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LotjaGi3g1v0192200.1

Overview

Field Value
Gene ID LotjaGi3g1v0192200
Transcript ID LotjaGi3g1v0192200.1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH37|ILR3_ARATH Transcription factor ILR3; TrEMBL-Plants: tr|I3S2F0|I3S2F0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0192200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:27783670..27789111) extracted from Lotus japonicus Gifu genome v1.2.

GTTTTAGGCATGGCGTTTACTTGGCTCCTCTGGACTGTATCAACGTAATACAATGTATGGCAATTGGCCATGGCGAACAG TGCTAGCACGACACACAATCTTCTGCTTCCGTCACCAAAACTCACAAATCGCAATCACTCACAAACAATGACTTTCTCTT CACTCTTCTTACAAGGGACATTTTAAACAAAACAAAATGCCAAACGAACAAATCAACATTGTTCAATGTTAGTTACATTA CATAGTAGTAGTATTATATTATTCTCACGCTATTATTTTCACAGTAATTTCACTGCTCTTTAGGTTCCACTTGATATATA CACACATTCTCCTCCTACTCTTACCTTACATTATTGCTCCCAACAACAATGGAAATTGATTCCTCAGGTGATTCCTGTTG GCTCTATGATTATGGCTTTGATGATATCTCTGTTGCTGCTGCAGCTGATTTCATGGTTGCAGACTCTGCTGATTTCACCT GGGTTCCTTCCAATATGAAGTGGGTTTGGTTTTGTATTTCTTTATATATTGTTCACTAGAAAGGTCAAACCTTCATTAGA AAGCTAGAACCCCAGATTATGATTAAGTGAATCATGACATGATGGTTGATTTGTAATTTCAGCTTGGAAATGGAATACTC ACTGGATTCAACTGTCTTCGAAAGTGGCCCTTCAAAGCGGTGATTTCTCTTATTTTGTTCTGCAAAGGATATGTGAAGTT GATGTTGTTCCTTCACAACTGTTTGACTATTGTGTAGTGACTTCAAAGTTTTGTGATTTGGCATTTTGACCATTTGATAT ATGAACCAGAACTAGAAACTTTTTAAAATTTTATACAGCTTTGACTTTTGTATCTTGAGATTCTGTAGCAATTGAGCACC CAATTATTCAAATTATTATGCAGACTAGAAATATACATACTGTTTTCTTTCTCCATGTGAGTATAGAAGAAATTAATACT TGAAGTGTATAAGGGTTTGAGTAAAAAGATTCTTCAAGTAAACTGAAGCTTGAAATGATGCTTCTAATTTCCTCTACTAG CAGCCATTAAAGAATCTAATTATTAAAATTGTTTCAAATATGTTAATTGATGTACTTCATAAATTTGGAGATCAAGGAAG CCAGTTATGTTCCTTTCTTACTTTGTTTTCAGTGATTATGTTCATACTTAGTGATCTGATGACAAGAAATATACTTCTCT ACTATGCCTGATTTTGTCAATTACATGCATTTAAGTTCAACTTTAAATTTGACAGGCATGGTTGGGCTTGCTGAATTACA TGTGTGCTGATTAGTGACTAGCTTTGTTTTGCATCAGTCAAAAGTCAAAACTAAATGCATAAGAATCATGCTAGTTGCTG ATAAAATGTGATCTTGAACTACTGTTTTCTTTCCTCCAATTATTTATGTGTTAATTGATTGAGAAATCAAGCATTTCAAT TAGTCCGGTTTTTTCAACTCAAAATTTGTGATTTATTAGCCTTCATGTGCTTCTTTTACTCTGTCACCCTTCCCTTTCTT GTCATGATTTTCCCTAAATAAATGATATGAAACTGTTACTTCAGGTTAAGGACTGAATCAAGTGTGTCTGGCTCCAAGGC ATGTCGTGAGAAACTACGAAGGGATAAACTGAATGAGAGGTATGCTATTAATTTGCATGTAATCTGATTTAGTTCAGACT TCTGAATCTCATTTCTTCAATTTGACATAACTTCAAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGGCAGCCC AAAACAGACAAGGCTGCTATAATAAGTGACGCGGTTCGAGTGGTAACCCAATTAAGAAATGAAGCTGAGAAGCTGAAGGA AATGAATAACGATTTACAAGAAAAAATTAAAGAGTTGAAGGTGATTTTCTGTTTATAATGGTTATGTCGAAGTAATATGG TTATATATTAAATTTAAGGCTATACTTTGTATTTCTAAGAAAAAGTGCCATGGTTCCAGTAATTGTGAGTGCAGCTCGGT TAAGTATTTGGTAGGGAGAGCTTTGCCTCACATAGTCCTATCCGGCTTGAATATGATTAACTCCGTGGAAGATATCTGTG GTTTAAATTACAAAAAAAAAGTGGCATGTGATTATGTGTGAATTGAAGTTCTGAACTCATGGTTCCTTGCAGGCTGAGAA GAATGAGATTCGTGATGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGTTAGAGAAGAAGGTCAAATTGAGAAATGTAC AGCCTGGCTTCCTCCCTCACGCCGACGCAGCTGTTAAAGGGAAAGGTGCTGCTAGCCACAAGCTGATACCTTACATTGGT TATCCTGGAATTGCCATGTGGCAGTTTATGCCCTCTGCTGTACTTGATACATCAAGGGATCATCTTCTTCGACCTCCAGT TGCCTAGAGTGGTTAGCATCCACTTCTTTGCTGTATGTGTGCTTTGCTTGTATAATATTTTTTCCAAGTTATTCACTATG TCTCTATTATTGTGTGTGGCTGAAAGTGTTATTGGAGACTGCTTGATTTGATAAATTTGTGCTTCTACAATCTAAACTAT AATATGAAACTGGTATGGTCATGGTTTTTCTCCGATTTTGGTCTTTTCCACGTTAAGGTCTTGTCTTGTGATTGTGTTCC TGTTATGTTTCTCTATGATGCAATTTTCCTCATCATACTTATATAGTGGGCATGGGAGGTAAATTAGTTTTTGGGGTGTA TTGTTGTATTGGAAAATCCCCTTCAAGTACCCTGTCCTGTTCCTGGTATAGTTCAAGTAGTTCACAGTCGTTTTAATTTT GTATAACAAAGTTTGAAGACTCAAAGTTGCTTAAGGTGCTTGTCCTTGGTAGGATGATCAAAAAGTAGTTTCAACAATAG GATATAAAAGCAAAGCAAATCACTTTGTTGATGAGACACATTAAATAAACCAATAAAGCAAGCTTGTATTTCACTGAAGT AGTTTGCAATAACCACACCACAACAACAAGGACAAAACACCAAAAACAATTTTTCACACAAGATAGGCTCAGCAGCAATG GTTGGGTAAGATTTTCCCCATCCTTAGAAAGCTATGAACATAATTAGAAAGCTTAACACTATCGCAACGGAGGCTTGTAG ATCGCCATTCCTGGTTGATGAAGCTGAGAGGTCCGACGATTTTTGTGCTTGAGCTAGAGGCGAGGCAGCAGCTGGAAATT CAGTGGATGGAACAACTGGAGAGAATGAAGGACTTCCCAAATTTGTTTCAAACAATGGACTTGGAGCTTCATGGTTATTA TCTTCAGGAGATTCAGCAGGTAAGGTAGTAGATTCTTCTGGAGATTCAGAGGGAATGATGGAAGAAATTGTTGGGGAATC TGCGAGAGGAGATGCAGCTGGTGAGTCATCAGAAGAAGTTGAGCTGGAAAGGGTGTCTATCTCAACCTTCATTCCTTGGG TGCAATGTCCTATTGCCCCACAAATGAAGTATCTTTTTCCTGGTGAGCTGAGAGGGATGGTTGTGGCACCATCACTGTAA GACTGAATTGGGCTAGTTGCCTGGCAGGAGTCATAATCTGCTTTTGTAACTTCAATCACATTATGGTTTGGCTGGTACTG GAAAACTGCAAATAAAGACGTTATATTAATGTCTTATTTTTCCTCAGAATTAATTATGACACCTAAAATTTAGTCACAGA AGCTTCTTCCTAGAATTGCTTTTGGCTACAATATCAATTATAGAAGGGTTTCCAAACATGCTATAATAAACAAAATGTTA CATTGTACTTCAACTTGTTAAGCAAAAAGGTAATGTGTCGTTTATTAATTAAGCAAAGCCTGAAGCAGAATTTTGTTTAA CTGATACATGTTAATGACTTACTGAGATTGTCTCCCACTGAAAATTGTTGGGATGTTCCCCATGATTGAAGGTTTGAGGT TGCATCCCACCCACCATTTGGTCCTCCAACAATGTGATCCGTAGCCATGGCCAATTTGATGAGTGTAGCAACCAAAGATA ACCTGATAATGACTTGAAGTACACCCATGTTTGCTAAATGCCAAGTATGGAATGTCAAAGACAGAGATGAGAATTGATCA ATATCAATTGAATAGATATGATTGATTGACTTATGAGTGTAGACTGTTAGAGGCTTATATAGAGAGGTATAAAGGAATTG AAGGCTCTTTAGAATGATGATGATGATGATGATGTGTGCTTGTGATTCATTCTTGCAATGCTGGAGTTGGTATTGTCATG CAAATGAGAGGGATTATCTTATTTGGAATTCAAGCACTCTTTCTTGCCTGTCTTGACTCTTCCATCTGATTCACTATCTT TTAATTTTTCTGGCAAATAGGCAAAGTGGGGGGAGTTTGGGTGGTTGATTCCTGATGGGTTCACAGGTGTAGAATTTTCA GGTGATAGTTGTTGGATTCACAACAACTCAAGTTTGGCACTTTCCAGATTTACAATTTGAAGCCTATTTTATTAAATTCC ACAATCAGAATTTTGTGGCTTAGTTCACTTGCACCCTAATCATTCTACCCAAAAAATTTCATCAGGAGGTTGTCTCGAGT CTAACCAGTTCCCTCACTAGAAGTGCACCTAATCCAAATATGCAACCAACCCATCTTGAATTATTTTTTAAGATGATGGC AAGTAGGAATTTAAGATAGAACAGGAACATTGTAGTAAAAATGAAGAGGAAATTGGTATTTAGTTATTTACTGACATTGA AAAATTGCATTTAATGTATGTAGGCAAGCGCAACAATAATAATTTGATGATATCCTGTTGGTGGAAAATGGAATTACACC ACGATTCAGAGCTAGCTTTGAGTTAAAACATGAGCTGGTCATGATAATATGTTAGGAACCACTTTAAATCTCAATCTGAA AGTTTACACCTAAGACTATCAGCAATGGTGTTGAATTTGTAGTGTTTAATGTTGAAATAGGTACGTAATGGTGTTTAATA GAAGTGTTGAAAGTTGAAAGGGGGAGAGAGGAGTTGAAAAAATTCAACACTTGTGAAACCTGCGCTCGGTGACACGTGGC ACGACCTGGTTGGTGACCGCCAGGCGCGTGCCACACACGCGCCGACAAGGCGCGTAACGCTGCAGGCTTGGCAGCGTGTG GGTCCCAGGGCGTCCGGTAGTGGGACGCGTGGCACGCGTCGGTTGGGCACCGACAGGCGCGTGCGTGACACGCGCCTGAG GAGAGAGAAAGGGCCTGCAACGTTACACGTGTCACATTTTTATTCGTCCGGGCGATTTTCGTTTATCCTAATCTTTCCAA CTCAATTATTTCATTCAAAAAAAAAAATTTAAAAATTTTAAAAATTTACCAAAATTCATGATTTTTTTTTTCTATAAATA GAGACTTGGTTCGTTTGATTTGGACACAGAAAAAAAAACCAAGTTTTCCATCATCTTATTATCTTTCTATTATCCTCTTT GC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0192200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAATTGATTCCTCAGGTGATTCCTGTTGGCTCTATGATTATGGCTTTGATGATATCTCTGTTGCTGCTGCAGCTGA TTTCATGGTTGCAGACTCTGCTGATTTCACCTGGGTTCCTTCCAATATGAACTTGGAAATGGAATACTCACTGGATTCAA CTGTCTTCGAAAGTGGCCCTTCAAAGCGGTTAAGGACTGAATCAAGTGTGTCTGGCTCCAAGGCATGTCGTGAGAAACTA CGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGGCAGCCCAAAACAGACAAGGC TGCTATAATAAGTGACGCGGTTCGAGTGGTAACCCAATTAAGAAATGAAGCTGAGAAGCTGAAGGAAATGAATAACGATT TACAAGAAAAAATTAAAGAGTTGAAGGCTGAGAAGAATGAGATTCGTGATGAGAAGAATAAGCTGAAGCTAGACAAAGAA AAGTTAGAGAAGAAGGTCAAATTGAGAAATGTACAGCCTGGCTTCCTCCCTCACGCCGACGCAGCTGTTAAAGGGAAAGG TGCTGCTAGCCACAAGCTGATACCTTACATTGGTTATCCTGGAATTGCCATGTGGCAGTTTATGCCCTCTGCTGTACTTG ATACATCAAGGGATCATCTTCTTCGACCTCCAGTTGCCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0192200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEIDSSGDSCWLYDYGFDDISVAAAADFMVADSADFTWVPSNMNLEMEYSLDSTVFESGPSKRLRTESSVSGSKACREKL RRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIRDEKNKLKLDKE KLEKKVKLRNVQPGFLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46133
4 226 223 7.2E-98 –
PANTHER
PTHR46133:SF10
4 226 223 7.2E-98 –
SUPERFAMILY
SSF47459
60 136 77 2.22E-13
IPR036638
ProSiteProfiles
PS50888
69 120 52 12.652
IPR011598
Pfam
PF00010
73 120 48 6.7E-9
IPR011598
CDD
cd00083
73 125 53 6.0816E-8
IPR011598
Gene3D
G3DSA:4.10.280.10
73 153 81 9.9E-12
IPR036638
SMART
SM00353
75 126 52 1.1E-8
IPR011598
Coils
Coil
110 165 56 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0192200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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