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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0192400 |
| Transcript ID | LotjaGi3g1v0192400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline-rich family protein; TAIR: AT3G22070.1 proline-rich family protein; Swiss-Prot: sp|Q0J9V6|Y4294_ORYSJ Uncharacterized protein Os04g0629400; TrEMBL-Plants: tr|G7IKM4|G7IKM4_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi3g1v0192400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27794587..27798091) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACATGACTAATCATATTAAAGAGACTTCTTAATCCAACTAATAATAGATGCATAATGGTAAAATTCTAGATGAAAA ACGTTATAAGCCTAAAACATGCTTAGAACTAGAAGGAAAAAAACTCAATTTACCAAAATATGTATTGCCAACTAACATTT AGCCTATATAGGCTTAATCAAGTTTTTGGTCCCTAGCCTTTGTCATGAATGTGGCTTTAGTCCCTCGCCGGAGCAAATGT GGGCATTGGTCCTCACTTTTTTTGCAAAATAGTTGCCTTTGGTCCTTCCGGTCGGTTGAGTCAACGTCGGAGCTCCGTTA ACTGATGTGGCATTGCCACGTCAATTAAGGAGGTTCAGATGACTTTTTTTTCTTTTTCATTTTAAAAAATAAAATTAAAA CACCATTAACCCTCACTAATTACTCACTAATTAACTTCCTTCTTAATTAATTCAAAAAAAATCTATCTTCTTATTCATCT TCTTCTTCAACCCAGATATGTCTGGTTTAAAAAAAATCAGATTTTTCAAAAACAAAACCCCATATTCTCCCAGCCTCTTC TTCCTCCTCTTCCTCTACCAGAACTTAAAATCCATCAAAATTCCACAGGAAACAATTACCCATCTAATAATCTTTCAACA CAATGATACAAGAATCTAAGCTCTAACCATGAAAAGAGATGAATTTACAATTTGTAAATGTTGCCCACAAAACCCATCAA TGCTGCATTATTCCAGCAATGCACCCGCACAAGCAGTATGTTCCACAAGAATCTGAAAACCTTCCCTTGCTTTAACAACA GACAACAATGTTCCAGCCATCCCATTTCACGACTACCCAGCAAGGTGCTTAGAACCACCCTTCGACTAACAGCAACCAAC AACAAAAACACAGTGCATAAATTGTAAACAAGTAATATTCACAGACCTTCCAAACAGAGTAAAGTTTGGGTAGACCACTC AGAAAGTGATGAGCTGAAACCACACACCTCTAATCTCCCCTTTCTCTCCACCACCACCAACCGCCGAATCCCTCCTCCTC CAAATCGAAGGGAAGAAGAAGCAAACCCACGAAAAACTTCTTCCTCCTCCTCCAGATCTGGCCCCCTTTTCTCTACCCAC CGCAACCCATATCCACCATACCCATAATTCCCACCCACCATGACCATCGAAACTCCCACCCCCCAAAACCCATAACCCCA ACCCACCGCTACCATACCCACATCGCAGATCTGAAAGAAAAAAGAACGACGAACCTAGAAACACCACCAAGCTGAGGCAG ATCGAAACCCAGGGGGAGAGGGGGGAGGTTGAACGAAGAGGGGGAGGATGTTGATGATGGTGAAAGATGAAAGATGAAAG ATGATGATGATGAGAGATGTGTGGATGAATCCAGAAGATGAAAAATGATTTTTTTTTTTAAATTAAATGAACGACTTAAT TAAGGGTTTTAATTATATTTTTTTTAGAATTTAAATGGAAAAAAAGCCACATGGACTTCATTAATGGACATGGCAAGGGT CACATCAGCTGGCGGAGTTCCGACGTTGACCCAACCGACCGGAAGGACCAAAGCCAACTATTTTACAAAAAACTGGGGAC CAATCCCCACCTTTACTCCGGCGAGGGACTAAAACCATATTTATGACAAAGGATAGAGACCAAAAACTGAATTAAGCCGC GTATGTATATAGAAGTGCTTACAACTCATCACATAGACTATCGGTAACATTAATGTGACTAGCATAGCCAAGAACTAAAA TGTCATCGTGAAATCGCACCGCACTACCAACACCACCATTGTACATCTCCAATTTGATTCATATGATAAAAATGGAGAGA GTAATTCATAAAGATGAAAGCGTCCTTGACATTGGTTCATATATAGCATTGACAATTCCACTTTTTTCTAGTGCCTAATT GCTCTTCACATGCTCACATTTAAGAGTCCACAATCCATTTAACTCCCTCATTCTCTACCCATATTTATAAGCCAATCCAT TGACAATCTCACACACAACACACTCAGACTCACTCACTCACTCACTCTCTCTTCCCATCCTGAAAACGCCATGAGAAAAA GACGAAAAAGAACCCACAAGACCCACACCCATTTCTGCTAAACAAAATAGAACAGATAGGAATTGGAGAAAGAGTAGCAG CTGTACTAGATAAAGAAAAACCAAGTTCATTACAAGGACAGACAAAAGCCCCCACCATCACTCTCTTACTGCAGCAGAAC AACAACAACAACAAGTTCAGAGGAAAAAGCTGAGAAAGCAAACATGTGCTACGTGGGGAAAGCTACAAAGATCTTCATCT TCATTGTCACCGTGCTCGTTGTTTTCGGTCTCCTCTTGGGATTTGGGATCCTGCATCGCCGCCACCATAACAACAACACC GCCAAATGCTCCGACGGCTCTTGCAGCTCTTCTTCTCCGGCAACCTTGATCCCAACCCCAGATTTCAACCCACCGAGCTC CCCTTTTCTCCCTGACAACCCAACCCCTCCGCCGCCGCCAGCTCCTCCCACCGCCGCCACCACCCCACCGGTGGAAAATC CAAACCCTCCCCCTCCTCCTCCGACTCCGGCTCAGTCCGACCCATCTCCGCCGCCGCCTTCACCGCCGTCACCATCTCTG CTGCCGTCTCCTCCGCCTCCACCGCCGGACACTGCCGCTCCGAATCCTCCGAGCGTGGCGGCACCGCCTACGAGAACACC GACACCAGGTTCGAATCTAGTGACTCCAGGTCCTGTACATGCTATTGCTTAATTAGCTAGGTGAGCTGCATTTTGCAGCG GTTGATCGGTGACGGTAATTGAAGACTCTATAATTTTCTTGATGCCATTTTTGTTGATTTGGGGAGGAAAAAAAAGAGTA AAAATTGAAAAGTGGATCTGAGTGTTTCTATTTTTTTCACATTTTTTTTACTGAGTGTGATGGGGAAAAGCATCTTTGTA AGCTGGTCTAGTAAATTTACAGAGCAGTCCTTGGTATCTATATTGATTTTCAATCATCCCCTTTTTCTTCTTGTCTTGTC TGAATATTCCTTTGATTCACTTCATGTAATTGTTTACCATTATTCTTAATTTTATTTGACTTAGTTAATTACCAAATTAT GATCACAAAGCTCATGAATGTGTGAGGGAGGGATCCATATCCTTTGTTCATAGTTCCAGTTTCAATGTAAGTCCCACCAG TTAAAAAAATTGGCATAATTATCTTCATATCGTTATCCTTAAAGGAGAAGTGTTAAGTTTTAATTGGTGAGATAGAGTTT TTGAACAACTTGTCTAATAGCTAGCTAGATCGAATACAAGTTTTAGAAAAGAAATTGCAATGTATTCGGAAAGTGGGAAG AACGTGAAGAACTAAAAAGGTGCAGATTTCCTTGTAATTACTCGCAAGAATTGAATAAGGGTATGGGGGATGCATTTGGT TCAGTATGACTAAAAGACAGTATATTGTGTTAGTGCGCCTTCTCAATTATGCATGTTTGTTTTGG
CDS sequence (LotjaGi3g1v0192400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTACGTGGGGAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTGCTCGTTGTTTTCGGTCTCCTCTTGGGATT TGGGATCCTGCATCGCCGCCACCATAACAACAACACCGCCAAATGCTCCGACGGCTCTTGCAGCTCTTCTTCTCCGGCAA CCTTGATCCCAACCCCAGATTTCAACCCACCGAGCTCCCCTTTTCTCCCTGACAACCCAACCCCTCCGCCGCCGCCAGCT CCTCCCACCGCCGCCACCACCCCACCGGTGGAAAATCCAAACCCTCCCCCTCCTCCTCCGACTCCGGCTCAGTCCGACCC ATCTCCGCCGCCGCCTTCACCGCCGTCACCATCTCTGCTGCCGTCTCCTCCGCCTCCACCGCCGGACACTGCCGCTCCGA ATCCTCCGAGCGTGGCGGCACCGCCTACGAGAACACCGACACCAGGTTCGAATCTAGTGACTCCAGGTCCTGTACATGCT ATTGCTTAA
Protein sequence (LotjaGi3g1v0192400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCYVGKATKIFIFIVTVLVVFGLLLGFGILHRRHHNNNTAKCSDGSCSSSSPATLIPTPDFNPPSSPFLPDNPTPPPPPA PPTAATTPPVENPNPPPPPPTPAQSDPSPPPPSPPSPSLLPSPPPPPPDTAAPNPPSVAAPPTRTPTPGSNLVTPGPVHA IA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 161 | 161 | 7.3E-34 | ||
| PANTHER | 1 | 161 | 161 | 7.3E-34 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 162 | 132 | - | – | |
| MobiDBLite | 38 | 162 | 125 | - | – | |
| MobiDBLite | 40 | 56 | 17 | - | – | |
| PRINTS | 51 | 63 | 13 | 1.1E-12 | – | |
| MobiDBLite | 57 | 143 | 87 | - | – | |
| PRINTS | 65 | 81 | 17 | 1.1E-12 | – | |
| PRINTS | 86 | 98 | 13 | 1.1E-12 | – | |
| PRINTS | 105 | 126 | 22 | 1.1E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0192400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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