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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0202500 |
| Transcript ID | LotjaGi3g1v0202500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase; TAIR: AT3G51680.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SCU0|SDR2A_ARATH Short-chain dehydrogenase reductase 2a; TrEMBL-Plants: tr|A0A1J7GKB9|A0A1J7GKB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29558150..29559634) extracted from Lotus japonicus Gifu genome v1.2.
CCCCGGAGTCAATTGGACTCAAAATCCTCTCCTATAAGTAGCCGTATTTGACATTTTAGCAGCACTTGTTCTCTTCTTCT TCCTTCGTTTCTCTCCCTTTTCCTCTCACCGTTGCTTCGCTCTCACCACCGAGAGACACAACACAACACACAGCCATGAC CATGGTAACCGCCGAAGTAGAGAAACCCCTTCAAGTACTTCCCATTCTCTCAAGAGACACCACTTTCACATCTCTATCAA GAAGGTACTAATTTCAACACACAAATTCATTTTCCTGCATTTTTCACAAATCACACAGATGCAGCTCAAATGCTCGATCC ATGTTTTGACTCTGAAAGAAGTTTCATTGTTCTTTCTCTGATCTCTGTTTTCATTTTTCCAGGTTGGAAGGTAAAGTCGC CATTGTAACTGGCGGGGCCAGAGGAATAGGTGAAGCAACGGTGAGAGTTTTCGTGAAGCATGGCGCAAAGGTAGTAATCG CCGATGTCGAGGACACACTCGGAACCATGCTTGCAGAGACATTAGCTCCTTCAGCTACTTACGTCCACTGCGATGTAAGC ATTGAAGAAGACATTGAAAATCTGGTGAGTTCGACAATCTCTCGCTATGGACAGTTAGACATCATGTTCAACAATGCCGG TGTTCTCGGGAACCAGTCCAAGAACAAGAGCATTGTGAATTTCGACCCTGAAGAGTTTGATAAAGTGATGCGCGTGAACG TGAAGGGAACGGCGCTTGGAATGAAGCACGCGGCGAGGGTGATGATTCCGAGGGGTGTTGGGTGTATAATCTCCACCGCG AGTGTGGCTGGGCTTATGGGTGGGCTTGGGCCGCACGCTTACACGGCCTCGAAGCATGCCATTGTTGGGCTCACGAAGAA CGTGTCTTGTGAGTTGGGTAGGTATGGGATTAGGGTGAATTGCATTTCTCCATTTGGGGTCGCCACGTCGATGCTTGTCA ACGCGTGGCGAACGAGCGGTGGTGGTGGTGGTGACGACGATAAATGTGGCGATGACGATGATGATAGCTTCAATTTTGGG AATTTTGGGTTGCCACTTCAAGAGGAAGTGGAGAAAATGGAGGAGTTTGTGAGGGGGTTGGCAAACTTGAAAGGAACAAC TTTAAAGGCTAAACATGTTGCTGAGGCCGCTCTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGCGGTCATAATCTTG TTGTGGATGGTGGAGTCACCTCTTCAATAAATTGTGTTGGCTTGTAATTTTAATGTTAGTTTTGTTTTAATCTTCTTCTT GTTGTTGTATTTCTAACTAACTAGTGCTCGTAGGGTCCTAGGTTAAGAAACATTGATCAATTAAGATCATGTAATCTCTT ATTTGTCTTTAGGTTAGTGGTGGAATTAGTGGTGAACAAATATTTTTCCTTGTAATATAGTTTCTCAATCATTCTTGCAG TTCTATTCTTTTATAAAACAATCTCAATTTTAATTTCAAATCTTG
CDS sequence (LotjaGi3g1v0202500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATGGTAACCGCCGAAGTAGAGAAACCCCTTCAAGTACTTCCCATTCTCTCAAGAGACACCACTTTCACATCTCT ATCAAGAAGGTTGGAAGGTAAAGTCGCCATTGTAACTGGCGGGGCCAGAGGAATAGGTGAAGCAACGGTGAGAGTTTTCG TGAAGCATGGCGCAAAGGTAGTAATCGCCGATGTCGAGGACACACTCGGAACCATGCTTGCAGAGACATTAGCTCCTTCA GCTACTTACGTCCACTGCGATGTAAGCATTGAAGAAGACATTGAAAATCTGGTGAGTTCGACAATCTCTCGCTATGGACA GTTAGACATCATGTTCAACAATGCCGGTGTTCTCGGGAACCAGTCCAAGAACAAGAGCATTGTGAATTTCGACCCTGAAG AGTTTGATAAAGTGATGCGCGTGAACGTGAAGGGAACGGCGCTTGGAATGAAGCACGCGGCGAGGGTGATGATTCCGAGG GGTGTTGGGTGTATAATCTCCACCGCGAGTGTGGCTGGGCTTATGGGTGGGCTTGGGCCGCACGCTTACACGGCCTCGAA GCATGCCATTGTTGGGCTCACGAAGAACGTGTCTTGTGAGTTGGGTAGGTATGGGATTAGGGTGAATTGCATTTCTCCAT TTGGGGTCGCCACGTCGATGCTTGTCAACGCGTGGCGAACGAGCGGTGGTGGTGGTGGTGACGACGATAAATGTGGCGAT GACGATGATGATAGCTTCAATTTTGGGAATTTTGGGTTGCCACTTCAAGAGGAAGTGGAGAAAATGGAGGAGTTTGTGAG GGGGTTGGCAAACTTGAAAGGAACAACTTTAAAGGCTAAACATGTTGCTGAGGCCGCTCTTTATCTTGCTAGTGATGAAT CCAAGTATGTTAGCGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCTTCAATAAATTGTGTTGGCTTGTAA
Protein sequence (LotjaGi3g1v0202500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMVTAEVEKPLQVLPILSRDTTFTSLSRRLEGKVAIVTGGARGIGEATVRVFVKHGAKVVIADVEDTLGTMLAETLAPS ATYVHCDVSIEEDIENLVSSTISRYGQLDIMFNNAGVLGNQSKNKSIVNFDPEEFDKVMRVNVKGTALGMKHAARVMIPR GVGCIISTASVAGLMGGLGPHAYTASKHAIVGLTKNVSCELGRYGIRVNCISPFGVATSMLVNAWRTSGGGGGDDDKCGD DDDDSFNFGNFGLPLQEEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 317 | 301 | 1.2E-155 | – | |
| PANTHER | 17 | 317 | 301 | 1.2E-155 | – | |
| CDD | 30 | 309 | 280 | 1.95385E-122 | – | |
| SUPERFAMILY | 32 | 309 | 278 | 2.33E-69 | ||
| Pfam | 34 | 225 | 192 | 2.1E-50 | ||
| PRINTS | 35 | 52 | 18 | 1.6E-31 | ||
| PRINTS | 106 | 117 | 12 | 1.6E-31 | ||
| PRINTS | 106 | 117 | 12 | 6.1E-10 | ||
| PRINTS | 157 | 173 | 17 | 1.6E-31 | ||
| PRINTS | 163 | 171 | 9 | 6.1E-10 | ||
| PRINTS | 183 | 202 | 20 | 6.1E-10 | ||
| PRINTS | 183 | 202 | 20 | 1.6E-31 | ||
| PRINTS | 204 | 221 | 18 | 1.6E-31 | ||
| Pfam | 259 | 309 | 51 | 1.2E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0202500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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