Transcript — View — Lotus Base

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LotjaGi3g1v0188300.3

Overview

Field	Value
Gene ID	LotjaGi3g1v0188300
Transcript ID	LotjaGi3g1v0188300.3
Related isoforms 4	LotjaGi3g1v0188300.1 LotjaGi3g1v0188300.2 LotjaGi3g1v0188300.4 LotjaGi3g1v0188300.5
Lotus japonicus genome version	Gifu v1.2
Description	Hexosyltransferase; TAIR: AT1G05170.2 Galactosyltransferase family protein; Swiss-Prot: sp\|A8MRC7\|B3GT2_ARATH Probable beta-1,3-galactosyltransferase 2; TrEMBL-Plants: tr\|A0A151RMU0\|A0A151RMU0_CAJCA Hexosyltransferase; Found in the gene: LotjaGi3g1v0188300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:26857708..26860513) extracted from Lotus japonicus Gifu genome v1.2.

TCTGATTTCAAGGATGTTTGTGAACTCACTGTGAAACTTGATTTCAATGGCAACTTGTGAGATAGTTACTGTGGTGCTTT TCTAATGAGAAATTTAAATGTGTAAACAGGATGTGGACTATTCCTGAACCTAAAGGGCTTGCAAGGACAACAGCTACTGA AGCTGAAAAACTAAATCTAGTTTCTGAGGGTTGTAATTCCAGAATTGTAAGCACTGTTACCTTTCTAATTTTAGTCTTTG ATCATGTGCTAGTTATCAATGAAAGTTTGTTTTGAATTCAATGTTTCATTCTATAATGTATAGCATGTTTGGAAAACCTT CTTTCTAAATTCAAAATCAATTTTAAGGAGAAGCTTCTGTGTATAACTTCTGGGTGACAAAATTCATTCTGAGGAAAAAG AAGCAGATCCAAATTAACATGCTTCACATCATATGATTTTTTCTAAGTTAGTGTATTGTTTCTCTTAGTTGCAAGAGAAG GAGGTGAAGCGCGAAACCAAAGGCATCTTCAAGACAAGTAATGCCATACAGTAAGTTACTTATACCATGATCCTATAGTG TATCTGCTTGTAAGTTATTGTTCATCGCAAAGACGCTTAACTGCATTGAATATAGAACCCTGGACAAGACTATTTCGAAC TTGGAGATGGAGTTGGCGGCTGCAAAGGCAGCTCAGGAGTCTATAAGAAGTGGTGCTCCTGTATCAGAAGATATCAAGAT GCCTGAATCATCTGGTAAACGAAGATACCTTATGGTCGTAGGAATAAACACTGCTTTCAGCAGCCGGAAAAGAAGAGACT CGGTTCGTCAAACATGGATGCCATCAGGTTCATAATTTTTTCCTTGCTTACTAATTGTGTTCTATCATGCTTTGTTACAT TTTTTTTCTGTTTACTATTGGCGATGGTTTCTGATGTTGAGTTTTGTGATAACATTGAAAACAGGTGAGAAAAGAAAGAA GCTAGAGGAAGAGAAGGGCATTGTCATCCGCTTTGTAATTGGTCATAGGTAAGTCTCGTCTTTCTTTCAGTGGTTTTATT ATTACATAGTTGTCATGCAACTATATCTTGTTTTTATTTTAAATTTATGAATGAATTGTAAAATGAACTTTTTTTTCACT CTTTTCTGCAGTGCAACATCAGGGGGTATCCTAGACAGAGCTATTGAAGCAGAAGATCAGAAGCATGGAGATTTCCTAAG GCTGGTAATGGTCCTCTTTGTCTTATTGACGCTTCCGGCTCCCATGTCCCTTCTCTCATTTAGTCATTTTGTTAAGACTT GCTACTTTTACTTGACAAGATAACATAACCAAATTTATTTGAAATGAAAAAAAATAAGGTTTTCAAATCATTTTGTTTTG ATTCTGCAGGATCACGTTGAAGGGTACCTTGAATTGTCAGCAAAGACAAAGATCTACTTTGCCACTGCTGTTAACTTGTG GGATGCTGAATTCTATATCAAAGTTGATGATGATGTTCATGTAAATATAGGTATGTAATTTTTTCAATCTCATGATAATC TGACCTTGCATGAGGAGTTGGTGATTCAAACTTAAATTTTTCTGCTCTACATGGTCACTACATAAATTCTCTTTCATATG CATCTTAGAACTCTACATATACTAGACATGGTTTATGTTTCTATATTCTGTATGAATCTTGAATTTTTTTTTTTATGGTA ATATGTCTTATTATCCTATTCAATCTGTTTCCAGCTACACTTGGACAAACTTTAGTTAGACACAGAAGAAAACGGCGGGT TTACATTGGATGTATGAAATCTGGGCCTGTTCTTTCTCAAAAGTGAGAATTATTTTCTTTTATCCATGTTCAATTTAATA TAAGAGTTGTTAATTTGTAATACTTTTTCTGGCTTCTTACCTGCCATTCCCAATTTTCTTGCAGAGGGGTAAGGTACCAT GAACCAGAATATTGGAAATTTGGCGAGAATGGAAACAGGTACTTCCGTCACGCCACGGGACAGTTGTATGCCATTTCAAA AGATCTTGCTAAATATATTTCACTTAACCAGTAAGTCCTTCATTGTCTCGCTTATGGGTGGAAATAGTAAACTGAAGTCA AATTTATGGACTTAATGCTGATGCATGATTTTCTGTCTCAGGAAGGTTCTTCACAAGTATGCCAATGAGGATGTCTCACT AGGATCTTGGTTTATTGGACTTGATGTGGAGCACATAGATGATCGTAGACTCTGCTGTGGTACACCACCAGGTGAAGATT TTTTCATTCATTTATAGATAATATTGTTAAGTTCCTACATTGACTCGAGAAATTGCCAAAATACTAAAGGATAGAGCAAT CTTCACTCTTGAGCTAGCTTTTAGGTAGAGTTACGCCTAATCCAAATTCTAAAATGGTATCAGAGCCTATCAAATGTTCA ATTCTGCGAACTTTGCGGCTCCAGATGTCTAGCTCTCGTCATGAAGGATGTGTTATGCCAAAGTAGTCCTTATAAAGGGT AGAAAGATCCTCACCCTGAGCTTGCTTTCGGTCTACAGTTAGATCTTAAACCCAAATTCTAAGAGATATTGACCTCTGTG AATATACATGTTATCAAATCATTGTATATTTGGTTTGATTAAGGAATAATAAGTGGTCGACAGTTTCAGATTCTTGAACT TCTTGTTACTCTTGCAGATTGTGAATGGAAGGCCCAGGCAGGCAACGTTTGCGTTGCTTCGTTTGATTGGACCTGCAGTG GAATTTGCAGGTCTGCTGAAAGGATCAAAGAGGTGCACAGGCGATGCGGCGAAGGTGAGAAAGCTTTGTGGAGTGCCACA TTCTAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0188300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTGGCGGCTGCAAAGGCAGCTCAGGAGTCTATAAGAAGTGGTGCTCCTGTATCAGAAGATATCAAGATGCCTGA ATCATCTGGTAAACGAAGATACCTTATGGTCGTAGGAATAAACACTGCTTTCAGCAGCCGGAAAAGAAGAGACTCGGTTC GTCAAACATGGATGCCATCAGGTGAGAAAAGAAAGAAGCTAGAGGAAGAGAAGGGCATTGTCATCCGCTTTGTAATTGGT CATAGTGCAACATCAGGGGGTATCCTAGACAGAGCTATTGAAGCAGAAGATCAGAAGCATGGAGATTTCCTAAGGCTGGA TCACGTTGAAGGGTACCTTGAATTGTCAGCAAAGACAAAGATCTACTTTGCCACTGCTGTTAACTTGTGGGATGCTGAAT TCTATATCAAAGTTGATGATGATGTTCATGTAAATATAGCTACACTTGGACAAACTTTAGTTAGACACAGAAGAAAACGG CGGGTTTACATTGGATGTATGAAATCTGGGCCTGTTCTTTCTCAAAAAGGGGTAAGGTACCATGAACCAGAATATTGGAA ATTTGGCGAGAATGGAAACAGGTACTTCCGTCACGCCACGGGACAGTTGTATGCCATTTCAAAAGATCTTGCTAAATATA TTTCACTTAACCAGAAGGTTCTTCACAAGTATGCCAATGAGGATGTCTCACTAGGATCTTGGTTTATTGGACTTGATGTG GAGCACATAGATGATCGTAGACTCTGCTGTGGTACACCACCAGATTGTGAATGGAAGGCCCAGGCAGGCAACGTTTGCGT TGCTTCGTTTGATTGGACCTGCAGTGGAATTTGCAGGTCTGCTGAAAGGATCAAAGAGGTGCACAGGCGATGCGGCGAAG GTGAGAAAGCTTTGTGGAGTGCCACATTCTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0188300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELAAAKAAQESIRSGAPVSEDIKMPESSGKRRYLMVVGINTAFSSRKRRDSVRQTWMPSGEKRKKLEEEKGIVIRFVIG HSATSGGILDRAIEAEDQKHGDFLRLDHVEGYLELSAKTKIYFATAVNLWDAEFYIKVDDDVHVNIATLGQTLVRHRRKR RVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNRYFRHATGQLYAISKDLAKYISLNQKVLHKYANEDVSLGSWFIGLDV EHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWTCSGICRSAERIKEVHRRCGEGEKALWSATF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11214:SF5 View details on PTHR11214:SF5 Search for proteins/transripts with this domain View external data on PTHR11214:SF5	1	294	294	4.3E-187	–
PANTHER	PTHR11214 View details on PTHR11214 Search for proteins/transripts with this domain View external data on PTHR11214	1	294	294	4.3E-187	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.550.50 View details on G3DSA:3.90.550.50 Search for proteins/transripts with this domain View external data on G3DSA:3.90.550.50	41	238	198	5.6E-7	–
Pfam	PF01762 View details on PF01762 Search for proteins/transripts with this domain View external data on PF01762	48	245	198	2.3E-51	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006486 View details of GO:0006486 AmiGO InterPro QuickGO	Biological process	Protein glycosylation	A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.	Subterm of View details of GO:0006464 View details of GO:0043413 Part of View details of GO:0009101
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0188300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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