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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0188400 |
| Transcript ID | LotjaGi3g1v0188400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT1G10000.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151R2K2|A0A151R2K2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0188400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26874758..26880057) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGAGTTTGCCTCTTAAAAAGTGTTCTGACTGCAATTTCGCTATTTTACCTCTCTTTTTTTAGGATGCCGAAAGGGGT GGTTAAACAGTGCAAGGAAATTATGACGCGTTTTCTATGGGGTGGTTCGGAGGAGGAACGGAAAGTGGCTTGGGTAAGTT GGAAACAGCTATGCAAGCCAAAGTCGCCAGGTGGGCTTGGAATTAGAGATTTGGAATGGTTCAATTTAGCACTACTGGGA AAATGGAGATGGCGCCTAATGCATGAAAGGGACCAACTGTGGTGCAAAGTTTTATTTGCGAAGTATGGGGGTGGCCAAGT GAAAAAGACGTTTGTATGGTGGTCGGATTTAATTAAAAATTGTGTTGGTTCTGTATCAAATTTTTAGTTTGAAAATGGGG TGAGTAGGAGGATTGGGGAAGGTGACGACACATGGTTTTGGAAGGAAAATTGGCCTGGGCATGGTAAGTTCTGTGAATTG TTTGCTACCTTATTCCATGTCTCGGCTCAACAGGACTGGAGGGTTGTGGATATGGGGTGTTGGGAAGAGGATAAATGGGT CTGGAATTTTCATTGGTTGTGTGAGCTAGAGGATGGATGTGCAAATCAGTTGTCCTCTCTTCTAAATATGTTAGCATCTT TTTCTCCAATTAGAGGACAAAAAGATAAATGGATATGGATAAAGGAAGGTAACGACATTTACTCTGTTTGTTCAGCTTAT GAGGCTCTGGCGGTTGATTTGTATCTGGAAGAAGATCGCAGCTTTAAACTATTGTGGAAAGCATTGGCTCCGTCAAATGC AATTGCAGTGGGCTGGAAAGTTTTATTGAATAGGATCCAAACTAAAGACAATTTTTTCCAGAGGAACATCCAAATAGCAA ATTTGTCTTGCCCTTTGTGTGGTGTTGTGAATGAAGGGTCTTGCCATCTCCTCTTTTCTTGCTCGGTGGCCTGGCAGGTG TGGGGTTTAGTTTATAATTGGCTGGGTTTTTATGCTGGCATGCCTTGGCTCTCCAAGGACCATCTTATGCACGTTGTAGG CCTAGGTTCTACAAAGACAAGGTCTGGTTTACCAGTGATCTGGTTATCAGTGGTTTGGCATATTTGGGTGGGGCGGAATG CGAAGGTTTTTGGGGGAGAAGATTTTAATCTGACATCATGTTTTGATCAAGCTCGTTTAAAAGCTTGGTTATGGCTGAAA TCAAAGAGCAGGAATTTTTCTCATGCTTTTTCGGAGTGGATTGGTGAACCTATGGCGTGCTTAGATGATATGTAGAGGAG TCTGGTGCTGCTGTTGGTTTTATTTTGATGACCACTTTTTCTTTTCTTTAGCTGGTTTTACCTTATTATGTTTTTGCAGG AAGTTGATAGCTATTGCATTTAGTTTTGTCTCGTTTGGAACTTATTGGATCTCTGTTGCTTCTTAGCTCTTGAGCTGCAG TCATGTTTGGAAATTGGGGTATTTGGATTTCTCTATGTTCTGAAAACTGAGGTGGGCTCTTGTGCGTGCTGTTGCTATAT TAATGTGGCCGTGGCAATTTGCTGTGGAATGAAGGGCTTTGGTTTTGGTAACCGTAGTGGAGGTTGTGCTTATGTTGTCA CTTGTGGATAACTTGGGTTTGTTATTTTGTTTGTTATTGGATGGTGGAAGCATGCCTATCTTGTGCTGGTTCTTTGGTCG TGGCGTTTGTTCTTGAATACAAGGTTAATAGAGAAATTAGTTTTTTCTAATTTAGTGACAACTGTAAATAAGTGCCAGTT GTTAGGTTGTTAGAGTTAAGTTTTATTCAGTTAGATTAGAATAGATATTGATACACAATCACACTTGTATATATACTTAG TTGTTAAATGAAATATACAGAGAATTATTTTCTCCCAAATACGTAGAATTCAATATGGTATCAGATGTAACCGTCTCTCG TTTTCCGCGCCTCTGAAGAAGACCGTCTTCTTCCTTGCGATCTGGTTCACGATCATCTTCGTCTTCTTCCTTGCGATCTG GTTTACGATCGTCTTCTTCCTTGCGATCTGGTTCACGATAGTCTTTTGTTCTTCGCGATTCTCTTGAAGCTTCGTCTTCT ACCTCGCGATTCTCTTCTTGTGCTTTTTTTGCACGCGGTTCTTCGTATCAATGGATGTTACGAGCCCTTTCTACCTTCAT CCCTCTAATAATCTAGGAATTTCGCTTGTTTCTCAGTGTCTTACTGGAGATAATTACAGTTTCTGGTGCAGATCGATGAT TTTGGCTTTGACTGCTAAAAACAAATTTGGATTTGTTGATGGAACAATTCCAATTCCTGATGAGCTTGATCCTCTTTTTC ACTCCTGGAAACGCAACAACAGCATAGTTGCTTCATGGATTCTCAATTCTGTTTCAAAGGAGGTTGCATCGAGCATCATC TACTCTTCCTCTGCTTCTGAAATTTGGCTTGATCTTCAGGAACGGTTCAAACAAAGCAATGGACCGAAAATCTTTGAATT GAAGCGTGAATTGCTAGGGCTTCAGCAAGGTACTCTTTCTGTGAGTCAATACTTCACAAAATTGAAGTCACTCTGGGAAG AATTCGTGGAACACCGTCCTGCACACACATGCAATTGTGGTGGTTCTTAGCCACTCCTTGATTACATGCATATGGAGTAT GTGTTGGCCTTTTTGATGGGATTGAATGAGTCCTATTCTCAGGTTCGTGGTCAGGTTCTTCTGATGGATCCCTTACCATC GATTAATCGTGTTTTCTCCTTGATCCACCAGGAAGAAAAGCAACGACAGATAGGGATTTCTTCCTCTGCAGATCCTAGTT CTAGTCTAGCATGTGTTGTGCAAGCAAATCCTGCTAATTCCAAGTCTCATTCTGGATCTTCTACTGGAGATTCAAACTCT CGCTATCAAAACAAGAATCAGAACAAGAATCGACCAACCTGTACTCATTGTGGCATTCTAGGTCACACCAAGGATAGGTG CTACAAGATAATCAGTTATCCTCCTCATTACAAGAAGACCAAGCCTGTGGCCACTGTAAACAATGTCACATCTGATTCTT CTACTCAGGGAACTGCTTCAACTGCTCCATCCATGGCTCTCACCACTCAGCAGTATCAACAACTGCTTCAGCTACTGCAG TCTCAGATATCACAGGCTCAAGTTCCTTCCTCTACTCAATCTGATGATGATCATGTTGGTATGATTTTTTCTACCATTTC TCCTTTTACTCCTTTACCTACTTGTCATTCTTGGATACTAGACTCCGGAGCAACCTCTCACATTGCTAGTAGTTTCAGTC TATTTTCTTCACATAAAACATTACAAAACAAGTTTGTTCTCTTACCTAATAGCACTAAAGTCCCTGTTTTAGCACGTGGT CAGGTTATTCTATCCCCTTCCTTGATTCTGAATGATGTGCTTTTTGTTCCTTCATTCAATGTTAGCATCATCTTTGTCAG TAGTTTACTGAAATCACAATCCTTGTCAATTTTACTCACTGGTTCTTGCTTTGTTATTCAGGATCACCTTCAATCCAAGA TGATTGGCAAAGGTGACATGACACAAGGCCTCTATTTCTTCAAATCTTGTTCTCATGCCAAGGACAATGCTAAGCAATTA CCAAGTTCTGTTCAATCTGTTTTTTCATCACCACACACACAACATTCTATTTTCCCTGTATTTGATGCTTCATCACTTTC AGTTTTACCTGTATCTGTTGATTCATTACTTCCATCTACAAATACTGTAAACACTGTTTTTGAATCAAATAAAATTGCAT CTCTTTGGAACAATAGAATGGGCCATTTGTCTGATAAAATGTTAAAAGTTCTTGGCACACATGTTCCTTTTTCTATACAT GATACCTTTCCACTTCTCGTTGTGATGTATGTCCTTTAGCAAAACTTCGAAGGCTTTCTTTTCCCTCTAAAAATCATATG TCTACTTCTAGTTTTGACTTGATACACTGTGATATCTGGCGCCCATATCATGCTCCTACGCATAATGAATGCGATTTTTC CTTACTATTGTTGATGGTTGTACTCGCTTCACGTGGGTATACCTACTCCATAACAAATCTGAGGCAACTAACAGTATTAA GGTGCTTTTTGCTTTGGTCAAGACACAGTTTGGAACCACAATAAAGAAAATAAGGACTGATAATGCACCAGAACTTTCTT TAACCAGTTTTTTGCAGGAACAAGGAACCTTGCATCAATTCAGTTGTCCATATAGGCCCCAACAGAATTCTGTGGTTGAA CAAAAACATCAGCATTTACTGAATGTTGCACGTTCTCTAATGTTTCAATCAAAAGTTTCCCTTCCCTTTTGGGGAGAATG TGTTTCCATAGCAACATATCTCATTAACAGGACCCCTTCACCATTGCTCAGTCACAAGACACCTTTTGAATTGTTGTATG GAAAACCACCAGACTACTCCTTGATCAGAACGTTTGGCTGTTTGGTATTTGTTTCCACACAACCTCATGAACGGAACAAG TTCTCACCAAGGGCATATCCAGTAGTGTTTTTGGGATGCCCTCCATGTTGTAAGGGCTACAAGGTATACAATCTTCAAAC TAGAAAATTCAGTGTCTCCAGGGATGTCAAATTTAGTGAGGATATTTTTCCTTTCCATGCCATTTCCTCTCAACATATGG CTTCCAATGTTCCTGACTTCTTCACAGATATTGTCTTACCAAAACCTGCATCTGGTTTTCAAGGGAATCCACCATTGCCT CAACTTGTGAATAACTCACAAGGGGCTGGACCTGGGCCTAGTCTCCCACCACAACAAGACTCACTAGAGGCTACACCTGG TTTCAATTAACATTCTCCACATGATCTTGAGAGTGAATCCTCTTCTTCTTCGCACAATCATGTGCAACCTTTGAGAAGAT CTACACGAGCCACAAAGCTTCCAGCACACTTGCAGGATTATACTATGACTGTGCATTATCCTATTCAGCAGTATGTGTCA TATGATAAGTTATCACAACCTTATAAGGCTTTCGTCAGTCAGGTGGCCAATGTTTATGAGCCTCAGTTCTATCACCAGGC AGTACGATATCCTGATAAAGGTTTTTTCCTCGTTGTTTGTACTGCTTTTGGCTAAACCTTTATGATTCAATCATAGTAAA GCAGATACAGGTTTATCGTCCTCAGGGATTGTGTGAACATTAGTTCCACCAGTTAAACATTGATCTGAGCGGTTACAAAG ATGTTGGATAAATTGTTTTTATGGTTTTTGAATATAAGGAAAGCGGCAAAAGAATGTTTACAGGGATAACAAAGAAGAAA ACGTATTTAGAATGCATTCC
CDS sequence (LotjaGi3g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGTTGGGAAGAGGATAAATGGGTCTGGAATTTTCATTGGTTGTGTGAGCTAGAGGATGGATGTGCAAATCAGTT GTCCTCTCTTCTAAATATGTTAGCATCTTTTTCTCCAATTAGAGGACAAAAAGATAAATGGATATGGATAAAGGAAGGTA ACGACATTTACTCTGTTTGTTCAGCTTATGAGGCTCTGGCGGTTGATTTGTATCTGGAAGAAGATCGCAGCTTTAAACTA TTGTGGAAAGCATTGGCTCCGTCAAATGCAATTGCAGTGGGCTGGAAAGTTTTATTGAATAGGATCCAAACTAAAGACAA TTTTTTCCAGAGGAACATCCAAATAGCAAATTTGTCTTGCCCTTTGTGTGGTGTTGTGAATGAAGGGTCTTGCCATCTCC TCTTTTCTTGCTCGGTGGCCTGGCAGGTGTGGGGTTTAGTTTATAATTGGCTGGGTTTTTATGCTGGCATGCCTTGGCTC TCCAAGGACCATCTTATGCACGTTGTAGGCCTAGGTTCTACAAAGACAAGGTCTGGTTTACCAGTGATCTGGTTATCAGT GGTTTGGCATATTTGGGTGGGGCGGAATGCGAAGGTTTTTGGGGGAGAAGATTTTAATCTGACATCATGTTTTGATCAAG CTCGTTTAAAAGCTTGGTTATGGCTGAAATCAAAGAGCAGGAATTTTTCTCATGCTTTTTCGGAGTGGATTGGTGAACCT ATGGCGTGCTTAGATGATATGTAG
Protein sequence (LotjaGi3g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCWEEDKWVWNFHWLCELEDGCANQLSSLLNMLASFSPIRGQKDKWIWIKEGNDIYSVCSAYEALAVDLYLEEDRSFKL LWKALAPSNAIAVGWKVLLNRIQTKDNFFQRNIQIANLSCPLCGVVNEGSCHLLFSCSVAWQVWGLVYNWLGFYAGMPWL SKDHLMHVVGLGSTKTRSGLPVIWLSVVWHIWVGRNAKVFGGEDFNLTSCFDQARLKAWLWLKSKSRNFSHAFSEWIGEP MACLDDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 207 | 179 | 4.3E-28 | – | |
| Pfam | 57 | 144 | 88 | 8.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0188400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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