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LotjaGi3g1v0201300.1

Overview

Field Value
Gene ID LotjaGi3g1v0201300
Transcript ID LotjaGi3g1v0201300.1
Lotus japonicus genome version Gifu v1.2
Description Phosphatase 2C family protein; TAIR: AT1G16220.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9SA22|P2C06_ARATH Probable protein phosphatase 2C 6; TrEMBL-Plants: tr|A0A0B2SJ37|A0A0B2SJ37_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0201300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:29352544..29355676) extracted from Lotus japonicus Gifu genome v1.2.

GTTACAACTAAGCACATTCAAACTAGCAACAATAAAAGACAAAATATGACCAAAAAAATGGTTTATCCAAATTCAAGGTT TCATACTTTCATCATCCATTCTTTTGTTTCTTCCCTTAGAAAAAACACAACTTTGTTCCTTGTCACTTTCCTTTAAATTC CTTGCATTCATTTTTCTTGCAAGTTTCTCACAACATTCAACTTCATCTGAATCAATCTTTCTGACCCTCTTTTTGTCCTT ACAAAAAGTTCCAATTTTTAATTCACTTTGTTGCTTGTTTTCTCCAGGAATTCTCTGGGTATCTCATTGAATTTCGTGGG GTCCTGTCTATACTGTGGAAACTGTTGTTAGAAACGTAAGACATGGGAGGCTGTTGTAGCTGCCATGTCTCAATTTTAGG CAAGGTACATGATGAGGAATATGAATGTAGCCATCACAATGTTGCTTCATTTGAACGAGGTGGGTCCCAGGTCATGTTAA ACGGGTCCTCTAAGTTTGCATCAATGTACACCCAAAAGGGTACAAAAGGGGTTAATCAAGATGCAATGACAGTTTGGGAG GTAAGATTAATCTTCATGAATCTGTTTGCATCATGGGAGAGCTCAATGTTTTTAGCATTATCATTAACCTCTAACTGTTT GATTAAATTTCTCTTAGAGGTTGACTCTATGCTGTGGTTTTTATTATAGCATATGAGCATATGACCAATTGATGAAATAT ATGGCTTGGACTAATGCTGGGTAATGGGTATGATACATGATCAGGGTTTTGCTGGAGATAAAGACATGATCTTTTGCGGC GTGTTCGATGGCCATGGTCCTCAAGGACACAGGTTTTCACAATGCATACGCGACAATCTACCCTCCAAACTCTCTGCAGC TATCAAACTGCCACAACAAAATGCTGCAGACACAGGCAGTTATGATGAGGATAACCGGCACATGTCTTTTGCTTCATGGG AGGGAAAATTTCTGAGGTCCTTCAAGGAAATGGATGAAGACCTTGCTAGGAACATTGACCGCGATGGCTATTGCGGAGGT AGCACTGCTGTAACTGTAATTAAACAGGTATCATATAACTGTGCTTTTTATTTTGAAAGGCATCATATAACTGTGTGTTT GGATACCAGTTGAGTTAATGTGAAAATACTTTCATATCAATCCTTAAGAAGAGTCATACCCACTTTTTGTCTCAAAGTGA GTGCTAACGTCCGTCTGATAGCACTAACTGCAACGCGTATCCAAAGATAGATATGTCATTCATAATTGTATTACCTCCTT GTCAAGGTTAAATGGTTTGTAAGATAGTACTATAATTGCATTCCTTTACCCTCTATAATTTCAGGGAGATAATCTGATAG TCGGCAATTTAGGTGACTCTCGCGCAGTTCTTTGCACAAGAGCGGATGACAACCATCTTATTCCGGTTCAACTTACTGTT GACTTGATCCCAGATATTCCAAGTAGGTCTTACTATTAAGTATTAACTATATTGATCTCAAATCTCAATTACCAAATCTT ACAAGCCTGTGTAGTTTATGTCTAACTCGATTTTTTCTCTTCAATGTCACTCAGGTGAAACTGTAAGAATACTTGATTGT GGAGGCAGAATATTTGCTACAGGAGAAGATCCAGGTTTAAACAGAATATGGATGCCTGAAGGTGATTGCCCTGGACTGGC TATGTCTAGAGCCTTTGGAGATTTTTGCCTGAAAGACTATGGCCTCTCCTCAGCTCCAGATGTGTCTTACAGAAAACTTA GCAAGAGGGATGAATTTGTGGTTTTGGCTTCTGATGGGGTAAATATTTACAGATTAAACATTGTTAGCTAGTTTTTAAAT TAGTAGAAAACTTACCTACAGTACTAAAGGTGTTGTTTATGCTGATGTCCAATGAAAAAACTTCCCTTTTTTCATCTCAC GCGTCATGTTGTAATTGGATTACATTAAAAACATGTAAAGAACTGTATCTAAGATTTGTCCTTTAAGTTACTGCTCAATT CTTTGATTTCTCTCTAACCACATGACATATGCATTCACATATTGGAAGAAATGAAATATTCAGGCTTTAGGGGACATTGA TTTCATAGTAGTTTCAACATGAAATGGCTTCAAGCAGGAATTACCTTCTACATGCAAATATTAAAAGGTGTAATTTTGTT TTTCCTACAGATATGGCATGTTCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCACCAACGAGGTCCATGGCAG CCAAATTGTTAGTACACCATGCCGTTCAGGCTTGGAGATATAAGTATCCTGGTTTCCATGTTGACGATTGTGCAGCAATA TGCTTGTTCCTGAATGATCAGCATGTTTTAACCTCTTCCCAGTCCAGTGTGAGAGGATCTTGGAAGAAATTGCATTGAAC TTGATTTAGAAATGTAAACACAACTTCTAGATGGCAAGAGAGAATGGTAGAGTGAAAGGAAAATTAGGAAGCTCTTGGAG GGTTATCATTTATCAAGGATCCAACTCACTCTGAAATCTGAATCTCAAATTTCATGGCTTGCTAGAGTTGTGAGTTGATA TAGAATCATCTCAGCACCTCAAGGGGGTTGAAGTTCACTAACTCAGCCAGGACCAGAACTCTCCTCAAATCCCACTACTA TAATTTCAGTAGAGCAAGGCCTTCTGTGTCAGCTATGAGGTGTTCAAGATTTTTGTTTTGACATACACCAAGAAATTGTA GACAAAAACAATTCATATCCTAAAAGATGTTCTGGTTGTCACTTCTCAGAACACACTGAGACACCTAAACCTGAAAGAGG GGAAAACAAAGAGAAAAGGAACACTGTGTAATGGTTATTAACCAATCCTTCATACCATTTTGATTGTCATCAATGATAAG ACTTATGTCTTACCACTAGATTTATGTGTTATAATGTTTGTTTTAAAGTTAGACTTGTAATGTACAATAAAAGATGCAAG TCTTTCGACTTTGAAATTTTGGGATATTTCCATATCTGAGGTTTTTATTGTATCTGCTTAAAACAGGCTTTTGATACCCA CTAAAAGCATAGAGCAACTGACACAAAGTTGTTCTAGCTTGGGCAGAGGTCTAAGGTTTGACCTTATATGAATGCAGCTG CGGTAAATATTTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0201300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGGCTGTTGTAGCTGCCATGTCTCAATTTTAGGCAAGGTACATGATGAGGAATATGAATGTAGCCATCACAATGT TGCTTCATTTGAACGAGGTGGGTCCCAGGTCATGTTAAACGGGTCCTCTAAGTTTGCATCAATGTACACCCAAAAGGGTA CAAAAGGGGTTAATCAAGATGCAATGACAGTTTGGGAGGGTTTTGCTGGAGATAAAGACATGATCTTTTGCGGCGTGTTC GATGGCCATGGTCCTCAAGGACACAGGTTTTCACAATGCATACGCGACAATCTACCCTCCAAACTCTCTGCAGCTATCAA ACTGCCACAACAAAATGCTGCAGACACAGGCAGTTATGATGAGGATAACCGGCACATGTCTTTTGCTTCATGGGAGGGAA AATTTCTGAGGTCCTTCAAGGAAATGGATGAAGACCTTGCTAGGAACATTGACCGCGATGGCTATTGCGGAGGTAGCACT GCTGTAACTGTAATTAAACAGGGAGATAATCTGATAGTCGGCAATTTAGGTGACTCTCGCGCAGTTCTTTGCACAAGAGC GGATGACAACCATCTTATTCCGGTTCAACTTACTGTTGACTTGATCCCAGATATTCCAAGTGAAACTGTAAGAATACTTG ATTGTGGAGGCAGAATATTTGCTACAGGAGAAGATCCAGGTTTAAACAGAATATGGATGCCTGAAGGTGATTGCCCTGGA CTGGCTATGTCTAGAGCCTTTGGAGATTTTTGCCTGAAAGACTATGGCCTCTCCTCAGCTCCAGATGTGTCTTACAGAAA ACTTAGCAAGAGGGATGAATTTGTGGTTTTGGCTTCTGATGGGATATGGCATGTTCTGACAAACAATGAAGTAATAAACA TAGTTGCTTCAGCACCAACGAGGTCCATGGCAGCCAAATTGTTAGTACACCATGCCGTTCAGGCTTGGAGATATAAGTAT CCTGGTTTCCATGTTGACGATTGTGCAGCAATATGCTTGTTCCTGAATGATCAGCATGTTTTAACCTCTTCCCAGTCCAG TGTGAGAGGATCTTGGAAGAAATTGCATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0201300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGCCSCHVSILGKVHDEEYECSHHNVASFERGGSQVMLNGSSKFASMYTQKGTKGVNQDAMTVWEGFAGDKDMIFCGVF DGHGPQGHRFSQCIRDNLPSKLSAAIKLPQQNAADTGSYDEDNRHMSFASWEGKFLRSFKEMDEDLARNIDRDGYCGGST AVTVIKQGDNLIVGNLGDSRAVLCTRADDNHLIPVQLTVDLIPDIPSETVRILDCGGRIFATGEDPGLNRIWMPEGDCPG LAMSRAFGDFCLKDYGLSSAPDVSYRKLSKRDEFVVLASDGIWHVLTNNEVINIVASAPTRSMAAKLLVHHAVQAWRYKY PGFHVDDCAAICLFLNDQHVLTSSQSSVRGSWKKLH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF611
13 349 337 1.9E-145 –
PANTHER
PTHR13832
13 349 337 1.9E-145
IPR015655
SMART
SM00332
36 333 298 2.6E-58
IPR001932
Gene3D
G3DSA:3.60.40.10
36 338 303 4.0E-73
IPR036457
SUPERFAMILY
SSF81606
43 337 295 9.16E-58
IPR036457
CDD
cd00143
45 335 291 1.85544E-64
IPR001932
ProSiteProfiles
PS51746
45 335 291 44.253
IPR001932
Pfam
PF00481
69 313 245 5.3E-38
IPR001932

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0201300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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