Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0197700.1

Overview

Field Value
Gene ID LotjaGi3g1v0197700
Transcript ID LotjaGi3g1v0197700.1
Lotus japonicus genome version Gifu v1.2
Description DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT3G08890.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SL86|I3SL86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28960640..28965273) extracted from Lotus japonicus Gifu genome v1.2.

TTATTTTTCAACTCAAATTGATTCCTCTTAAAATCTCAGGGACATCAAACATATTAAGCCTAAATAAATCACGACTCTGA CAAAAACATTCCACCGAAGAAGCAGGCAAGGTGGTTCTCCATTTCACATTTCTTTCTCTTTCTCTCGGCGAAGAACAGAG TCAGAGAGGAAGAGCCTTTTGGATTCAGAACGAGATGGATCAGATATTCGGCAAGGTTGGATCCTATTGGTTTAACCAGA AAGCCTCCAAGGAGATCAATTCCGTCGGCGACGACATCAACGTACGTGCAATTTCACTTTCTCCTGCAAAATTTCACTTT TTATTTCTATTTTTATTTGTTGTGAATCAAACACGAGGTTACAGTTTCGGATCCACCAAGATCTGAAAAAAGAATGCAAG AAAATGAGTTTTTTTTTTTGGAAATTGGGACCAAGATGCTGCATTTGACCCAATTTTGGTTGGGTTGGGTATGAATTTTG GAAAATTGAAAGTGTGAGGTATTGGATTATGAATGTTGACCTTGTTTTGATATCAATTATCAAGTTTATATCTTTGACAG AAAGCAGGGAATTAGGTTAATTTCAGCATTTTAGGCATAAGTAGTAGAGTCATGAAGCAAAATGTTTTCTTGTGTTGTAA AATGTCAGTGAGAGTTTTCAATTGTAACTACTAATTTCTTGATGTCCATATTTGTTCTCATTGCATCTATCAACTCTTAG CTTTTGCATTTATTATAGAGTTTTTAATGCATATAGAAGTTATGATTTTGAATTGATGGAGGGAAAAAAGCCTACCTGTC TAAGTTTGATTCCCAAAATCTGAAGATTAATGAGGCCATCATGTTATGGTGAGGGAGGAGTGTAGTTATATGAGAAATGG GTCGCGTCGGGAAATTCAGAAAGTCTATGTTGAAGCCCTTGTGCAGCTGGTTGCGTTGTTGTGTGAGAGTTCATGTGTTT CAGTTGGAGAATTACTCTCTTGTAAATACAAGCTAAGACCACTACTTACAATAAGTTTTCAATTGGCCCAAGCCTTCCCT GAGCTCCGCCATGGTGGGAGCTTTACAGAATTGGGTGGCCCTTTTGTGTAATCTGAATGCTCGGTAGGGAAAATAACATT GGGAATGAGCAAGGGAGCTGGAGAAGCCATTTTACCGTAGTGTATAGGCAATATATTGCGTGATATATTACATTTCTTGA ATCAATTTTAGATGCATCAAGATGAACCCCATGAAAATTGAAATAATGTTGTTTCTTGGTTAACGTAAAGATAATTTACA AAATTTGCATTACAAATCCTTTGTGTATTTTAGTGTTTCTAACCATCAACTTATTTTTTTTTAACCCACTTATTTATGTT AATCTAGCTAAAATAATGTCACGTTATGGGTTGGAGTCTAATAATTATCTAATAATCTAAATAGATGTTTAAACTGAGTT TTGTTACTGTCAGGTGTATAAAAGCTCTTAATAAAAGAAAGTATGTTGGCTTGCTAATGACTTAACGGTTGCCTAGGCAG CTAACTCTTCCTGCTTAGGGTATCGAAAATGTCTTTGATACGATTAGTGGGAAAAAGGTGCGGTGATAAGATTTTCTGAT TGCTGATAAATTGGAAGCGATTAGATAGTTTAGCATAAGCCTTGGTACATACTTTTCTTACTGTTGGAGATAATGAACCT CTCATATGTCAAATTTTAAAAACAAACATTTCTACTAGACTACAAAATTTGGTAAAGATGAATTTTAATTGCTTGGGTAA TGTCCTTATTGACACCTTTTCTTTTGATGATCAGTCACTGTCAAACACTCTCGAAGAGGGAAGCAAATGGTTGGTCAACA AATTAAAAGGTTTGTATTTCCCTATTTCTATCTGTTGCTACAAGTCCAGGCTTTGAAACCCATGCAATATTTATGATTTC GTTTTCTTTAACCTTATAATCCAAAATAAAGAAATTGACAGAAGCTGTATAGGAACACACTCAGTTTATTATTATTTGGT GGATACTGATATTTGTTTGGTGGATTTATTATAGAAGATGAAGTCTTGAAACAGAAAATAGGTATAACGCCATGTACTGA GATACCCTGCAAATCCACTTTCTCCGTTGCCTCTCTATCTTCTCCCTTTCCCTTTTATGCCCATACAGATCGAACTTTCC CCTTTAAGACTCACTTGCAATCTATTACTATAAGTTTTCCCTCTCCCGGTGAGACCTGGATGTTTGTGCTCCATCTGATG TATACCTTAGCAATAGCAATAGCTGGTTTCCCAACATAATGGCATTAAACTTTATAATGGATCTGCAGGGTGAGTGGGCT GAAAAGAAGTTTGAGAATTTCTGAACTCTGAACCATGGATACACGACTGTTATTTTGGGAACGACAGTTTCTGCTGTGAA TGTTTATTTGGAATTAATTTTCCTGAAGCTACTTTCAAAATTATTTCAAGAACAAGGAATTTAAAATGTACGAACAGGAA AAGATGGAAAACCGTCAATGCTTCTGTTTACTTCTCTTCTTCCTGAAATGCCTATCATCCAAATAGATTCCTCAAGCCAT AAGTATGAATGTTGTTGAGATTATACTTGAAATAACAGTTGTGGTTGCTTTTGAAGTATGCTAAATGCTTCTTCATCACA TGATTTCAAATCGCATTTCTCTAGATGACATATTATTTGTAGAACATTAGTGGATATATTTCTATTTTGAAGGAAACTTG AAGTTATCAATTATTAATTATTCTGGCATCTATTATAGTCTTTGTAGCTGTGGACTCTTGATTTGAAATTTACGCGCCAT AAAAACAAAATTGAAATGTAATTGTAGTTCAATATAACTTTTTATGGAATCATTATTAGTTGGAAATTTGTTTGCCTGTC TCTTCTACAGAAACTAACATTATTTGAAGTGGCAATAATTTTCTCACCTCTAATACTTATACTGCACTCTGCAGCAGAGC ATACTGGCATTGTAACATTAACTTTATAATGTATGTCCCAGTCATCTTGTCCAATGAAGTGGAATCTGAGAATTAGAAAT TTGAAACCAATATTGTCATTTTGTGCGTAAAACGACAATGTCATTTGATCTATCTAACCCACCCGGTAATAGACTTTGGT TATTACACTGCTGTCAAGTATTAGTGTGCAGTTACTTATTTATTGGCTTTCGAATCCCACTTGCATGAATTTCGAAAACA TGCTAAATAAAGATAATTCATGCACCCTTAGCTTTCTCATGTTATTTATTTGTCTCATACTTGTGATTAAGCAAATCAAA TGAGGTAAAATAAATGTTATCCCTCAATTTCATGTTTATGTTTTGATCACTTAACAGGAAAGATGCAAAAGCCATTAACG GAGCTGCTAAAGGAGTATGATCTACCAATCGGAATCTTTCCTCGTGACGCAACAAACTATGAATTTAACCCAGAGACAGG AAAGCTTGTTGTTTACATTCCTCAAGTCTGTGAAGTAGGCTACAAGGATTCATCAGTTTTACGCTTCTTCACCACCGTGA CTGGTTATCTGGAGAAAGGAAAGCTAGCAGACATAGAGGGAATGAAGACAAAAGTGTTGATCTGGGTAAAAGTGACAACC ATTTCCTCGGAGGGATCGAAGCTCTATGTGACTGCTGGCATGAAGAAAACAAGGAGTAGGGAAGCATATGAAGTTACAAG AGATGGTATATGTATAGATAAGTTCTAAAGCCTTAACATCATTTTGTCTATAGTTTGGCAATATGTAAAAACCTGTATGT TCTTGTGGACCATTTTGATCTTCTTTTCCTTGGTTGGTTATTGTAAGTAGTGGTAAAATATGTATCTCAGATACTGCCTT GCAATTCCAATGTTGTGATTTGCTGAAAGTGAAATCTATTCGGTACTTGTTCATGGCGCTTGTTAGGGGTGTTCCCATAG CAAATGGTACTCTATAATCTATGTATAGTACTTTATTTTTTAAAGAAATGAAAATGATGTTACACACAATACTACTATTT TTTTGTCATGATGATACACTAATCTAGTTATGGTAGTACACGGCACACAAAGCCCATGTTTTTTATTAGGTTTAATAATC AGAGTTTCCAATACAATCCGAGAAAACATTAAGAACAAAGCATGCTTACTCACTTATGTTGATATAAGTAACTACCATAC TAGAAAACTACTGCTTATTAAAAAAAAACCATACTAGAAAACAAACAAAGCCCCTAAATCTAAATTCCTACCAACACTGA ATGAGGCGAGCAATTTTGTTTTTCTTTCCAATTTAACCAACAACTCCAACTTCTGCAATCTAAAAAAGCCTTCAAGGAAG CCTACATTGTGGCTATGAAGCCACAATACTAAAATTAAGGAAAATAAACAACTTCAGAACCAACTTTACCCATCAACAGT AGAGAATATAAAAGGAAGAGGAGGGTGGTGGTGGTAGTGGTGGGAATGGTCATAGACGAGTGCGAATGCAGCGGCAGCGG CAACACGATAATGAAGGTGGTTGTGTCATGGCGACGGTGCACGAAGTCATCGATAGAGGCAACAAGAGATGGAGGTATTG AAAACATCCTTGAAGGAGTGGAACTTCACTTCAATCTTTGTAGAGAAAGCCATTGTATGTGTATGACTGTATGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0197700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCAGATATTCGGCAAGGTTGGATCCTATTGGTTTAACCAGAAAGCCTCCAAGGAGATCAATTCCGTCGGCGACGA CATCAACTCACTGTCAAACACTCTCGAAGAGGGAAGCAAATGGTTGGTCAACAAATTAAAAGGAAAGATGCAAAAGCCAT TAACGGAGCTGCTAAAGGAGTATGATCTACCAATCGGAATCTTTCCTCGTGACGCAACAAACTATGAATTTAACCCAGAG ACAGGAAAGCTTGTTGTTTACATTCCTCAAGTCTGTGAAGTAGGCTACAAGGATTCATCAGTTTTACGCTTCTTCACCAC CGTGACTGGTTATCTGGAGAAAGGAAAGCTAGCAGACATAGAGGGAATGAAGACAAAAGTGTTGATCTGGGTAAAAGTGA CAACCATTTCCTCGGAGGGATCGAAGCTCTATGTGACTGCTGGCATGAAGAAAACAAGGAGTAGGGAAGCATATGAAGTT ACAAGAGATGGTATATGTATAGATAAGTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0197700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDQIFGKVGSYWFNQKASKEINSVGDDINSLSNTLEEGSKWLVNKLKGKMQKPLTELLKEYDLPIGIFPRDATNYEFNPE TGKLVVYIPQVCEVGYKDSSVLRFFTTVTGYLEKGKLADIEGMKTKVLIWVKVTTISSEGSKLYVTAGMKKTRSREAYEV TRDGICIDKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31676:SF102
1 170 170 1.2E-88 –
PANTHER
PTHR31676
1 170 170 1.2E-88
IPR007493
SUPERFAMILY
SSF141562
2 169 168 8.37E-51
IPR036758
Gene3D
G3DSA:2.30.240.10
32 170 139 2.4E-57
IPR036758
Pfam
PF04398
55 159 105 5.9E-28
IPR007493

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0197700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…