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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0194400 |
| Transcript ID | LotjaGi3g1v0194400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G01360.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8LED3|TBL3_ARATH Protein trichome birefringence-like 3; TrEMBL-Plants: tr|I3SZR6|I3SZR6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0194400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28225485..28227946) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGAGAGACTCAGCTTCCTATCTTCAAGCTCTATTTTCAAGTTCAAAACATGTCCTAGAAAGCACAATAAACCAAAA TCTAGTAAGTTATAACTTCACCAATGCCATAACTATCGTTGTTTCTTACTAATTTGGCTCTAATGCAGTGATCTCCCATA ATGTGGTTGACCAACAGATGAGAGAAAAGTAGAGGATGTGCTTGTAAATGCCTCATGGAATGATGATAGGTTTGATTTTG ATCCAGAGGAGTGTAATCTTGCTAATGGAAAATGGGTTTTTAACCATTCAATAAGGCCTTTGTACTCAGATACTAGCTGT CCTTACATAGATAGACAATACTCTTGTGTCAAGAATGGAAGGGAAGATTCTGACTACCTCCATTGGGAGTGGCAGCCAGA AGATTGTACCTTTCCCCAGTGAGTCTCACCCTTCAACATGTTCTATTCATCTTTCTATTTTTACCATTGAGGTCTGTCTA AATTTACTATGTGCATGTTTGGTTCTCCAGTGGGAACCCCAGAATCAATTCTCAGTGAATAAAATCACTTTTGTATGACA ATATAGATCCTTGAGAGTCATCTCTCATAGAAGCCGGAGAGAGTAGCTTATGTGTTAACATAATCAATTATGAGATTTTA CAACTGGATTTCACAACATTATTCCTACAAAAATCACTTTTTTTCATAAATGTATCAAAACATAAACCACTTCACTTTTA ACTCGTTTCAATTCATTTTGAGCATAATCAATTTTACCGAAATCAACTCTATTCAAAATCAATTCTCACAACACTGATGC AATCAAACACGCATTATATATTTGGTAGATTTAATCCAGAGCTAGCCCTCAAGAAGCTTCAAGGAAAGAGGCTGCTATTT GTAGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGTTTGGTCCAAAGTATCATACCTGAAAAGGAAAAGTC AATGAAACGAGGGCGTATTCATTCAGTCTTCAAAGCCAAGGTAAATGATATATTGAGTAAATGGTCAAAATATTCAAGCA TTTCAAACTCTAATAGATGCTCTTATGGTTCTGAATATAATTGCCAAAAAACACACAAGAATAGTTCCTAGGAACTTTTT TTTGAGTTGAACATATTGCTTAACTCTTTGATATCAGGACACTGAGCTGAAAAGCAAAGCTAATTCTTGTAGGAATATAA TGCTACCATAGAATTCTATTGGGCCCCATTTCTTGTTGAGTCCAACACTGACATTCGTATCATAGGAGATCCCAAGAAGA GGATAATCAAAGTGGATGAAATCACTGAGCGTGCCAAAAACTGGACAGGAGTGGACATCCTTGTTTTCAACACCTATGTT TGGTGGATGAGTGGTCTCAGGGTTAACGCACTGTAAGTACTCTTTGAGTCTAGCATTACTTGAAAGAAATGATTCATAGA CATTTGTATAGTGCAGACATCTAACAGGTATTCAAAGTGAGAAAAGAAAACAACCAAGAAATAATGGATGTGATAAGACG AGCAAAATAGAAAGAAAAATAGTGTGTTTGTGATTCTGTTGGTCATCTGCGCTATTTGGTGTCTAAGTATCATTACTCAC TTTTTTTACAAGATTTGATCTTTAACCACAGGGTTGAAATGCTGTCTAATGTATAGTTTAATTGCAGATGGGGTTCATTT GCCAATGGAGAACAAGGGTATGAAGAACTGGATACACCAGTTGCTTACAAGCTAGGTTTGAGAACATGGGCCAATTGGGT AGACTCCACAATCAATCCAAACAAAACCCGGGTGTTCTTCACTACTATGTCCCCTGCACACACAAAGTATCTTTCTGTCT CTCTTTCTTTACCAAACTTCAAGTTTCAGCTTTCTATAACAACTTATGTTTTATTAGCATTTGGATCAATTTCTCTTTCT TCAGTCTTCAGAATCCATTCTGACACCTGAAGCTACTAACAAAAGCTTCTCACCAGAATTGATTTTAGCTTTAGAATCAA TTCTACAAGTATTTACAAACATTCACTTGTCAAGCAAGATTAGAAAGAAAAAAACTGAAATTTAGTGAAATCTAGACATA AGAAGATGATGATTCTAATTTTCTAACAATTTAAATGTGATATGTTTTCAGAAGTGCAGACTGGGGCAACAAGGATGGTG TTAAATGTTTCAATGAGACAATGCCTGTAAAGAAGAAGAATCACTGGGGAAGTGGTTCTAATAAGGGTATGATGAGTGTG CTGGCCAAAGTGGTGAAGAAAATGAAAGTTCCTGTGACTGTCATCAACATCACACAAATCTCAGAGTACAGGATTGATGG TCATTCATCAGTTTACACTGAAACTGGGGGTAAGATGTTAACTCAGGAGGAAAGGGCTAACCCACTAAATGCAGATTGCA TACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTTGTAA
CDS sequence (LotjaGi3g1v0194400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGAGGGCGTATTCATTCAGTCTTCAAAGCCAAGGAATATAATGCTACCATAGAATTCTATTGGGCCCCATTTCT TGTTGAGTCCAACACTGACATTCGTATCATAGGAGATCCCAAGAAGAGGATAATCAAAGTGGATGAAATCACTGAGCGTG CCAAAAACTGGACAGGAGTGGACATCCTTGTTTTCAACACCTATGTTTGGTGGATGAGTGGTCTCAGGGTTAACGCACTA TGGGGTTCATTTGCCAATGGAGAACAAGGGTATGAAGAACTGGATACACCAGTTGCTTACAAGCTAGGTTTGAGAACATG GGCCAATTGGGTAGACTCCACAATCAATCCAAACAAAACCCGGGTGTTCTTCACTACTATGTCCCCTGCACACACAAAAA GTGCAGACTGGGGCAACAAGGATGGTGTTAAATGTTTCAATGAGACAATGCCTGTAAAGAAGAAGAATCACTGGGGAAGT GGTTCTAATAAGGGTATGATGAGTGTGCTGGCCAAAGTGGTGAAGAAAATGAAAGTTCCTGTGACTGTCATCAACATCAC ACAAATCTCAGAGTACAGGATTGATGGTCATTCATCAGTTTACACTGAAACTGGGGGTAAGATGTTAACTCAGGAGGAAA GGGCTAACCCACTAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCA ATGTTGTAA
Protein sequence (LotjaGi3g1v0194400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRGRIHSVFKAKEYNATIEFYWAPFLVESNTDIRIIGDPKKRIIKVDEITERAKNWTGVDILVFNTYVWWMSGLRVNAL WGSFANGEQGYEELDTPVAYKLGLRTWANWVDSTINPNKTRVFFTTMSPAHTKSADWGNKDGVKCFNETMPVKKKNHWGS GSNKGMMSVLAKVVKKMKVPVTVINITQISEYRIDGHSSVYTETGGKMLTQEERANPLNADCIHWCLPGVPDTWNQIFLA ML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 241 | 238 | 1.6E-138 | – | |
| PANTHER | 4 | 241 | 238 | 1.6E-138 | ||
| Pfam | 5 | 241 | 237 | 4.1E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0194400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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