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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0192900 |
| Transcript ID | LotjaGi3g1v0192900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G22100.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LRJ4|BH117_ARATH Transcription factor bHLH117; TrEMBL-Plants: tr|A0A0L9UMQ8|A0A0L9UMQ8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0192900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27823914..27824916) extracted from Lotus japonicus Gifu genome v1.2.
ATATATTAGTACTACACTACACTACCTTGCACACTCTTCATTTTCATCCTCTCTCCGATCAATGGACCCCATGTTTTCCG GCGACTCCTCCGCCTTAGACCCTATGTTTTCCGGCATCAGCCTCCACCACCTCCTCACCCTCAACCCCTCTCTCTTCCCT GACCAACAACCCAACCTCCACGCCGCCGACACCATCAACCTTCTCACCCCAAAATCCGAGTACCCCAACTTCGAAAACCA CCAACAACAACAACTCTTCACTTCCTCCTACCCTGATTACCCTCCTGAACAACCCTTCAACATCTTCCCCCACTTCCAAC CACCACCACCACCACATTTCCACCACCTCCCCCAACTCCACTCGCCGGAGACTCCCTACCGGAAACGCTTCCGCCATCAG GAGATAGAAACCTTCTCTCCTCCTCCTCCTCCAGCACCGGCGGTGATTCTTCAGAGCCACCTTGCCCGCCAGAGGAGGCA GAAGCTGAGCGAGAAGACACGCTGCCTGCAGAAGCTGATGCCATGGGACAAGAAGATGGACCAGGGGACCCTTCTCGAAG AGGCCTACAAGTACGTCAAATTCTTACAAGCCCAAACCTCCGTCCTTCAGTCCATGCCCACCACCACCCGTTTCGCCGCC GCCTCCGCCGGCGGCGTTTTCGGCGAGATGGAGAGGCTGAACAGGAGCCAGGCGTTGCAGATTCTGGTGAACTCGCCTGT TGCTCAAACCATGCTTTACTCAAAAGGGCTCTGTGTTTTCTCTGTTGAACAGGTTGCTTTGCTCAGAAAATTTACAGAGA GAAAGCAGCATCAGCATCAGCATCACCATTTCCATCAGAATCAGATTCAGGAGCAGGAACAGGAGCAAGAAATGTCTGAT CATGATTCCTCCAAAACTTTCTTGAACTAATTAGCATTTGGGTTTCTGGGTATGAATCAAGGTGTTTCCTTTATCAAACA CCAATTTTGGGTAGTGCAGTGCTTACTCTCTGTTTCTGTCAAT
CDS sequence (LotjaGi3g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCATGTTTTCCGGCGACTCCTCCGCCTTAGACCCTATGTTTTCCGGCATCAGCCTCCACCACCTCCTCACCCT CAACCCCTCTCTCTTCCCTGACCAACAACCCAACCTCCACGCCGCCGACACCATCAACCTTCTCACCCCAAAATCCGAGT ACCCCAACTTCGAAAACCACCAACAACAACAACTCTTCACTTCCTCCTACCCTGATTACCCTCCTGAACAACCCTTCAAC ATCTTCCCCCACTTCCAACCACCACCACCACCACATTTCCACCACCTCCCCCAACTCCACTCGCCGGAGACTCCCTACCG GAAACGCTTCCGCCATCAGGAGATAGAAACCTTCTCTCCTCCTCCTCCTCCAGCACCGGCGGTGATTCTTCAGAGCCACC TTGCCCGCCAGAGGAGGCAGAAGCTGAGCGAGAAGACACGCTGCCTGCAGAAGCTGATGCCATGGGACAAGAAGATGGAC CAGGGGACCCTTCTCGAAGAGGCCTACAAGTACGTCAAATTCTTACAAGCCCAAACCTCCGTCCTTCAGTCCATGCCCAC CACCACCCGTTTCGCCGCCGCCTCCGCCGGCGGCGTTTTCGGCGAGATGGAGAGGCTGAACAGGAGCCAGGCGTTGCAGA TTCTGGTGAACTCGCCTGTTGCTCAAACCATGCTTTACTCAAAAGGGCTCTGTGTTTTCTCTGTTGAACAGGTTGCTTTG CTCAGAAAATTTACAGAGAGAAAGCAGCATCAGCATCAGCATCACCATTTCCATCAGAATCAGATTCAGGAGCAGGAACA GGAGCAAGAAATGTCTGATCATGATTCCTCCAAAACTTTCTTGAACTAA
Protein sequence (LotjaGi3g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPMFSGDSSALDPMFSGISLHHLLTLNPSLFPDQQPNLHAADTINLLTPKSEYPNFENHQQQQLFTSSYPDYPPEQPFN IFPHFQPPPPPHFHHLPQLHSPETPYRKRFRHQEIETFSPPPPPAPAVILQSHLARQRRQKLSEKTRCLQKLMPWDKKMD QGTLLEEAYKYVKFLQAQTSVLQSMPTTTRFAAASAGGVFGEMERLNRSQALQILVNSPVAQTMLYSKGLCVFSVEQVAL LRKFTERKQHQHQHHHFHQNQIQEQEQEQEMSDHDSSKTFLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 256 | 253 | 1.8E-71 | – | |
| PANTHER | 4 | 256 | 253 | 1.8E-71 | – | |
| ProSiteProfiles | 126 | 175 | 50 | 11.928 | ||
| Gene3D | 130 | 185 | 56 | 1.9E-7 | ||
| SUPERFAMILY | 131 | 189 | 59 | 3.53E-10 | ||
| SMART | 132 | 181 | 50 | 4.2E-6 | ||
| CDD | 132 | 178 | 47 | 9.42837E-6 | ||
| MobiDBLite | 249 | 282 | 34 | - | – | |
| MobiDBLite | 257 | 275 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0192900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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