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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201800 |
| Transcript ID | LotjaGi3g1v0201800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G38470.1 WRKY DNA-binding protein 33; Swiss-Prot: sp|Q6IEQ7|WRK24_ORYSJ WRKY transcription factor WRKY24; TrEMBL-Plants: tr|V7APT3|V7APT3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0201800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29432038..29435978) extracted from Lotus japonicus Gifu genome v1.2.
CCGCCACTTCTCTCAGTGTTATATGGTCATAGGCTTGCCCAGTCAAGTCAAACCCACAACCTTTGACACCATTCATTCAT TTTCCACGGTCAAACCTCCAAACCCATTGCTATATGGTAGTGTTCATGACATGTCATAAAATGCACCATTCCCTCTCTTC TTCTTTCTCTCCCAATTCAAAGTTCAAAGTTCAAACCACAACCTTTAATTTCCTACCACAATTCTTCACTATGTCTTTCA GTTTCAGTAACCTCCTCTCTAACAACAATAACAATGATTATAACTTGACCATGGATCATGATGAAGATGATAAACAGAGA ACTTCTCAAAACAATGATAACTTCAAGTCATTTGCACCTCCTTCACTATCCCTCTCTCCCTTTTCAACTACTTCTGATTT TCCACCTGGTTTCAGCCCATCTGAATTCTTCAATTCACCTATGTTTTCTTCTCCAAATGTATGTTACAATTAACCTCACT TCAATTGTTAGTTTTTATTTCTTTTTTGGGTATATGTTTTGCAACTCCAATGTCAATACTAATTGTGGGTTTTTCTTGTT TTTTTATGTTGGTTTTTAGATTCCTGCATCTTACACAACAACTGAGCCTTGTTCTGCCCAGAGCCAGAGCATGAACCAGA TGAACAGTTCAACTGAGGAGGAGGAAAATAGAAACTACTCTGAACTCACTTTCCAAAACCAAACAAGACAAATGCCTCTC TTTCAATCTTCCACAAACATGTCCGAAATGGTAAGTGATTTATTTTCTGACAAATCTTACTAAAAATATCAATTTTTTTG TGTTTCTATTCTCTGATCTTTACTAGCTTGGATAAGCTTGTCTTATTAGCATTTCTGCTTTTACTATTAGTGGGGTTGGG CAGTTTATCATAAATTTGCTTTTGATTGCTTTGGTTAAGTCATGGTTTTCCTCTAATTAATCAAGTTTTTATATATTTGT CTGTACAAGCTTTGTTTGAACAGTTTTGACTTTTGGCAATTCAAACTTTGACTGGCATATAAGTTGACAGAGTCAAACTT GAAACTATGTCCTTGTATGTTTGCAGAAATTCTTGGCTATATATCTCTTACAGTACTTTCTGCCATTTATTTTACACTTA TAACTTAAAAGTTGTCATTATCTATTTGTTGTCAGCTTAAATAAAACATTGACAAAATGTTAAGGCATGTCTTTACAATT TCCATTTTTTATTTCTTGATTCTTTAACTAGGGTCATGAATCTCTCATGTTAAAAACTCACATGAATTTATCATGTGAAA AAATTGTACTTTTATTTCTCTTCATGGATAATTCATGAAGAAGCCCTATCAAAATGTGTGAATACTGAATACTTATCAAG AGAATGATGTATACAAAATTTTACACGATAAGTTCACATTAAATTTTAACTTGAGATTATTCATTGCTACTTTTATAGGA CATTTATTAACAAGACCCATAAAATTTAATATTGTAAAAGTTGATGATATAGCTAAATATTAAATGGTATTGACTTTAGC ACTTGAGAATTTGTCTTTATCTTTGTCTTTATGTTTCTATGTACTTCATTGCAATGCTTATCTTCATTGATGCTTTGGAA TATGCTAACCTTGCATTTATTTGATTTGTGTATTAATACTTGTTCTATTTTGAACTTCAGGAGCCACTGAAGAAACAGGA CACAATGACTTCCAATGAAACTGCAAAGCAAATTGAGTTTTCATTTGAGGAGACAGCAGTGAAATCTGAGAATCCATCCA GTCAGAGCTTCTTCTCCTCAGAACTGACCACAATCAAACCTGAAGTTCAACCTAATTCAGGTCATTTTAACCCCAGTAAT GCTTCTATGTCTATCAGAGAACAACAAAGGAGATCAGAAGATGGATACAAGTGGAGGAAATATGGAGAAAAACAAGTGAA AGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACGCACCCGAGTTGCACGATGAAGAAGAAAGTTGAGAAGTCTGTGG AGGGACACATCACTGAAATAGTATACAAGGGAACTCACAACCATCCTAAACCACAATCTACCAAAAGAACAAGTTCTCAA TCTATTCTTCAAGCATCTGTATCCTGCAACAACTCAGGGATTTCTGAACTATCTATGGGAGAGGAAGACTTGGACCAAAC ATCACAACTTAGTTATTCTGGTGGGAATGATGATGACCTTGGACCAGATGCCAAAAGATGGTAAGATCAGAAAAATACAT TCTATTCCTCTAATAACATGATTTACAATATGCATGTTTAGAAATCCCTTTACAATTAATTCTAAAGCCAGAATCAATAC TTGCAAGATGCTTAACGCGTGTTTGAATCAGTGTTTGTCACAATTGATTTTTGGTAAAATTGATTACAGTTAAAGTGAGT TGAAAGTTGAGTGATTTATGTTTGAATACATTTATGAAAAATGTGAGTGTTGTGGGGTAATGTTGTGAGATTCAGTTGTG AAATCTCATAATTGATTATGTACAATGCATAAACTACTCTCTAACGCTTCCACTAGAATTGACTACCAAACATCAATATG AAATAATTGATATTTTCTCGACGAGAATTGATTCAGTTGTGAAATCTCATAATTGATTATGTACACTTTTGTGAGTAGCT TTTGGGTTTCATAATTGATTATAAGGGAACAGAAGCTGTCCAAACAGGCAAAATATTAAAATGAATTTTCATGACAAGCT TGGTTTCAGCACTAATTATGATTCTTATTATTTCAGGAAGGGAGAGGATGAAAATGATGGCTATTCCTATTCCGCCCCTG GAAGCAGAACTGTTAAGGAACCAAGAGTTGTGGTTCAAACTACAAGTGAGATTGACATACTTGATGATGGCTATAGGTGG AGAAAATATGGGCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGTATTTTGAAAACATGTTTCAATCATACCTATAAAT CAGTTTTTTTTTTCATAAGCAATTCTGAAATTCAGAAGCTAGTCATAGAAACTTCTCACCTGAATTGATTCTGGTTTTAG AATCAATTGTAGAATGATTTTTAAACACGCACTTAATCGATAAAAACTAAGACCCTTTATTTATATGGTTCTTCATGCAA CAAAGCCATAACTTGCTCAAATATACTTTTTTTGCAGGAGCTACTACAAATGTGTGACCCCGGGTTGTGCAGTGAGAAAA CATATAGAGCGAGCTGCGAATGACATGAAAGCTGTGATCACCACTTATGAAGGAAAACACAACCATGATGTGCCGGTAGG ACGAGGAATCGCAAGCCATAACATCAATAGAACTTCTCTGAACAGCAACACCACCAATATAGCTACCCCGGCTCCTATAA GGCCCTCAGTGGTGACTAATTGTTCGAGCTCAGCAAGTTTTGCAAATTCACTTCATGATTCAAAGCTAGAAATGTCAGGA AATCAAGAATATTTTCATGTAAACAAGTTGTTTAACCCTGGAAGCTTTGGATACTCGGGATTGAACAGATCAATGGGTTC ATACACCAATTCGGAACAATATTCAGATGCTACATACTCAGCTAACGATGACTCCTTGCTTCAGTCTTTTCTGTCAAAGA ATTATTATTGACATAGTCTTATATAGGATATAGGAAGTTAGTTGTTCTTATCAGTATAGAATAAAAAATAATAATATACA TGATGTACTAATGTAGTCACCAAGATTAGAGACTAGAACTACATTAACCTAAAGCTTGACTAGAGCTAGCCCTTTCTTAG TTGTTGCAACTTTCAATTTTATAGTAGGATACAGAATATGTGTTGACTGGTGAAATCTATGATTATTTGATTGTATTTGT TTAGCACAAACGAAAAGAAGTTTCTTTGGCCTAGTCTTGCGACATTCAATTTCTCACTTAAGCGATGTGTGTTTTGTGTT GGGAATTTCTGTTGAGCTATG
CDS sequence (LotjaGi3g1v0201800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGTGTTCATGACATGTCATAAAATGCACCATTCCCTCTCTTCTTCTTTCTCTCCCAATTCAAAGTTCAAAGTTCA AACCACAACCTTTAATTTCCTACCACAATTCTTCACTATGTCTTTCAGTTTCAGTAACCTCCTCTCTAACAACAATAACA ATGATTATAACTTGACCATGGATCATGATGAAGATGATAAACAGAGAACTTCTCAAAACAATGATAACTTCAAGTCATTT GCACCTCCTTCACTATCCCTCTCTCCCTTTTCAACTACTTCTGATTTTCCACCTGGTTTCAGCCCATCTGAATTCTTCAA TTCACCTATGTTTTCTTCTCCAAATATTCCTGCATCTTACACAACAACTGAGCCTTGTTCTGCCCAGAGCCAGAGCATGA ACCAGATGAACAGTTCAACTGAGGAGGAGGAAAATAGAAACTACTCTGAACTCACTTTCCAAAACCAAACAAGACAAATG CCTCTCTTTCAATCTTCCACAAACATGTCCGAAATGGAGCCACTGAAGAAACAGGACACAATGACTTCCAATGAAACTGC AAAGCAAATTGAGTTTTCATTTGAGGAGACAGCAGTGAAATCTGAGAATCCATCCAGTCAGAGCTTCTTCTCCTCAGAAC TGACCACAATCAAACCTGAAGTTCAACCTAATTCAGGTCATTTTAACCCCAGTAATGCTTCTATGTCTATCAGAGAACAA CAAAGGAGATCAGAAGATGGATACAAGTGGAGGAAATATGGAGAAAAACAAGTGAAAGGAAGCGAAAATCCAAGAAGTTA TTACAAGTGCACGCACCCGAGTTGCACGATGAAGAAGAAAGTTGAGAAGTCTGTGGAGGGACACATCACTGAAATAGTAT ACAAGGGAACTCACAACCATCCTAAACCACAATCTACCAAAAGAACAAGTTCTCAATCTATTCTTCAAGCATCTGTATCC TGCAACAACTCAGGGATTTCTGAACTATCTATGGGAGAGGAAGACTTGGACCAAACATCACAACTTAGTTATTCTGGTGG GAATGATGATGACCTTGGACCAGATGCCAAAAGATGGAAGGGAGAGGATGAAAATGATGGCTATTCCTATTCCGCCCCTG GAAGCAGAACTGTTAAGGAACCAAGAGTTGTGGTTCAAACTACAAGTGAGATTGACATACTTGATGATGGCTATAGGTGG AGAAAATATGGGCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGAGCTACTACAAATGTGTGACCCCGGGTTGTGCAGT GAGAAAACATATAGAGCGAGCTGCGAATGACATGAAAGCTGTGATCACCACTTATGAAGGAAAACACAACCATGATGTGC CGGTAGGACGAGGAATCGCAAGCCATAACATCAATAGAACTTCTCTGAACAGCAACACCACCAATATAGCTACCCCGGCT CCTATAAGGCCCTCAGTGGTGACTAATTGTTCGAGCTCAGCAAGTTTTGCAAATTCACTTCATGATTCAAAGCTAGAAAT GTCAGGAAATCAAGAATATTTTCATGTAAACAAGTTGTTTAACCCTGGAAGCTTTGGATACTCGGGATTGAACAGATCAA TGGGTTCATACACCAATTCGGAACAATATTCAGATGCTACATACTCAGCTAACGATGACTCCTTGCTTCAGTCTTTTCTG TCAAAGAATTATTATTGA
Protein sequence (LotjaGi3g1v0201800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVFMTCHKMHHSLSSSFSPNSKFKVQTTTFNFLPQFFTMSFSFSNLLSNNNNNDYNLTMDHDEDDKQRTSQNNDNFKSF APPSLSLSPFSTTSDFPPGFSPSEFFNSPMFSSPNIPASYTTTEPCSAQSQSMNQMNSSTEEEENRNYSELTFQNQTRQM PLFQSSTNMSEMEPLKKQDTMTSNETAKQIEFSFEETAVKSENPSSQSFFSSELTTIKPEVQPNSGHFNPSNASMSIREQ QRRSEDGYKWRKYGEKQVKGSENPRSYYKCTHPSCTMKKKVEKSVEGHITEIVYKGTHNHPKPQSTKRTSSQSILQASVS CNNSGISELSMGEEDLDQTSQLSYSGGNDDDLGPDAKRWKGEDENDGYSYSAPGSRTVKEPRVVVQTTSEIDILDDGYRW RKYGQKVVKGNPNPRSYYKCVTPGCAVRKHIERAANDMKAVITTYEGKHNHDVPVGRGIASHNINRTSLNSNTTNIATPA PIRPSVVTNCSSSASFANSLHDSKLEMSGNQEYFHVNKLFNPGSFGYSGLNRSMGSYTNSEQYSDATYSANDDSLLQSFL SKNYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 58 | 84 | 27 | - | – | |
| MobiDBLite | 58 | 72 | 15 | - | – | |
| PANTHER | 63 | 531 | 469 | 2.4E-163 | – | |
| PANTHER | 63 | 531 | 469 | 2.4E-163 | – | |
| MobiDBLite | 220 | 247 | 28 | - | – | |
| MobiDBLite | 220 | 238 | 19 | - | – | |
| Gene3D | 229 | 304 | 76 | 8.7E-27 | ||
| SUPERFAMILY | 241 | 303 | 63 | 3.27E-23 | ||
| SMART | 244 | 302 | 59 | 1.9E-31 | ||
| ProSiteProfiles | 245 | 303 | 59 | 22.079 | ||
| Pfam | 245 | 301 | 57 | 4.9E-23 | ||
| MobiDBLite | 294 | 315 | 22 | - | – | |
| MobiDBLite | 299 | 315 | 17 | - | – | |
| MobiDBLite | 339 | 375 | 37 | - | – | |
| MobiDBLite | 351 | 365 | 15 | - | – | |
| Gene3D | 379 | 455 | 77 | 1.6E-33 | ||
| SUPERFAMILY | 386 | 454 | 69 | 6.15E-28 | ||
| ProSiteProfiles | 389 | 454 | 66 | 37.126 | ||
| SMART | 394 | 453 | 60 | 1.3E-35 | ||
| Pfam | 395 | 452 | 58 | 4.0E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0201800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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