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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0205000 |
| Transcript ID | LotjaGi3g1v0205000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT3G60580.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9; TrEMBL-Plants: tr|A0A0B2NQT6|A0A0B2NQT6_GLYSO Zinc finger protein ZAT9; Found in the gene: LotjaGi3g1v0205000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30073142..30075866) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCACAGTTTCGCATATCGCAAAACAGAAACAGAGTGTGTTGTGCGTTTGTTTGTTTTGCTCTGTTTTTCCTTTTTTC TTTGCATTTTTGGTTGATGATGATTGAGAAACACAGGTGCAAACTCTGCTTCAGAACCTTCTCTAATGGCAGAGCATTGG GTGGTCACATGAGGTCTCACATGATGCACCTACCGCTTCCACCAAAACCGAACGAGTCACCACCACCGGCGACGATTCAA CTCAGCTTTGAGGCCGAGTCAGCTTCATCTCCTTCTTCCTCCTTTGAAGAAAACAACAACAAGGGATCACTCTCGTATGT GTTGAGAGAGAAGCCGAAGCGGAATTTCCGGTTCTCGGATCCTGAGTTTTTCGATGCTGGGTCGGTGATCCTCCATCATG ACAGGGAAAGTGAGAGCGAGTCGTCCAGGAATCTGACTCGGAAACGATCCAAGCGGACTCGGATCGAATCGACTAGTTCG GCTTCGAACACCACCACGGAGGAGGATGTGGCGTTTTGTCTCATGATGCTGTCTCGTGATAAGTGGAAGAGAAAACATCA TGAGCTAGTTCATGATGATGAAGATGAAGAAGACGATGAAGATGAAGAAGAAGAAGAGGAAGAAGATGAAGATAGTGATG ATGGCGATGAATCCGAGGAGGAAGAAGAGGTGAAGGTGACTACGAAGAAGGTGAGAGGAAGGTACAAATGCGAAACGTGT GACAAGACGTTTCGGTCGTACCAGGCATTGGGTGGACACAGAGCGAGTCACAAGAAGATCAAGGTAGTGAAAGAAGAAGA TCATGAAATTGAGAACAAGAATTTGGTGGTGGAGAAGAAGATTCACCAGTGTCCGGTTTGTTTTCGGATTTTTGGGTCGG GTCAGGCGCTGGGTGGGCACAAGAGAACCCATGTTACCGGGTCAGCGGCGGTGGTGACGGCGGCAGAGGTCAGGGTGGTT CCGGTTCTGAGTTCCCCGAAGTTTGGTGACAGTTTGATAGATCTCAACCTCCCTGCTCCGTTGGATGAGGATGATGTTAG CCAGATCGACGACTCTGCGGTTTACTATTGAATGAATCAGGGTTTCAAATTGCGGTCACAATCACAGTTTTGGGCAGAGT CCCTACATCGGCATCATAATCATGGATGCTACATTTGTCAGCAATTCCGCGATGTATCGGCAACTGCAACTACAATTTAG AACTTTGGGATGAACAATAACAACTTTCTTTTTGACTAAGTATTGATCATTGATCAAATCAAAAGGTACAAAATTTTGGT TCTTTTTTTAGATTTGTTCAGCGAATCTGGCCATACATTTTACTCTACAGTTGTTATTATTTATATAATAATAATTTTAT AATTTTTCTTAGGTTATTCTAACTGTAATTCAGTTCTATTAGGATTATGATGATGCTTTGTTTCTGTAAGATATTTTAGG GTTTGACTCTGTTAGAGCATCCGTTAATGGAGGAACTGAAGTTTTTAAGTTCAATCTGCCATATTCATGTTTTGAAATTC TGTTTTTTTTTTAAAAATAATTTGCTGGTAGATTTCAGGTGTTCATTGATTTTTCTTTTTCTATTACTGTGATGTAGAGC ATGCGAGTTTTAGTGGGGTTTCAGCTTCCAAGCAAGTAACTGCTTTACCATTCATTGCTTGTGTTGTGAGTTATGAATAT TAAATAGCAAAGTCATTCATAGGAAGTTGATCAACTTTCTTATTTTCTCAATAGAAAACTAACTTCCACTTCTGACCACC GGCATTGCACAGTTCATGGAGAAGAATATGTTTGTTTGTTTGTTTCATTACTTTATTTTTCCTCCCAAGGCATGGTGTTT TAAATATTTTCTCCTCTTTTCTTTTAGCAAAAAGAACACTTCTCTACCTCTAATAAGTAATCTATCTGTTTGAGTGCATG TTTGAACACACCGTGAAAAACCACTGTGAATTAGAAGTTAAGATCACACTGAATAACAGTAAAAATTAAGAAAAGTTATT TTTATCCATTATAATTTTGGTTTATTATGATTTTACATTATGTATCCAAACATGACCTGATTCCTAAATAAAGTTGTTTC TAGCTTTTTCAAAGAGATATTGATTACTAGAGATGATCAGGTGAGTGAATCAGAAAATTTAATGGCTATAATAGCCTGGT TATTGAAAAAGATTTTCACTTTAATTTTCTTTTCCATTTTTGGGAAATCTGTAAAGGTAAATACAGAGAACAGAGCAAAA GCAAGCAGATCCCTTAATTTTCTCTAACTAGATAGATTAATTTGGCTGAGTTGGGCGTGACTCAAGGTATCTAGCTGAGG CAGGCCTTTTGGTTCTTTATGGAAAACTTTCAGTCACGCTCATTAAATTTGTAATAAATGACATATGATCCTCCATCTCA TGCAATTGTTTTATTTTTATTTGATTTCATTTTGTGGGGCTTGGTGCATTAAGAGATCTTATTTGGTACTATTATGATTT AGACTTTAGTGGCTAGATTGCTGAGATTTCACTAGAAGTAATTCTGACTGGTTAACAACTAAAACAGAATAGAAAAGAAA CTATAAAGTGTGAAATTGTGGTTAGATAGAACTACTATTTATATGCAAAATTGCCTTTCAAAAAGTAGGACACTAGCTAG CAGCTACTGGCTACCTCTATCATTAGTCATGACACTTCTTTGAGTGGTGATACTATCTCATGTCTAGTTTATATACACTT ATGGC
CDS sequence (LotjaGi3g1v0205000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATTGAGAAACACAGGTGCAAACTCTGCTTCAGAACCTTCTCTAATGGCAGAGCATTGGGTGGTCACATGAGGTC TCACATGATGCACCTACCGCTTCCACCAAAACCGAACGAGTCACCACCACCGGCGACGATTCAACTCAGCTTTGAGGCCG AGTCAGCTTCATCTCCTTCTTCCTCCTTTGAAGAAAACAACAACAAGGGATCACTCTCGTATGTGTTGAGAGAGAAGCCG AAGCGGAATTTCCGGTTCTCGGATCCTGAGTTTTTCGATGCTGGGTCGGTGATCCTCCATCATGACAGGGAAAGTGAGAG CGAGTCGTCCAGGAATCTGACTCGGAAACGATCCAAGCGGACTCGGATCGAATCGACTAGTTCGGCTTCGAACACCACCA CGGAGGAGGATGTGGCGTTTTGTCTCATGATGCTGTCTCGTGATAAGTGGAAGAGAAAACATCATGAGCTAGTTCATGAT GATGAAGATGAAGAAGACGATGAAGATGAAGAAGAAGAAGAGGAAGAAGATGAAGATAGTGATGATGGCGATGAATCCGA GGAGGAAGAAGAGGTGAAGGTGACTACGAAGAAGGTGAGAGGAAGGTACAAATGCGAAACGTGTGACAAGACGTTTCGGT CGTACCAGGCATTGGGTGGACACAGAGCGAGTCACAAGAAGATCAAGGTAGTGAAAGAAGAAGATCATGAAATTGAGAAC AAGAATTTGGTGGTGGAGAAGAAGATTCACCAGTGTCCGGTTTGTTTTCGGATTTTTGGGTCGGGTCAGGCGCTGGGTGG GCACAAGAGAACCCATGTTACCGGGTCAGCGGCGGTGGTGACGGCGGCAGAGGTCAGGGTGGTTCCGGTTCTGAGTTCCC CGAAGTTTGGTGACAGTTTGATAGATCTCAACCTCCCTGCTCCGTTGGATGAGGATGATGTTAGCCAGATCGACGACTCT GCGGTTTACTATTGA
Protein sequence (LotjaGi3g1v0205000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIEKHRCKLCFRTFSNGRALGGHMRSHMMHLPLPPKPNESPPPATIQLSFEAESASSPSSSFEENNNKGSLSYVLREKP KRNFRFSDPEFFDAGSVILHHDRESESESSRNLTRKRSKRTRIESTSSASNTTTEEDVAFCLMMLSRDKWKRKHHELVHD DEDEEDDEDEEEEEEEDEDSDDGDESEEEEEVKVTTKKVRGRYKCETCDKTFRSYQALGGHRASHKKIKVVKEEDHEIEN KNLVVEKKIHQCPVCFRIFGSGQALGGHKRTHVTGSAAVVTAAEVRVVPVLSSPKFGDSLIDLNLPAPLDEDDVSQIDDS AVYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 122 | 120 | 2.4E-121 | – | |
| PANTHER | 3 | 122 | 120 | 2.4E-121 | – | |
| ProSiteProfiles | 6 | 33 | 28 | 10.45 | ||
| Pfam | 6 | 29 | 24 | 4.9E-6 | – | |
| SMART | 6 | 28 | 23 | 0.067 | ||
| ProSitePatterns | 8 | 28 | 21 | - | ||
| MobiDBLite | 27 | 46 | 20 | - | – | |
| MobiDBLite | 102 | 133 | 32 | - | – | |
| MobiDBLite | 102 | 123 | 22 | - | – | |
| PANTHER | 123 | 322 | 200 | 2.4E-121 | – | |
| PANTHER | 123 | 322 | 200 | 2.4E-121 | – | |
| MobiDBLite | 156 | 196 | 41 | - | – | |
| Coils | 158 | 178 | 21 | - | – | |
| MobiDBLite | 161 | 189 | 29 | - | – | |
| Gene3D | 200 | 272 | 73 | 4.7E-10 | – | |
| SUPERFAMILY | 202 | 272 | 71 | 5.93E-8 | ||
| Pfam | 202 | 227 | 26 | 8.7E-12 | – | |
| SMART | 203 | 225 | 23 | 0.011 | ||
| ProSiteProfiles | 203 | 230 | 28 | 10.554 | ||
| ProSitePatterns | 205 | 225 | 21 | - | ||
| ProSiteProfiles | 250 | 277 | 28 | 8.829 | ||
| SMART | 250 | 272 | 23 | 0.43 | ||
| Pfam | 250 | 272 | 23 | 8.3E-8 | – | |
| ProSitePatterns | 252 | 272 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0205000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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