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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0204600 |
| Transcript ID | LotjaGi3g1v0204600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT2G45080.1 cyclin p3;1; Swiss-Prot: sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1; TrEMBL-Plants: tr|A0A0L9VR13|A0A0L9VR13_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0204600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29988892..29990820) extracted from Lotus japonicus Gifu genome v1.2.
TCTCAATCCCATTTGTCCAAAGTCCTTCACACCCTAGTGCCCACTCCATTCTTTATATATAAAGCCCACTTCTAAAACCT TCTTCTACACACACAACCCCCATCAACATTCAATACTTCCCACTTCTTGTTTCACAACAAATACCCTCTTTGCCTTGTAG CACATAGACCAATCCCTTTCAAAACCCTCTTCCTCTCTAGAAAACAAAAACAAGATCAATTTCATCATGGCTTCTTCTTC TTCATCTTCTTCTCTGACAATATCTCCAAGAAAACTGCGCTATGATTTGTACTCCTACTCATACCAAGAAGATTCCAACA CCCCATTAGTGATAAACGTTCTCTCTTCACTGATTGAGAGAAACATGGCCAGAACAAAGAGAATTGTGAAGAACTGTTCT CGTTCTCTATCCAAAGCAATCAGCGCAAACATCTTCGATTGCAGAGAGATCCCTGACATGACCATCCAATCCTATCTCGA GAGAATTTTCAGGTACACTCGTGCAGGACCCTCTGTGTATGTGGTTGCCTATGTCTACATCGATCGGTTTTGTCAGAACA ATCCTGGGTTTCGAATCAATGCCAGAAACGTTCATAGACTTCTCATAACAACGATAATGGTGGCTTCTAAGTATGTAGAA GACATGTAAGTGCTCTGCAGATAGAAAAATTGCTTTCAATTTTGTTAATTTTACATTGAATTCAATACCCTAATTTGGTA ATGTTTTGTTAAATTGGGGAAAAGTTTGTTTCTTTCAATCTGAAATCGACAATTTTCTTGATTTCCAATGATGGGTCGTT TTCATTTTCCATCAATTTTGCGTTTTCTTGAATTGGAAAAAACAGGGTGATGCTGAATTGGGGTTTTTCTTATTTGACAG GAATTACAGAAATTCATACTTTGCAAGAGTTGGTGGTTTGGCAACAAATGAATTGAACGCGTTGGAGCTTGAATTTTTGT TCATGATGGGTTTCAAATTGCATGTGAATGTGAGTGTGTTTGAGAGCTATTGCTGCCATTTGGAGAGGGAAGTTAGCATT GGAGGAGGGTATCATATTGAGAGAACCCTAAGGTGTGCTGAAGAAATCAAAACAAGGCAAATTGAGGAAAGGGGATACAC ACAAATCGCACGTGTAATGTTGTAGAATGAATGGTTAGGGATTTTTTTTTTCTGTTTTAGGTTTCTTTTTCTGCCTGCAA ATGAAGAAAATGTAGGTTATCTGTACAGATCAGTGTAAATCTAAATGTTTGTTGGGGGATTGAGATTTTAGAACAACAAG TCAGGCCAAGGGAGAGGGATGTACAAATTTCAACCCGTTTGGATGCGGATCAAAGAGCACTTACTGGAGTTTATCTAATG ATTTATCTAGTAGATAAACTCCAATAAGTTCCATCAAAACCTGTATCCAAATGGGCTCTTTGTCTTGTTTCATTCATCAC AAGGAAACAGTGTATTTTATCAAGAGTTTTGGCTGAAGATTTCTGAGATTTAACTTCTGTCTCTGTCTCTCTATGTGCAT ATTTTAACCCCTTGAACTTTAATATTTGGATATGCTTTTGTATGATAGAAGATGTAGGTGTCAATATCTTGAAACTTGCT TACATAGAAATTAATATTCTAGTTCATATGTAAAAGAATCAGTAATTTGTATGCTGTAAGAATAATAAAACTGGGTTGAC AAAATGAAGTGACTTTGGAATAATGTGTATATTGCTATAAAAAGTCTGGAGCTGCATGCTTCAAATATGTGGCATTTCCG TTTGGATACGGATTAAAAAGCACTTATTAAAGCTTATTTATTAGAAAAAGCAATTAATAAACTCTAATAAGTGTTCTTTG ATCTACATTGAATAAAGCTTAGAGAGGATTGTAAACCGGTGGCGTCTAGCTGCAAAGAGAGGATTGCAAACTGGGGTTTC ACTTGTCAA
CDS sequence (LotjaGi3g1v0204600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCTTCTTCATCTTCTTCTCTGACAATATCTCCAAGAAAACTGCGCTATGATTTGTACTCCTACTCATACCA AGAAGATTCCAACACCCCATTAGTGATAAACGTTCTCTCTTCACTGATTGAGAGAAACATGGCCAGAACAAAGAGAATTG TGAAGAACTGTTCTCGTTCTCTATCCAAAGCAATCAGCGCAAACATCTTCGATTGCAGAGAGATCCCTGACATGACCATC CAATCCTATCTCGAGAGAATTTTCAGGTACACTCGTGCAGGACCCTCTGTGTATGTGGTTGCCTATGTCTACATCGATCG GTTTTGTCAGAACAATCCTGGGTTTCGAATCAATGCCAGAAACGTTCATAGACTTCTCATAACAACGATAATGGTGGCTT CTAAGTATGTAGAAGACATGAATTACAGAAATTCATACTTTGCAAGAGTTGGTGGTTTGGCAACAAATGAATTGAACGCG TTGGAGCTTGAATTTTTGTTCATGATGGGTTTCAAATTGCATGTGAATGTGAGTGTGTTTGAGAGCTATTGCTGCCATTT GGAGAGGGAAGTTAGCATTGGAGGAGGGTATCATATTGAGAGAACCCTAAGGTGTGCTGAAGAAATCAAAACAAGGCAAA TTGAGGAAAGGGGATACACACAAATCGCACGTGTAATGTTGTAG
Protein sequence (LotjaGi3g1v0204600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSSSSLTISPRKLRYDLYSYSYQEDSNTPLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTI QSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFARVGGLATNELNA LELEFLFMMGFKLHVNVSVFESYCCHLEREVSIGGGYHIERTLRCAEEIKTRQIEERGYTQIARVML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 226 | 221 | 6.6E-119 | – | |
| PANTHER | 6 | 226 | 221 | 6.6E-119 | – | |
| PIRSF | 9 | 224 | 216 | 5.7E-69 | ||
| Gene3D | 22 | 225 | 204 | 2.7E-48 | – | |
| Pfam | 62 | 173 | 112 | 1.4E-31 | ||
| SUPERFAMILY | 82 | 174 | 93 | 3.25E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of cyclin-dependent protein serine/threonine kinase activity | Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. | ||
| Molecular function | Protein kinase binding | Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
Expression pattern of LotjaGi3g1v0204600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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