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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0203400 |
| Transcript ID | LotjaGi3g1v0203400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G40435.1 transcription factor SCREAM-like protein; Swiss-Prot: sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2; TrEMBL-Plants: tr|I3SBN8|I3SBN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0203400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29681096..29683551) extracted from Lotus japonicus Gifu genome v1.2.
CACAATATTTTTTCTCCACCCAATCGTCCTATATATAAAAATTCCCCTAAGCCACATATGGACGTGAGAAGAAACATAGA AACCAAAATCATTTGGAGGAAACTAAGTTTGAAGAAGCTAGGATTAATGGATTCAAATGAGCGTAAAAAAGCAGCTATGC AGCGAAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTGTACGTAATTGTCTCCACACAAAATCTGCACTCAAT AAGATTTATTTATTTTTGGTGAAATCAATTAGATTTAATTTCATTGATCGTTAACGTTAATATATATTTTCTGTTTTTTT CTTTTTGATAAATTTTGTTGGCAGATGAACAAGGCCTCAATTATTGTGGATGCTACCAGATACATAGAGGAGTTGAAGCA AAAAGAGGAGGGATTGAACTCAGAGATTGAAGCAGCTGAATCATCAATCTCCCAAGATGAACTACCTAAGGTTAGTTATT GTTTTTCATTCATTTTGTCTCTTGGACTATTAATATATAGCACTTAGTTAATTCCTTTTATGATTTTTCAAATTTTCTCA GGTCACTGTAGAAACCCTAGAAAAGGGTTTCCTCATTAATGTGTTTTCAGAGAGGAATTGCCCTGGGATGCTTGTGGCAA TACTGGACGCCTTTGAAGAACTGGGTCTTGATGTGCTCGATGCTAGGGTTTCCTGTGAAGACACTTTCCAACTGGAAGCT GTTGGAGGAGAAGTAAGACAATAGACTAGGATATATATTTGACATATTTTCCCCGGCCCTTTTTTTTCTTAATAAATTCT GATGCTTTATCTATTATGAACCAAGAAAAATATGGTTCACGAATTCAAAGAGTTTGCAAATCAATTTTAACAACGAGGAA CATGTTGTTACATCTGGAACATGTTGTTACATCTGTTTCTTATTAACTGTGGAAAACGAAAAGACACACATTAAGAAATT CAATTAATTTAGTTAACTTTCTGAAAAGTATTATTTGTTTTCTTCTTTTACCCCTTTAAAATGTATTTTTTCTCTCCTTA TTTTTTTTCTTGCAAGTGCATTATTTAGAAAACATCAATTCATTTTCTCTTGAAATTCTAAATAAACAGTTAAATAGAAA TACATTTTTTCTCTCTAAGTGAACAGTTAATAAAAGACGGGGGGATATAGAACCTTTTAATAATTAACATGTCGATTATA GTAATTGCCCTATTTTTATTCATCTTTTACTTTTCCATCTTAAATAATTATTTCCAAAATCATTTCACTAATTTTGAGCT TAATGAGTTACAATATTAATTATATATAATTTTTTTTCTTTTTATTTTCTTTGTCCAATTATATGATAGATCTTTTTAAA ACCTTAGCATATATTTCCAATATGCTCATTTGTGTGCTAAAATTAATTATTTTTTGTTAAAAATTGGTCCAAAACATGTT TTTACAACTTATATTTACTACATGATATTTGCAATATAATCTTTAAGTGTTAAAACTAAATTACGGAGAAACCGTTTTTT AACCTGTGAACTATGTTTTTCTTGGTGCGCGGTACAAGCTTTCTTATAATACATATATACAATTATTCTAGTTTTAGTTT TTCTTTCGGAATGATTTTAAGTCTAAAATCATTTCACATCTCTTGGACTAGTGGGATTACAATTAGTTCTGAATCATATG AAAGAGTCCGTGTCGTTCGACATGAAAATAGCATCATTCAGAAAAGAGCATCATGGCAGGCTTGTACAATTTTGGCTTGA GCGACATATCTAAATTCTAGTTTCAGAGTCCGAAGTACTGCCATGATAATGAGTGTGGCTCCCATGAAAGGATTCTGATG AAGCAATACAGACACCTAAAACATTATCCACTTTTTGTCTTCGAGTTAATTAATTATTGGTTGTTATAGTTAATTGAACG GTGAGAAGTTGAAAATTTTCTCATATGCTCATGATGATTCTGATGTGTCTTTCAAAAACCCTGGTTAAATTTTGCAGAGC GAAGAAAATGACAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTTCAGGCAATCAACAGCATGGATTAAATAATCCA AAAACAGATGTGGGAAAAAACAATAAAAAATTATATCCTTTTTTTAATCGTCATTGTGATAAATGTAGAAGTTACAATTC GTGTGAAAGAATTTTTAAGTGTGATGATAGTGTATATAATATTATTCAGTGAAAATGTAAAGTACCTCTTCAATGGTCCT TACACGAGATGTGGCTTATCAACAGCTTATTCCTAGTTTATGGAAAAGAATGAATGGACAGGGATATCTTAATCTTCACT GAGCTAGTGAGAAAAAAAAGAAACAATTATAAGATTGTCTTTCAGTTTACCATCTTGCTAATGCATTCATTATCAATAGG AAAAATATTTTCAAACATCGATCTCACATGTGCATATAAACACCAAATTAATCTAG
CDS sequence (LotjaGi3g1v0203400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGTGAGAAGAAACATAGAAACCAAAATCATTTGGAGGAAACTAAGTTTGAAGAAGCTAGGATTAATGGATTCAAA TGAGCGTAAAAAAGCAGCTATGCAGCGAAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTATGAACAAGGCCT CAATTATTGTGGATGCTACCAGATACATAGAGGAGTTGAAGCAAAAAGAGGAGGGATTGAACTCAGAGATTGAAGCAGCT GAATCATCAATCTCCCAAGATGAACTACCTAAGGTCACTGTAGAAACCCTAGAAAAGGGTTTCCTCATTAATGTGTTTTC AGAGAGGAATTGCCCTGGGATGCTTGTGGCAATACTGGACGCCTTTGAAGAACTGGGTCTTGATGTGCTCGATGCTAGGG TTTCCTGTGAAGACACTTTCCAACTGGAAGCTGTTGGAGGAGAAAGCGAAGAAAATGACAGCATCGACGCGCAAGTGGTG AAGCAAGCAGTGCTTCAGGCAATCAACAGCATGGATTAA
Protein sequence (LotjaGi3g1v0203400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVRRNIETKIIWRKLSLKKLGLMDSNERKKAAMQRKLQQLRSVTNSSAMNKASIIVDATRYIEELKQKEEGLNSEIEAA ESSISQDELPKVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESEENDSIDAQVV KQAVLQAINSMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 24 | 44 | 21 | - | – | |
| PANTHER | 24 | 171 | 148 | 1.1E-73 | – | |
| PANTHER | 24 | 171 | 148 | 1.1E-73 | – | |
| Gene3D | 25 | 91 | 67 | 8.4E-6 | ||
| SUPERFAMILY | 33 | 84 | 52 | 5.37E-5 | ||
| Coils | 56 | 83 | 28 | - | – | |
| ProSiteProfiles | 103 | 172 | 70 | 8.566 | ||
| CDD | 112 | 168 | 57 | 5.18436E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0203400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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