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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0199600 |
| Transcript ID | LotjaGi3g1v0199600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BRCA1-A complex subunit Abraxas; TAIR: AT3G08780.1 BRISC complex subunit Abro1-like protein; Swiss-Prot: sp|Q6P4W0|F175B_XENTR BRISC complex subunit Abro1; TrEMBL-Plants: tr|I1J7I2|I1J7I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0199600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29124311..29130334) extracted from Lotus japonicus Gifu genome v1.2.
TCTATCCCTCTCTTTCTTTCCTTTCTCACTAGTTTATCACACCAAAATGGTCTTACACCAAACATAATGGGTGAAAAATT TCTCAAAATTTACCTAAAGTGTAAATGTAACCAGTTAAAAACAACACGATCCCTGAAAAAGTTAAGGGTTGTACTTGTTG CAGTGTAAAGCAAAACACTTCACACAACACAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCC ATGGACGATCCACCGTTGCAGAACATCGCAATTTCCGGGCCCACACTAGCCTCCCTCATCCAACGCTTCTCCACCGCGCC CTCCGCCATCGACGGCCTCCTCTTCGGCCACGTCACCCACGTCACCCCTCTCAACCTCTCCGACGACTCCGACACCGACT CCTCCACCCTCCTCGCCACCGTCACCGGCTTCCTCTCCTCCCCCTCCTTCCATGACTCCACCGGCGCCGTCAACCCCTCC TCCCTCCTCCGCCTAATCCCCCCCTCCTCCTCCCTCATAGGCTGGTTCTCCGCCCGCCGTAGAACCCCTCTCCGCCCCTC CATGCGCGAATTCTCCATCACCTCCTCGCTTTCCTCCCTCTCCCAATTCTCATCCCCCATCGAAAACTCCCCCCACCATC GCTTCAACCCTTCCCTCTTCCTCCTCCTCGCTTCTCCCCCTTCTGACCCAACCTCCTCCCATGTCCACACCCATGAGTAC CGCGCCTACCAGTTCCGCCGCGCCGCCCTCTCTTTCGACGCCAAATCCATCAACATTGTTAACATTGGACCGGCTTTTCG CGGCCATTACGGCTCATTCAGCCCTAACTCTCCGTTACCGGCCCTGAATTGCCGCCTCCGGGGCTCGCCGATGAAGGGCG ACGACGGCGACGAGCGGCTCAGCGAGATGAAGCAGGCTGCAAAGGATCAGAGGGAGCTTGATGCCTGTGTGGAGGGGTTT GAGGTTGGGAGGTTAAGCAGTTTGATGGGTTCAGAGGCCACTAGTTATACTCAGGGCTTGGAGGATTTGTACCAGAAAAT GCTTGTCAAGATTGAGACCTTGACTAGCTTGGTGGAGAAGAGTTCTGCTAAGGTTCTTGAGCAGGTTAGCTTTTATTTAT TTATGATTGTTGTTGTTGTTGTTAATGCTGAACATTTATATAAGCTGTGATGATCTTCATTAGAATGTAGTGGTTCAAAT GTAGGGATGGTTATTGGATAGAAGTAAATTGAAGAACTATTGGTTTTATTTAGAAATAATGTTATCAAATTGGTAGTTTT ACTTTTTTGATGATTGATTTTTTCTTGTAGTATGGAGCGAAGTAAAGTTAAGTTGTGAGTGGTTTTAGAGTTTGGATTTA TGGTCTCTGCAACGCAGCGTCGGTCATCTTAATGGTAGTCAAAATCCTGATTTAATCCCTTAATCTTAGGATTATGCGAT TAAAATTCACCTCAGTGATAAAAAAATCTATTGCATAATCCTTTTCTGGCTAAATCTGACCTTACATGCGATTAAGCTCG GCTCATGTAACGCGGGTTTGATCGCTTCCTAATCTTGATCCGTTTCGCGAAACCCCTAATTTGTTTAGCAGCCGAGAGAC CCCTTCTCATCTCCCCCACTGCACTGTCGATGTTGCTCCTCCACCATTGATGAGAGGCTGGGACTTGGGTTGGTAAGCCA AGTGGTGGTGCTGTGAATGAGGCTGGTTTAGTATGTCATTCCTATTAATTACGTTTTATGGCTTACGTGTTTTGAGTACA ACTTTATTTGAGTGTTTTTAGTTATTTAAAATGTTCTATTTGTTATTTATGTAATTTTATATGCGTATGTCCACATATAG GAATTTTGCTTAATCTTACGATTAACATCCACCTCCCTGATTAAAGGCATAATCCCCGATTTTGACTACTTTGCTCATCT TATGAATTGTTAGTGATTCTAGATTAGGGATTAGTTTAGTTGCTGTACCATCCCGGAATAATGGGTACAAGTTTTTACAA GCTGACTCTCATTTTTGGGAATGGGTATAAATCCTTAGCGTCTAGGAAATTCTGAAGTTAACAAGTATAAGTCTCCAATG ACCAGACTATTCGTGGGAAAACATATATAAATCCCTAAAGATGGTGCCACTTCAAGGACAACTGGTATATATCCCTCAAT AAGCACAAGTTTTAAATCCCTGTAGACTGTATTTCCTGGGATGACTGGTTACAAGTTAAGTTCCTTAAAGGCCTAATGTA AATTTGTCATACCTTATTACCTATCTCTGAAGACCGGTAGTATGAGCTCAAGTCAAAATAGCTAATGCTGCTATTGACGC GGGTTCAGCCTGCAAGAGTTCATAATAAAATCATAACTGGAAAGCAAGGTAAAAAATTTAATGGGACAGTGACACAAAAG GTGATTAACTTCTCTAATATTGTTTAGGAGATTTTTGGAGGGAAGAAGAGGGGATGGCTTTTTTTTTTTAATAATGAGAA TTATATAACATTTATGATAATAAATAAATAATTAGTACACTATGTTTATGCTAATTTATCATTTCATCACCCTTTATTTT AAAAAAGTTATCAAATTATAAACTATTTATTTAAAATAAAAAATATGCCTTCCCCTTAACCTCCTCTCAAATAACCTTTA TAGAACTCCAGATAACTAGGCATAAACTCAAACATGATGCTCTCTGAAACTTGAAAAGACAAGTTTAGGGTGACGAGAAA TTCAATGCTCTCTTAAACCCAATATGACATGCTTGGGGCTTTATACTGTATGAGGTCCTTTAGTAGAACTTCATCAGGAG ACCTGAGGGTTGTGGACAGTCCGGGGCTAGACTAAGAAGGATGTGGTAAAATTTACAACCCACACTCCTGGCCCATAGTC ATGGGTGCAAAGCTAATTGCCAGTTTCCCCTTTAATGAAAAAATGACCCGAAATGTAAATGGTCGACTAGAGCAGGCATA TCGTACTTTAGGTAGAATGAGGTCAGTGTAATCATCTGAGCTTTAGCTCGGAGTAAGACTTTGTTGAGACGTGGCTTCTT TAATTATATTGATAATTAGTGATTTAGAATTTATATGGGCCTCAGAAAATTATTGAATGTTATGCAGTAAATAACTGGAG TTTGATTTTTCTATTATCAACTTTGAGCAGGAAAATCTTAACAGGAAGTTGAAACACAAAATCTTGAGATCTACTGCCTC AGAATAACTATCTTAAATGCTGGTGATCCCTTCTGTTCTTTCAGTTTAAGGTAAGTTTTGTTTTGTAATCTTGTATTTTA GTTTCAATTTTTATTTTTAAGCAATCTTGAATAAATAAGTAATTCATCCACCAAAGAAATACAGAGAACATCAGCTATGT TGGTCTATCTCTCTGTTGAGTCTATTCATACCCGTTTGGTTGTAGATTGTTAGCAGCTCTGTATGGTAGTAGTTCTTATT TTTTAAGTTCTCCACTTTGCACAGAAAAACTGGAGTAATCAAATTGAAATGTGGTTCCCATTCTTTAATATTAGACCTTT CTGCTAGTTCTCTTCTTGAACCAATTTTTCTTCAACGTCTTCTGTACTACAACTTTGAGAAATTTATTTGTTTTTGTGGA CTTCATTTTTTAAAGTAATTTGAGTTCCAGGCCAGATTAGTATCTATTAAACTATTTGGATTAAGGGCTGACTAATCCCC CTAATGTCCATGACACTGATTAAATCGTAAGATTTTGTCTATGGATTATGGACTGACTAATCCCACCAATGTTGGGCATC GGTTATGACACTGGTGAACTTATAGGATTTAGTCTTTAAGGTATGGAAAAAGGAACAGAAAATAAAATAAAATTGTATTG ATATGATATATTGGATTTGATCTTACAAAAGACAAAACACTTGGGAGGGGCCATTGTAACACTGTAACTAATTGAACAAT AGTAATTTAACCAACAGTTCCGTGTAGTGAATTGGTTAGTCATTGGGAGGGGGAGCCCTGGAATTCCCTAGGGTTTAGTG GGTTCTTTTTGTATTTCTCATCTCTTTTTTACATTGGCATAGGATTAGAGATTAGAGTTCAGTAATAATATCATTCTGTA CTAAGCCATATGTACCAGTTCTTATGGTCAAGGCAGTATGTAAGTTGTTAACCTTGTGCAGAATTCTAGTTCAATACTAA TCATAGTGCTACCAGTAAAATGTCCCTTTTTAGGACTCTTTGTGGGTAAGATCCTCCCTGCTACAGTGCTACTCAAGGGT ACCACTATCCCCTCGAAAAGATTGAAGAAGTGAATCTGTTAACTAAGCAAAGGGATGAGAGGCTAGCTGATTTAAGGACA AACTTACTCAAGGCTAAGGATATGATGCGGGTTGAGAAGTCATTTTTGCAGCAGGAAATACTTCAAGTTGCAGCCTGATA GAAGGAAATCCTTGGCAAGAGAGATGAATGTTCGAAAAGCTGAATTAAAATCGCATAAAAAATAAGCTACTACAAACAGT AGCTTTCGAAGATTACACAATTTCTTTTGTGAAAAACTCAAAACCAAACTGTGAGAAACTCTGTACTAGACTCTATGGTT CCCCTACAAGGGTTATGGACAGAATCGGCAAATTAGCATATAAGCCGGAGTTTCCTTCTCAAACCGTTTATGGGATCGCC CATCAATGGCCCACCTGCAAATGTGTGGGCAGGAGGGGGGTGTTAAGGTCCCACATTAACTAGAGCAAAAATAATCCTTT AAATTCTCAATCCTGAGCTAGCTTTTGGATAAATCACAGCTCGTGCCTGCAAATAAATCTACTCATATGATATGTCATAT CACTTACGTCCAGTAGCTCCATGAAACTCACTGTCATGTTTATTATGTAAACAAATGTATGCATGCATTGCATTATTTTT GGGGGCATGGTCAATCATAGATGTTAACAAGCTTATGTTTTGCGTGGCACAAAACAGAGATGAGCAATGGACAATTTTCA GTCTTCCGTGCCTGACCTGGATCATCAAAAACAAGAATATTTCTGTTTGGACTTCTGGGATGAGCCTGTGGTATATGCAG TCCAGCAATTGTAGATGTTGTATTTTACTTTTTGGTGGCTCTTCAAGCTGTGAAGCAGGTAGTGATTGTGCAGGGTGGTT GAATGATTTGGTCCTCCATGTAAGAAAGCTCTTGATGTTTTCTCTCCCTACCCTGTGGTGGCATTGGTTTCATTAATGAT ATGCCAACTGTATTCTGTATGTGTTGAGCGTTGCTTTTTTTTAATCCCTTTATTGATTTCTATAATTAGCTTTACATGTT AAGCTGCTTTGTTGTTTTTGCAAGCTCAGTTACAAGAGGGAAGTAAAATCAACATGCTTTGTGGATTATTGTTTTTTTTT TGAAGGTGTGGATTATTGTTAAAACAAATGCAAATTTATCACTTTACTCCAATTGTCAGATATTTGTGGTACGCCTAGGG CCTTCACCCTCGCTGTAAAGTGTAAACTGTGAACTTATAGCTAAATTTACACCTACCTTATTTTCAGAAAATGGACCCTA TTTAGTGTGTTAAATTTCTAGCCCCCATCACCCAATTTTCCACCATACCCAAACATAATAAACTTCAAAATACTCTTGCA AAATAAACCCATTTACCTTTCCCTCTTTCCCCTTCACTCTCTCACACTCTTCCACCTATGGTGCTGTGTTTTGTTGGGAT ATATCTATGTTTTTACATTCCGGGTTATGAATCTCAAAACATTAAAAACACTTCTCGGGTTTTCTAGTTCCCATAAGTGT TGAGATTTGTGTTCCGAGAATTGGAAAACTCGGAATTCATTTACATTTATACTTTCAAATTCCCGGTTCTATATCTTGGA ATGTTAAAATCACTTCCCATGTTCAATTTTCCTGAATTACTGTGATTTGTGTTTCGGAATTTGAAAATCTCGAAACCTAT TTCATAAACTTACAATTACATTTATATTTTTATATTTCGGTTTCTAAATGTCGGAATGTTAAAAACAATTTTCCGGTTCT AAATCCTGTAATGTTTAAATATTG
CDS sequence (LotjaGi3g1v0199600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATCCACCGTTGCAGAACATCGCAATTTCCGGGCCCACACTAGCCTCCCTCATCCAACGCTTCTCCACCGCGCC CTCCGCCATCGACGGCCTCCTCTTCGGCCACGTCACCCACGTCACCCCTCTCAACCTCTCCGACGACTCCGACACCGACT CCTCCACCCTCCTCGCCACCGTCACCGGCTTCCTCTCCTCCCCCTCCTTCCATGACTCCACCGGCGCCGTCAACCCCTCC TCCCTCCTCCGCCTAATCCCCCCCTCCTCCTCCCTCATAGGCTGGTTCTCCGCCCGCCGTAGAACCCCTCTCCGCCCCTC CATGCGCGAATTCTCCATCACCTCCTCGCTTTCCTCCCTCTCCCAATTCTCATCCCCCATCGAAAACTCCCCCCACCATC GCTTCAACCCTTCCCTCTTCCTCCTCCTCGCTTCTCCCCCTTCTGACCCAACCTCCTCCCATGTCCACACCCATGAGTAC CGCGCCTACCAGTTCCGCCGCGCCGCCCTCTCTTTCGACGCCAAATCCATCAACATTGTTAACATTGGACCGGCTTTTCG CGGCCATTACGGCTCATTCAGCCCTAACTCTCCGTTACCGGCCCTGAATTGCCGCCTCCGGGGCTCGCCGATGAAGGGCG ACGACGGCGACGAGCGGCTCAGCGAGATGAAGCAGGCTGCAAAGGATCAGAGGGAGCTTGATGCCTGTGTGGAGGGGTTT GAGGTTGGGAGGTTAAGCAGTTTGATGGGTTCAGAGGCCACTAGTTATACTCAGGGCTTGGAGGATTTGTACCAGAAAAT GCTTGTCAAGATTGAGACCTTGACTAGCTTGGTGGAGAAGAGTTCTGCTAAGGTTCTTGAGCAGGAAAATCTTAACAGGA AGTTGAAACACAAAATCTTGAGATCTACTGCCTCAGAATAA
Protein sequence (LotjaGi3g1v0199600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDPPLQNIAISGPTLASLIQRFSTAPSAIDGLLFGHVTHVTPLNLSDDSDTDSSTLLATVTGFLSSPSFHDSTGAVNPS SLLRLIPPSSSLIGWFSARRRTPLRPSMREFSITSSLSSLSQFSSPIENSPHHRFNPSLFLLLASPPSDPTSSHVHTHEY RAYQFRRAALSFDAKSINIVNIGPAFRGHYGSFSPNSPLPALNCRLRGSPMKGDDGDERLSEMKQAAKDQRELDACVEGF EVGRLSSLMGSEATSYTQGLEDLYQKMLVKIETLTSLVEKSSAKVLEQENLNRKLKHKILRSTASE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PRINTS | 1 | 22 | 22 | 2.7E-47 | ||
| PANTHER | 5 | 303 | 299 | 1.2E-99 | – | |
| PANTHER | 5 | 303 | 299 | 1.2E-99 | ||
| PRINTS | 11 | 29 | 19 | 2.5E-15 | ||
| PRINTS | 31 | 48 | 18 | 2.5E-15 | ||
| PRINTS | 94 | 110 | 17 | 2.5E-15 | ||
| PRINTS | 147 | 167 | 21 | 2.7E-47 | ||
| PRINTS | 176 | 190 | 15 | 2.5E-15 | ||
| PRINTS | 184 | 204 | 21 | 2.7E-47 | ||
| PRINTS | 212 | 232 | 21 | 2.7E-47 | ||
| PRINTS | 238 | 258 | 21 | 2.7E-47 | ||
| PRINTS | 261 | 287 | 27 | 2.7E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0199600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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