAGTCAGGAACAGTCAAAGTCACCTGCAAATAATGTGGAGGTGGGCT CTGATGAAGACAAGAAGGAATTTTCTAGTGCCATAATTGAAAGAGAGGATAGTCCCCCAAATCAAGGTTTAACTGCTAAT AGCGTTCCAAGGTTCAGTCCTCCGGGAAATGTTGATCAAGCTGAAGCCACCATGAGAAAGGCAAGAGTTTCGGTTAGAGC TCGATCAGAGGCATCTATGGTACGTCGCAGAATAGCATGTTTGGATCAGTTTCTCTTTCTTTAGAATCAATTTTGAAACC AAGAAGTTATTCCTGAAAGTTTTTCCCCAAAATTGATTATGTCAGGCTTTAGAATCAATAGTAGAAGGATTTACCAATAT GTACTTGGGCAAAATGGCTTTTTATGTGTTTTTTCTTTAGGCCTTTCATGTGATACAAAATTGTTTTTGTCTCAGCTCAC TGATGGGTGTCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTACAGATGCACCA TGGCTGCTGGTTGCCCAGTCAGAAAACAGGTATATATCATGTTCATTCTCAAGCTCAAGTTCCTGCTTTCACTTCTCATT GGTTCTCAATTCTATTAATTTCTTCAGCAGTCTGAACTAAATTAAGTTGCATATCTTTTGTCCTACTTAAAATTGAGTTT CTGTGTGTTTAGGTGAACGGACTTTGATCTTAATCTATAAGAAGAATTTCGTTCATTTTTTATTATCTTAAAGTACGTAT TGACGTATTGACATCTGTTTGTACTAGTGACTAGGAATATCCAAACATAGAGCCTTTTGAGATTCATTTGCCAATTGAAT TATAACTCATCTTTCAATCTTCAACATTTTTCCGCCTATGCTTCATATCCGGAGGAGGGCTGTATTAGGCCGCCTTGACA ACCAATGTAACACTAGTGAATATCTTCAACTTCAATCTTCAAAATTTGGTTTATTTCCTAATAGTATATTTGCATCAGCC TTTCTTTTATGAAATCCAAAAGTTTCTCCACATATTTGATTCTAACTTTAGAATCAATTGTAAAGAAGTTTCAAAACATG TATCTAATTATATTATGATTAAACAGGTACAAAGGTGTGCTGAAGACAGAACAATACTGATCACAACATATGAAGGAAAC CACAACCACCCTCTGCCTCCAGCAGCAATGGCAATGGCACAAACAACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATC AATGTCAAGTGCTGATGGCCTGATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCCTCAAGCATGGCAACAA TTTCAGCATCAGCTCCATTCCCAACTGTCACATTGGACTTGACTCACTCTCCAAACCCATTACAGTTCCCAAAAAACCCA ACCCAATTCCAAATCCCCTTCCCAGGTATCCCTCAGAATCTAGCAAATTCCCCAGCCTCATTACTGCCTCAGATATTTGG TTATAACCAGTCAAAGTTTTCAGGGCTTCAAATGTCTCAGAATGCTTCTTCAGACCCTTCTCAATCTCAACCACCACCAC CACCTCACCTTGCTGACACAATCAGTGCTGCCTCTGCTGCCATTGCTGCTGATCCCAATTTCACTGCAGCTTTGGCAGCC GCCATCACTTCCATTATTGGAGGAGCAGCGCAGCCAAACACCAATAACAGTGCCAATAATAATGGCAACACCAATGTTAC ATCAAGCAACAGCAACAATAGCAATGGGAAGCAATAAAATCATTATACCAATTTTCAAATTTCTCATCAGGAACTAGCTA GCTCACATTATACTCTTTCAATTTTTTGTCCCTTCATTTTTGTTAGATTTATTTAATTATTTTCTCCCCTTCATTAGGGC TCAAAAAATAAGTTGAGCTGATTTTTTTGTTTGTCCCATTTGTTAGACTCAGGAAATATTGTCATATCAGAAATATAGTT GATATTCTTTATCATTTCTATTATGCTCAAATTTACATGTGTTATACAAATACAATAATCTATAACAAATGTGACAAAAA TGATAAGGGACATTATATAGAAAACAAATGAGTCGAAGGTTATATATATTTTCTTGTCTGTTTTAACTTTATTATTTGTC TTTTTGTAATCTTTCTAATGCTTATATGGGAAAAGCTAAACCTGAGGTGAAAAGAACAAGCAAGATGAGTTAAAAATAGA GCAAGTTGTAGTTTTCGTGTACCAAATGGCAAAGAGAAAACTGAGTCAAGAAAACCGTCTGAGATTGAGAGTTGTTGAAA TTAAGAGGACGTCATTCCAGGGACACGTGAAGAAGAGATTAATATTGTAAGAGAAAAAGGATAATAAGAGATACAGAGAG GGGGACTAGTTCAAATTGTCTTTTGTCATTTATAGTCCACTCGACTGGTAG
CDS sequence (LotjaGi3g1v0186500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCAGCTTCTTCCACCATAAGCCAATTGTTCTCAA CTCTTTTCCTGAAGACCACAAAAACAACCACAACCACAACCACAACAACAACAAGAAACTTAGTCCCAATAACATGGACA ACAAAGTTAACAACACCGCCAATAACAACAACAGCACCGCCACAATCCCATTCCAAGTCAACCTTAGCTCCTCTGATGAG AAGAGACCCATCATCGATGAAATGGACTTCTTCTCTGATAATAAGAACAACAACAACAACAAGGATCATCATGACACTCT TGTTGGCTCTGCCTCCACCTCTGCACCTCATGATCATTCCACCAATCCTGCTTTGTTAGAATTCAAAGTAAACACTGGTC TGAATCTTCTCACCACCAACACTAGCAGTGATCAGTCCATGGTTGAGGATGACATACCATCCAATTTGGAAGACAAAAGA GCTAAGATGGAGCTGGTTGTTCTTCAAGCTGAGATTGAGCGAGTGAAGGTGGAGAATCATCGCCTGCGGAGCATGCTTGA ACAGGTGAACACCAATTACAATGAGCTGCGGGTGCATTTGGTGAGCTTGATGCAGGGCCAGAAGGCTGGGGAGGAAGGTG GTGGAGACCAACAAAAACAAGTGTTTGATGGAAAACTTGAAGGGGAGAGGAAACAATCTGGGAATGGTGGAGGAGCTCTG GTGCCGCGGCAGTTTATGGATCTCGGGTTGGCGACTAATGCTGATGTTGATGAACCTTCACTCTCTTCATCTGTGGGAAG AAGTCAGGAACAGTCAAAGTCACCTGCAAATAATGTGGAGGTGGGCTCTGATGAAGACAAGAAGGAATTTTCTAGTGCCA TAATTGAAAGAGAGGATAGTCCCCCAAATCAAGGTTTAACTGCTAATAGCGTTCCAAGGTTCAGTCCTCCGGGAAATGTT GATCAAGCTGAAGCCACCATGAGAAAGGCAAGAGTTTCGGTTAGAGCTCGATCAGAGGCATCTATGCTCACTGATGGGTG TCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTACAGATGCACCATGGCTGCTG GTTGCCCAGTCAGAAAACAGGTACAAAGGTGTGCTGAAGACAGAACAATACTGATCACAACATATGAAGGAAACCACAAC CACCCTCTGCCTCCAGCAGCAATGGCAATGGCACAAACAACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTC AAGTGCTGATGGCCTGATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCCTCAAGCATGGCAACAATTTCAG CATCAGCTCCATTCCCAACTGTCACATTGGACTTGACTCACTCTCCAAACCCATTACAGTTCCCAAAAAACCCAACCCAA TTCCAAATCCCCTTCCCAGGTATCCCTCAGAATCTAGCAAATTCCCCAGCCTCATTACTGCCTCAGATATTTGGTTATAA CCAGTCAAAGTTTTCAGGGCTTCAAATGTCTCAGAATGCTTCTTCAGACCCTTCTCAATCTCAACCACCACCACCACCTC ACCTTGCTGACACAATCAGTGCTGCCTCTGCTGCCATTGCTGCTGATCCCAATTTCACTGCAGCTTTGGCAGCCGCCATC ACTTCCATTATTGGAGGAGCAGCGCAGCCAAACACCAATAACAGTGCCAATAATAATGGCAACACCAATGTTACATCAAG CAACAGCAACAATAGCAATGGGAAGCAATAA
Protein sequence (LotjaGi3g1v0186500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGGGLSIDSDPIGSSFFHHKPIVLNSFPEDHKNNHNHNHNNNKKLSPNNMDNKVNNTANNNNSTATIPFQVNLSSSDE KRPIIDEMDFFSDNKNNNNNKDHHDTLVGSASTSAPHDHSTNPALLEFKVNTGLNLLTTNTSSDQSMVEDDIPSNLEDKR AKMELVVLQAEIERVKVENHRLRSMLEQVNTNYNELRVHLVSLMQGQKAGEEGGGDQQKQVFDGKLEGERKQSGNGGGAL VPRQFMDLGLATNADVDEPSLSSSVGRSQEQSKSPANNVEVGSDEDKKEFSSAIIEREDSPPNQGLTANSVPRFSPPGNV DQAEATMRKARVSVRARSEASMLTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHN HPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPKNPTQ FQIPFPGIPQNLANSPASLLPQIFGYNQSKFSGLQMSQNASSDPSQSQPPPPPHLADTISAASAAIAADPNFTAALAAAI TSIIGGAAQPNTNNSANNNGNTNVTSSNSNNSNGKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 29 | 68 | 40 | - | – | |
| MobiDBLite | 42 | 68 | 27 | - | – | |
| PANTHER | 74 | 593 | 520 | 5.0E-227 | – | |
| PANTHER | 74 | 593 | 520 | 5.0E-227 | – | |
| MobiDBLite | 91 | 119 | 29 | - | – | |
| MobiDBLite | 103 | 119 | 17 | - | – | |
| Coils | 165 | 192 | 28 | - | – | |
| MobiDBLite | 255 | 321 | 67 | - | – | |
| MobiDBLite | 256 | 279 | 24 | - | – | |
| MobiDBLite | 280 | 295 | 16 | - | – | |
| MobiDBLite | 302 | 316 | 15 | - | – | |
| Gene3D | 328 | 405 | 78 | 3.5E-33 | ||
| SUPERFAMILY | 336 | 404 | 69 | 9.42E-28 | ||
| ProSiteProfiles | 338 | 404 | 67 | 30.113 | ||
| SMART | 343 | 403 | 61 | 2.2E-37 | ||
| Pfam | 345 | 402 | 58 | 2.0E-24 | ||
| MobiDBLite | 514 | 535 | 22 | - | – | |
| MobiDBLite | 569 | 596 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0186500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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