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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025640
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.095s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0315359.1
n.a. PREDICTED: HIV Tat-specific factor 1 homolog [Glycine max] gi|356535254|ref|XP_003536163.1| chr0 164630338 164633144 -
2 domain predictions
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Lj3g3v1378150.1
n.a. TRNA pseudouridine synthase B [Theobroma cacao] gi|508715204|gb|EOY07101.1| chr3 17559779 17564387 +
2 domain predictions
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Lj4g3v1788170.1
n.a. PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max] gi|356563087|ref|XP_003549797.1| chr4 25381691 25398241 +
2 domain predictions
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LotjaGi3g1v0197500.1
n.a. Protein TIC 56, chloroplastic; TAIR: AT5G01590.1 histone-lysine N-methyltransferase ATXR3-like protein; Swiss-Prot: sp|Q7Y1W1|TIC56_ARATH Protein TIC 56, chloroplastic; TrEMBL-Plants: tr|I3SGF1|I3SGF1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197500 LjG1.1_chr3 28894633 28902437 +
2 domain predictions
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LotjaGi3g1v0197500.2
n.a. Protein TIC 56, chloroplastic; TAIR: AT5G01590.1 histone-lysine N-methyltransferase ATXR3-like protein; Swiss-Prot: sp|Q7Y1W1|TIC56_ARATH Protein TIC 56, chloroplastic; TrEMBL-Plants: tr|I3SGF1|I3SGF1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197500 LjG1.1_chr3 28894776 28900390 +
2 domain predictions
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LotjaGi4g1v0264300.1
n.a. DnaJ-like protein; TAIR: AT2G26890.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2; TrEMBL-Plants: tr|I1K1B1|I1K1B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0264300 LjG1.1_chr4 62838622 62856655 +
2 domain predictions
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LotjaGi4g1v0264300.2
n.a. DnaJ-like protein; TAIR: AT2G26890.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2; TrEMBL-Plants: tr|I1K1B1|I1K1B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0264300 LjG1.1_chr4 62838966 62855974 +
2 domain predictions
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LotjaGi4g1v0264300.3
n.a. DnaJ-like protein; TAIR: AT2G26890.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2; TrEMBL-Plants: tr|A0A0B2Q0L8|A0A0B2Q0L8_GLYSO DnaJ like subfamily C member 13; Found in the gene: LotjaGi4g1v0264300 LjG1.1_chr4 62841772 62855974 +
2 domain predictions
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LotjaGi5g1v0202800.1
n.a. RNA binding protein, putative; TAIR: AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog; TrEMBL-Plants: tr|A0A0B2Q0D8|A0A0B2Q0D8_GLYSO HIV Tat-specific factor 1 like; Found in the gene: LotjaGi5g1v0202800 LjG1.1_chr5 50319442 50327257 -
2 domain predictions
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