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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0197500 |
| Transcript ID | LotjaGi3g1v0197500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TIC 56, chloroplastic; TAIR: AT5G01590.1 histone-lysine N-methyltransferase ATXR3-like protein; Swiss-Prot: sp|Q7Y1W1|TIC56_ARATH Protein TIC 56, chloroplastic; TrEMBL-Plants: tr|I3SGF1|I3SGF1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28894633..28902437) extracted from Lotus japonicus Gifu genome v1.2.
ATCAGATTGTTAGTAGACCAAAATTGACTCAATGACTAACTCGACTGCATTTTACTCATTCAATGGCTTATGAACCTATT CCCCTTTTTCCATGGACAAGCATGTGAATGACCAAATTACCTATTTACTCGTTTTCTGTATATTATTTATTTTCTCTTTA TTTCATTTCACTTTTCTTCCTCTCACATACTTTCTAATCTAAACATTTCTTCTTCACACTGTTGTTTTCAATTTCCACTC TCAACCTATCCATCAATGGCTTCCATCAACTTCAACCCATTCGGAGGGAACTGGAACTGGTTCTCAAAACCCTCAAACCC TCTTCCTCCTCTCAACACCCTCCTCACCTTCTCCGACAACCACCACCACTCCCCCAACTTCGCCGCCATCAACCTCTTCC GTCGAAACCCCAAGAAAAAACCCGACAACGACAACGAACCCGGTCCCTACACCCGCATGGCGCACCAATTCTTCTGGGAA TGCGAGAATCTCCCCGACCACCGGCACACTCCAGAGGTCGAGAAGATTCTCAACGACGACCCCGTTTTCGAGAAGAAGGA GAATCCTACAGAGGAGGAAATCAAGGAGAACATGGAGATGTTGGAGAAGATTAAGAGCAGCCCCGTGATGCAGTTTTTGG TTAGAGCGGAAGAGATTGCGGATAAGATGAATGAGATGGAGCTGAAGGAGAATGAGAACCCGTATCATAAGGAGGATAGG GAGCTTTGGAAGGCGTTGCCGAATGTTATCGGGCTCGACGGGAGGCCGATGCCCCGGAAGGCGTTGAAGACTAGGCAGGA GGCTCATGATAAGTTTTGGGATTTTGCAAGGCAGTTCTTTTTTGGGCTTTGGGGGTTTAGGCAGAGGCCTTACCCTCCTT GTAAGCCTAATGATGCTGCTCAGGCTATTGGGTATAAGAACCTTGAGAAGCGGTACTATGATTGTAAGTTGATATCTGTT TCCATGTTTTGTGCTTCAGTGTGTAATGTGTTGGAATGATGTTCTAGTGTGATAGATTAGTAGGATTTATGACCTGTTTG GGTAAACAACTTACTTAAAGGCTTAAGCGCGCTAATTTAAGAAAATTATTGAAATAAGCTGAAAATGGGTTATAAGTAAG CTGTAAGCATAAACTAATCTGAATAGCTTATGAAAATAAGCTCAGATTAGCTTATAGGTAGGCCATAAGCTATTTACATA AGCTTTGTCAAACACTTGGATAAGCGCTTATGTTATAAGTTAAGCTCAAATAAGCTGTTTTAAATGGGGCCTTATATAAT GATAATGTTGCCAATAAGTGTTGGGCTTAGTTGGCAGGATGCTAGGATTGAACAGCATTGACAGAGATGGTGTTGGGTAG GTCTTTGGTTTGATTCCTGTTGGCGAAATGTGTGCATGAAAATGTGGATGAGTTTAATTAGTATACCCTAACAATGTGAA TGGTTTTACACATACGTCTAATTACATCTCACCATATTACCTTTTTATCTTTAATTTTGATTAATTATTTATGATGTGGT AATATGATGAAGCCTTATAATCAACGGATTCAAGTTGTACATGCTTGATTCCGCGTATGCAAGGTCTTGGGTTCGAGTCT TGTGTGTATGGAAAAGAACCCTCACTAGGAGAGGTCTGGCCAAGATGTGGATGTTCCCAGCTCTAACAAGATTGTCTCCT GTGGAGGACACTTTTGAATGTGTGGAGGACACTTTCGTGTCTGGCTAAATAGAAAATGTGATGAAACCTAGTTGAATGCC TGTGAAAAACCCGATTTACCCTATCATTGTATAGTTATTAAACTCAATGTATATATTGAAATAATTGAGGTACTTTGCCC ATGGGTTTTGGGTTAATTAATTGGTAGGCGTGAAAGCCTTCACAGCAAGGTCTTGCTTGGGTTTCATTCCTGTTGGTGAT CCCTCACTGGTAGGGAATCACTAATTATGGTGCACCCTGTCTTTGTTGTGGAACAACCTATCCACCTCTCAAGATTTTAA TTTTGCCAATAAAAAAGAAAAGAAGTATTTAGGATTATTTAGAATGGACAGTGGTGCATTGTTTGTTGAATGTTTTGTGA TAAAATATTGAGCATTAAATGCGACTGTTCCATGTGTCTTCTCATCTTTTGTGCTGGCTGTTTGTTGTACTTGTATGATA TTGATTTCATTTTCCATTGGATTTAGTTATCATGAGGAGTGGTGGATTTTACTATAAGGATCGTCTGGGTCGAACACGAG GACCGTGTGAGTTGATTCAACTTAAAACTGCATGGGGTGCTGGGATTATTGATAAGAATACTTTCATTTGGGGTGAGGAT ATGGATGAATGGGCACCCATTCACATGATTTACGGAATGGAGCGTGCAGTTGCTACCTGGGAAGGTCTGTTAAATTCACT CATTTTTTTCCTTTATATATGTATATTCTTCGATAGTTATTGTTTAGATTTGAGCTCATTATTTTTAGTTATACAACTGT TTTTGGGGGCATGCTAAGGCACGTCATTCTTTGTGATGATTGATGATCCTGCAAAATAAAGCTTTTGAACTTGTGTCTTT CGATGGGTTGGAGCTTAGAAGAAGCTGGAGGAGAAAGATGTCAAATTGATGAACAAGTTACAATCTTTTGTAACAATATG ATACTTTGTACGGGCGTATAGATGATTCATGCTATCTCTCTGTACTTCATGCCCTAGAAAAAATCATGAGATGGGAGGAA CTGGTCTTAAAAGTTTTCCAAATTTTGTGGTCTTATCCTCTCTCAATTGTCAGAGGGAGAATAGAAGGCTATCCAAAAGT GGTTTTGAAACATGTTCTGTTGCAAGTTTCTTAAAATGGAATAAAAAACAGAAGTTAAAACCAGTTTTCAATAAAAATCT TGATAGTGGTTCCTTTAGTTCTTTCAAGAAAAAATGGTAGAATTAAAATAATGTTAAATGCTGCTCTATTATATCTTCTT CCTTAGGGGCATCGTGTTTGTCAGAGGGGTTCGTACCACTATTTCAAACTTCAAATAGAACAATGTATTAAAGTATATTC ACATGCACAAGTTTTCCAAATCTTCTCAAATGGATCTGAATGAAATTTTTTCTGTATTGAAGAAAACAGATATTAAGCTA ACCTGGCAAACTCTGAAGCTTTCACATCTCATAAAAACTGATTCTTGGTTTGGCAAATTTTCAGTTCGATTTGCTGCTTC AGCAACAGCTTTCCTTCACAAACTACAAAGAGGTATACCACCCTGGGTTCCTCTTAAGGGTTTTGAGGAGAAGACATATG AGCAGCTTCAAGAAGAGGCCATAGAAAGCAAGAGACGTGATTTAGCAGTATTGGAAGCTAATGATGGTGTTTGGCCTGGA GTTAGAATTCCAAGTCATGCGCTATTTCTTTGGGCTAGCGGCTCTGAACTGACCACTATTTTGGAACAGGATCACATGCC CAACAAATACATTCCCAAAGATATGAGGTATGTATATGCGGCGAATGACTGTATGTTGTAAATATAAAATTTCTGTTTTT TTTTTCCTTTCTTCCATTTTTACATTCAGAATTAGAGAATTTAACTAGGTTTATGTCAATAATAGCTGGAAATAGCATTG AACTGTGATTGTTATACTCAATCTATTATCGTTTAACTCTTGCCTTCCCTGCTGGCTGTGTGAGGTAGACGGAAGCTGGC TGACCTTATTCCAGGGTTGAGGCCGTGGGAAGTTCTGAGCATAGAACAAGCAATGGATCGAATAACATTTAATGGTGAAT GGTACCGTGAACCACTTGGGTCATTCAGCACCGGGCCACCATACATCAGGCACTGGAATAATGACGTTATGGTATGTGTT TTCATCAAAGCACTTGGATTCAAATATTGCATATTTGGAGGTTCTTTTCTCCGTTTCTTCTATAGGATGCAGTATTCTAG TTTATTACCTGCCTTACCAATTGCAACTTTTCTGTTTCATATCTTGGTAAAGGACAGATGTATGTTTGTATAAATATAAC TTTTCTTTCCCTTGTCATCATTACTAGGAAAGTTTTACTTTTTATCTACTGGCTTGCGGCCATAACGCCAGCTTCTTTCT CCTTAATCAAATATCTGAACAATAGGATGTTAGCTGTTAACATTAGGATGCATGCCATTCTCTAGAAATCCTTCCTTCCT CAACAAGACCTCAAACATGATGCATTACAGTTTCTTTATTGGTTTCCTTTTTATGTTAACTAATAGCGATTCTGATGATG CATTTATGCATGAGATTTTAGCAAATCCCCAGAACACACTGCTATACTTTCGAGTAGCTGTGCAGTGCTTATTTTTGTCG TAAATTGCTTTTCTGTCAAACACGAGGTTTTATTTGCTTTGATTATTTGCAGAGGACGTTTAAGCTATTTGAAGACCTAA ACAATGAGTTGTATGAAAAAATGGAGAAGACACTTCCTGGCTTTGACAAAATTGTGAACAAGATCCAGCATGATTTTTAT ACCAGAATTGAGAAACTTACGCAGAAGAAAAATGCAGAGAAAAGAGAGGCCCGCAAGAAAGCTGGGTTGCCCGAGTACGA ATGGCACGAAAAATCCCCTTATGAAAAATCCCCTTAGTGTCATTTCTTACATGATTTCTGCAGATCAGATGGTAAGACCT TATTGTGTTTGAGTAGTTGATTTTTATTTAATGTAATTACTTTGAATTGACCAATGTATCATCGTTGCCAAAAACAATTT ATTTACCCACTTACTGGCTAAAATGTTGAAAATTGAATTGTTGCAAGTTAAAGTTTCCACCAGTTATTTGAGGTGTGACT GACATAAGATGTTACTGCTATATAAACATGCTAATTTGGTATATTGACATGAGGGCATGCATTTGGCGAAGCGTGGTTGT ATTTCATAAGTTATGTGTACCTGGTTAGTTCTATTATAAAGTACATTACATTTTGCTTCATGTAAAAATATGAATCTTTT GTTTCAAGCTTGGTTTGTTTCTACAGTGTAAGAAACACTTCGAATCGGTCGAAGAGAGAAACATTTGCTCAGAAAAGAAG TGCATTAGCCTGCTTAAAATGAATGCTTGTGGCTGAAACAAAGGCCACTAGATGAACTTTTAACATCTTATCTTTAACAC AAGGGATTGAATGACGGTGTTGCAGAGTTTGTACCAGCTCTTGAATCGTTTTTAGTAGACTCTAATATTTCTCTCCTTCC GGCAATATGTGAGTAATTCATTAAGTACTATTTATTAGAACAACATGTTTGCTTTTTTACTGGCTATTTATAGCAGAGTT TTGGTATGATTTTCTTCAAGATTATAAAAATTTGGTCTTTGTACACGTTTGCAAGAGGCATATGAGTATTGAGTCTAAGG TGTGGCAACCGTGCGGGATGCCCTGTCCTTGGCTCCATCCCTTATCCCTATTAGGATTTAGGGGATATATTTTTACCTAT CCCCATCTCTCTTTAACTGTCATAAAAGATTACAGTTTTTTTTTTAAATATAATAAAAATATATGTTTAATTGCACTTTT AATAGCTGATGCTTATATCCCGGTACGTCATTGCTTCTTCTAAAAAAGAAGTTTATGACCCGTAGGCCTTCTACCTGCAC GCGGCATTGCTCCGTGAGGCTATCAGCTATTACGGAAAACTCCCCGTTGCTACTTCCTGTGTGATTGATCATCCTCCTCT ATTGTGATTGTGAGATGGTAGCATAATTATTACAACTATATACTTAGTATATATTTAGCATAATTAACATCTGATCAAAT GTGTTTTCTATTTTTTGTATTAATTAATCACTTTTCTTATTTCATACATTTTTTGTCATACAATTACAACCTTAATAAGT TACTACTATATATAATCTATTGTTTTATAAGCACTCTAAATAATGCTCTTATATTACATAATATTATAGCATTATATTTC TTGGAATTTTCTCTTGTCTTCTGGCTTTTGAAAAAAAAAACATCTCCAGCCCAAAAATAAGCAGTTGAGAAAACCTTCAC CAAAACATGTTCCTAAGCACATGCTGTCTATATTTTTTTTTTTAAATTTCGTTGACCTAAACGATTATGTTAGCATAGAA AGTGATTGGAACAGAATCCAAAGGCTCTGTTCAGTATTGATTACTCTTCTGATCCAATTCAATTGTGCCAAGCAAGCACT TTATTTTTCTTTGAATATTATGATTGTGAAGAATGTTAACTAGTAATTGATATAATTGCAATGCCAACACAAAGACACTG AAGATAAACCAACCAACCGCTTGACCAAGGGCCCCATTAGCACACTCTATGTTGCTACCATCAAATTGAGAATATTTGGT AACTGGGATAGCTAGGAAAAGCAAAATCCAAATCAATTCCCCCTACTTACTACAGTATTTATTTACTAACCGTGCATTGT ATTCATAATTTGAGCTTATCTTATACTTCCCATTACTCATATTTTAAGTCATTTTTACCTAAATGTTTAGACTAATATTG GAAGAGTTCATATGAATAGTTTATAATTTATTTATAAGTTGTTTTGAGTCTTTTTTTCTTCATAAAATGTTCAGATTAGC TTACTAATAATCACTTATATCTGCTTATAATTTGGGTGTTCATAAAATGCTCTAAATTCCAGCTCATAATTATGTGCTTG CCTAATAGCTATATAAGTGATAACTACAACATAACAAATATGGTCATTTTTATTCTATCATTCGATCAAACGGGTTTAAT TCATTTAGGATTAGTAAGATAAATTTAAATATTTTATGCAGTGTAGGAGGAGCCGATATTTGTTTCCGAACTTGAAAGGA TATAAATTAAAATAAGGAAGAACGAAGGCCATGTTTTTTTCTTTGTTGTTTTCTTCTATGGAAGGATTCACCTGTTGTTT TCCTCAACACTTTTTCAAAGGGCATGATGGATATAAAACATGGGGGGACTAGCTGCAAGGAAGAGAAGCAGGGCTCTCTT CTTTGAAAAATGGGGAAGTGGAAAGTCTGCTGCTACTTCAAGCACTTAGCTATCTGTCCAACCAAGAGCATCCTTAGCAA ACTCACTTCATACTTCAGGTTTAAACCCCAAGGTGAAGTAAACATTCTGCTTCATATTATTGTAAGTTAATTTGTGAAAT TTTTATGTTTAAAATATCACGATAGAGGATCAAGATCACCTGTATCCATATGGTGTTTCATTTTCTGTTTCACCAATGTG ATTACACCACGTCCATTAAAAATCACTCTTATAAAGTTACAAATGTCATATTCATATATATTTTAATTGACATAACATAA TTCATTAGTTAAGACAGAAAATGAGACATCATTTTGAGGCCGAGGATCTCGATCCCCTGAAAGATTGATTAGTTAAAAGA AGTGAATAATTGAAGTTGTTATATTTGTTCCTTATCTGGTTCCTGATCCTTTGTTTCTTTGTGATGGTGACTCCAGGGCA TAGAAATGGGCTTGTTAATCTTTATAAGGATATGGAGTCTTGTGGTGAATATGAAGATATACAAGTTATGTGGAAAATGA TTCAAATTCAGTCATCAACTCCTCAATATGCCTGCAACATGAAAAGGACCAATAGGTCTTCATATTGGATACTTTGTTTT CGGCCAACTTGAGAAGTAATTGAGACAAGAGTAGCTATGGAAGGAGAAGTAATTGAGATTTGCAATGCCAACTTCAATCA TGTTATAGCCTCATAATACATTGTCAATTTCCATTTCTTCTCCCTCTACTGCTTCCGTCTCATCAACACTTTTTTTCCTA AGAAGACAAAATGAATGACAATAAGAATCCAATTTTAGCCCCTAG
CDS sequence (LotjaGi3g1v0197500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCATCAACTTCAACCCATTCGGAGGGAACTGGAACTGGTTCTCAAAACCCTCAAACCCTCTTCCTCCTCTCAA CACCCTCCTCACCTTCTCCGACAACCACCACCACTCCCCCAACTTCGCCGCCATCAACCTCTTCCGTCGAAACCCCAAGA AAAAACCCGACAACGACAACGAACCCGGTCCCTACACCCGCATGGCGCACCAATTCTTCTGGGAATGCGAGAATCTCCCC GACCACCGGCACACTCCAGAGGTCGAGAAGATTCTCAACGACGACCCCGTTTTCGAGAAGAAGGAGAATCCTACAGAGGA GGAAATCAAGGAGAACATGGAGATGTTGGAGAAGATTAAGAGCAGCCCCGTGATGCAGTTTTTGGTTAGAGCGGAAGAGA TTGCGGATAAGATGAATGAGATGGAGCTGAAGGAGAATGAGAACCCGTATCATAAGGAGGATAGGGAGCTTTGGAAGGCG TTGCCGAATGTTATCGGGCTCGACGGGAGGCCGATGCCCCGGAAGGCGTTGAAGACTAGGCAGGAGGCTCATGATAAGTT TTGGGATTTTGCAAGGCAGTTCTTTTTTGGGCTTTGGGGGTTTAGGCAGAGGCCTTACCCTCCTTGTAAGCCTAATGATG CTGCTCAGGCTATTGGGTATAAGAACCTTGAGAAGCGGTACTATGATTTTATCATGAGGAGTGGTGGATTTTACTATAAG GATCGTCTGGGTCGAACACGAGGACCGTGTGAGTTGATTCAACTTAAAACTGCATGGGGTGCTGGGATTATTGATAAGAA TACTTTCATTTGGGGTGAGGATATGGATGAATGGGCACCCATTCACATGATTTACGGAATGGAGCGTGCAGTTGCTACCT GGGAAGTTCGATTTGCTGCTTCAGCAACAGCTTTCCTTCACAAACTACAAAGAGGTATACCACCCTGGGTTCCTCTTAAG GGTTTTGAGGAGAAGACATATGAGCAGCTTCAAGAAGAGGCCATAGAAAGCAAGAGACGTGATTTAGCAGTATTGGAAGC TAATGATGGTGTTTGGCCTGGAGTTAGAATTCCAAGTCATGCGCTATTTCTTTGGGCTAGCGGCTCTGAACTGACCACTA TTTTGGAACAGGATCACATGCCCAACAAATACATTCCCAAAGATATGAGACGGAAGCTGGCTGACCTTATTCCAGGGTTG AGGCCGTGGGAAGTTCTGAGCATAGAACAAGCAATGGATCGAATAACATTTAATGGTGAATGGTACCGTGAACCACTTGG GTCATTCAGCACCGGGCCACCATACATCAGGCACTGGAATAATGACGTTATGAGGACGTTTAAGCTATTTGAAGACCTAA ACAATGAGTTGTATGAAAAAATGGAGAAGACACTTCCTGGCTTTGACAAAATTGTGAACAAGATCCAGCATGATTTTTAT ACCAGAATTGAGAAACTTACGCAGAAGAAAAATGCAGAGAAAAGAGAGGCCCGCAAGAAAGCTGGGTTGCCCGAGTACGA ATGGCACGAAAAATCCCCTTATGAAAAATCCCCTTAG
Protein sequence (LotjaGi3g1v0197500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASINFNPFGGNWNWFSKPSNPLPPLNTLLTFSDNHHHSPNFAAINLFRRNPKKKPDNDNEPGPYTRMAHQFFWECENLP DHRHTPEVEKILNDDPVFEKKENPTEEEIKENMEMLEKIKSSPVMQFLVRAEEIADKMNEMELKENENPYHKEDRELWKA LPNVIGLDGRPMPRKALKTRQEAHDKFWDFARQFFFGLWGFRQRPYPPCKPNDAAQAIGYKNLEKRYYDFIMRSGGFYYK DRLGRTRGPCELIQLKTAWGAGIIDKNTFIWGEDMDEWAPIHMIYGMERAVATWEVRFAASATAFLHKLQRGIPPWVPLK GFEEKTYEQLQEEAIESKRRDLAVLEANDGVWPGVRIPSHALFLWASGSELTTILEQDHMPNKYIPKDMRRKLADLIPGL RPWEVLSIEQAMDRITFNGEWYREPLGSFSTGPPYIRHWNNDVMRTFKLFEDLNNELYEKMEKTLPGFDKIVNKIQHDFY TRIEKLTQKKNAEKREARKKAGLPEYEWHEKSPYEKSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 501 | 501 | 3.7E-270 | ||
| Pfam | 238 | 283 | 46 | 3.4E-9 | ||
| Coils | 328 | 348 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0197500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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