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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0207600 |
| Transcript ID | LotjaGi3g1v0207600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|I1J7S5|I1J7S5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0207600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30575459..30578167) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAGCTGCAGCAGCAGCAGCACCACCTCTCTCCCTCCGACCAGCTCTG CTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTTATCTCCTTCTCCACCCAAATAATCACTGTTTTTTCTTTCA ACTTTCATTATTTCTCATGCTACTTCTTCTTCTTTCTTCTTGTTCTTTGTTTAGGTGAGTGTTCCTTGCACCAGTTTGTT CAAGACTGTCACTGTGAGATGCGGCCATTGCTCCAACCTTCTCTCTGTGAACATGCGTGGGCCGCTTCTTCCTGCTGCAA ATCAACTTCACCTTGCTCACTCCTTCTTCACTCCTCAAAATATTCTGGTATAATAACATACCTATATAGCTAGCTAGGGC GCGCTTTCAATAGATTACATTTTTCAATTTTTGTTTTGTTTTTATTTATTTGATTACCTAGCTAGTTACACTCACTTCTG CACGAGAATTGAAAATTTAAGCCCATCTTCTTTGAATACACCGTGGGAAAATTTCTGGTGTACCTAAAATCACGATAGAC AGACAGCTACAGAAGCTAATATAAGTTGTTTTTGTCTATTGTGATGTTTGTTCATTAATTGTGGTTTTCCATACATGAAC TGAGTTTATTTATAGGCGTCTGTTTAATTGATCAGGAGGAGATTAGAAATGGACCTTCAACAAACATGATGATGAATCAG CTGCCAAACCAAAATGACTTGGTCATGAGCACCATGCGAGGAGGGCATGAAGAAATCCCTAAGCCTCCACCAGCTAACAG ACGTGAGTATTTTAATTAATTATCTAACATTTTAACTTCTTTTTCAATTGTTGATGAATAATAGCTTTCATAGTGATAGT GAGGTTTTAGTTTAACACATTGACCTGTTTTTCACTTTTGTTTTTCTTTTCTTTTCTTTTCTTAAGTTTCTTTTTTCTAC TTCCCTGGTGAGGTGATCAGAGATTCTTCTGATACCACCAAACAAAAGCTTAAAAGGAAACTCTCCTGATTCCATTTTAC ACTTCTTTTAAGCTTGTAGTGGTGTCTCACAGTCACAGCCAATAAAGGAACAAAAGCAAAAATTGAGAAAAAAAGAAAAG TGTACTCTATCCCTATCAAAACTCACTTCTCAATCTGAAACAATGGCTAAAAGTTTTCTTGTTATACTACTGCAAGTGGC AAAGAAAGAACACTCTTTAGCACATTTATCTCATGCATTGCTTTTATAGTGCTTTCACAAAGTCAGATTCAATTAGTACT CCAAATTAATCATAAACATTTAATCTTCATCATTTTCAAATCGAAGCAACCCATTTCCATGCTCTTTAATTGGTTTCATA CAATCTCCTTTTTTTTTTCTTAAAGCAAAAGAAAGAAATAAAATCTCAAATTTCTTAAATCATTTTGTTTCTCTTTGTGT CTGTGCATCATGATGTCTCCTTACATGCAACAATGAGTGAGACAGATTTCTTCCCCCAGAAAATATAGTGCTGAATCCAT TGGGAGAGTGATTGTTAGAGATAATGATGAGGTAATGATGGAAAAGAGAGGAGTGGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAATTAGGTTAGGCGAAATTTCAGCAAAAGTGATTTAATGTTTTCCTGTCTGTTTGCCTGTACAATGTC CGGGTGTCCAGCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGTAAGTTTAGTTACATTCAT TTCCCATCTAAATTTAATTAGCAATACTAGTTAGCTTTCAATGATAATGGTTTTGGTAACTCAAACATTCATCATAAAAT AATTATGAAACTGTTTAGTGCATTTTTCAAAACACAGTAAAAAATCATGGCAACTTAAAATTATGGTGAATAGAAACAAC TTTTATTAACAGTTATTTATGTTTTTATTTATCATGATTCTGACTTCACCGTAATTTTTGTGACATATCTAACTATGCAT TCAAATCCTTATTTTTTTAATTATTGGATAACCTTCACATCATATAAATTTCAGGGATGAGATCCAACGTATCAAAGCTG GGAATCCTGATATCAGCCACAGAGAGGCTTTTAGTGCTGCTGCAAAGAATGTGAGATCCAATGGCATTCTGAACCTTACT CTCTTAAGGGACATTTCCCATTTTAGATTATTTTCAAATTTTACTAATTAAAGAGTTTTCTTTTTATTTAATCAATATAT TTAGAAATATAAATAGTGCAGACACCAATAAATATATCATTATTTCTCTTTTTATTTATCTCTTCTGATCACATTCATTC CTATTGGATGTCTGCACCATACAGATAAACATTTTTCTTTAAAAAACTATATAAATAAATATGTTTAACCTGGTTTTGAT ACATTTGATTAAAAGTTTTTTTTCTCATGTGTGGGGTCCGTGTTTTCCTTTCAGTGGGCCCATTTTCCACACATTCATTT CGGACTTATGCCTGACCATCAACCCGTGAAGAAAGCTAATGTCCGTCAGGTACTTGGAAACCCTAGCTACTTTCTTTTCT TTTCTTTTGGCAGCACATTAATGGAAAAGGTATACCCTTTTATTTCTAGGGTTTCTAATGTCAAATACTTGGTTGTGTAG GACGCAGAGGACGTGCTTTTGAAAGATGGGTTTTTCGCACCGGCAAATGTAGGTGTCTCTCCCTACTAG
CDS sequence (LotjaGi3g1v0207600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAGCTGCAGCAGCAGCAGCACCACCTCTCTCCCTCCGACCAGCTCTG CTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTTGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTG TGAGATGCGGCCATTGCTCCAACCTTCTCTCTGTGAACATGCGTGGGCCGCTTCTTCCTGCTGCAAATCAACTTCACCTT GCTCACTCCTTCTTCACTCCTCAAAATATTCTGGAGGAGATTAGAAATGGACCTTCAACAAACATGATGATGAATCAGCT GCCAAACCAAAATGACTTGGTCATGAGCACCATGCGAGGAGGGCATGAAGAAATCCCTAAGCCTCCACCAGCTAACAGAC CTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAAT CCTGATATCAGCCACAGAGAGGCTTTTAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTAT GCCTGACCATCAACCCGTGAAGAAAGCTAATGTCCGTCAGGACGCAGAGGACGTGCTTTTGAAAGATGGGTTTTTCGCAC CGGCAAATGTAGGTGTCTCTCCCTACTAG
Protein sequence (LotjaGi3g1v0207600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASSTSFSPDQLQQQQHHLSPSDQLCYVHCNFCDTVLAVVSVPCTSLFKTVTVRCGHCSNLLSVNMRGPLLPAANQLHL AHSFFTPQNILEEIRNGPSTNMMMNQLPNQNDLVMSTMRGGHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGN PDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDAEDVLLKDGFFAPANVGVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 1.6E-103 | – | |
| PANTHER | 1 | 221 | 221 | 1.6E-103 | ||
| Pfam | 22 | 186 | 165 | 2.2E-70 | ||
| MobiDBLite | 121 | 140 | 20 | - | – | |
| SUPERFAMILY | 131 | 180 | 50 | 7.85E-8 | ||
| Gene3D | 136 | 205 | 70 | 3.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi3g1v0207600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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