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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0210200 |
| Transcript ID | LotjaGi3g1v0210200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clathrin light chain; TAIR: AT3G51890.1 Clathrin light chain protein; Swiss-Prot: sp|F4J5M9|CLC3_ARATH Clathrin light chain 3; TrEMBL-Plants: tr|W8E3Q4|W8E3Q4_LOTJA Clathrin light chain; Found in the gene: LotjaGi3g1v0210200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31309967..31313184) extracted from Lotus japonicus Gifu genome v1.2.
GCAGCATGTGAATTGTGAACATTCCATCAAGGTAGTGAGTGGTGGGACAGTGAAGCACAGTATAGTGCTGTCCTAAACCA CAAAGAAATATCGAAATCATTCTACTGTACACTCAGCTCTACATTATTATACCCAAACTTGTCACTACCCTATTGGCCAG TCTTAAATATTTCACTCCACCTTAGACGAATCTACGAACAGTAATAAAAACGGTGTAGGATTAAAAATACACTCGACCGC ATTTCCTGAAAACCCCTCCTTCATTAAACACGCCATTCGAATTCCAAACGCCAACTCACCTCACCGCGATCGCCGGGAGA TTACACAGCCATGTCATCCTTCGGCAGCTCCGGTCAGCCGTTCGAAGACGACGGAGTCTTCCTCGGCTACGATCCCCGAC TCCAGTCACAGCGCTTTGACTCGTTCTCCAACTTCGACGCCGACTCGGTCAAGGACTCGGCCGGTGACGATGCGTTCTCG TCTCAGGCGGTGCCGGAGACTCCTTCCCCGCCGCCGATCTACTCTGCAGGTGCGGGATTCGCCCCGTACTCACCAGAGCA GAACGGGGAGGGCGCTGGTGGAGGCTTCGTTGCTTCCGATGGCCCGATCTTGCCACCGCCGGCGGATTTCGCGCCGGAAG AGGGGTTTGCCTTGAGGGAGTGGCGAAGGTAAGACCGTGGTGATCACTGTTGTTTATTTGTTTGCTTGTGAGTTTACGAT TACGATGGTGGTGTGATTTTGATGCAGGGAGAACGCGATTCGATTGGAGGAGAAGGAGAAGAAGGAGAATGAGACGCGGT TGCAGATCTTAGAGGAAGCTGATGAGTACAAAATTGGGTTTTACAGGAAGCGTGAGGTTAATGTTGAGAACACCAAAGCT TCTAACAGGGAAAGAGAGAAGGTAATTTCAATGCACAGTTTCACTTTTCTGATTGAATCTTCTGAGTTTCTATGGAGTTT TTTGTGATTCTGCTAGATGAATTTAATTATTTTGAACCGATGGCGTAAGTTGCAGTGCTTTCTATCTTAGTATTGAAATT GGGTACTTATATGTATATATCTTAGTTAAGGGCTTAAGGTCATAATCCTACACAAATAGTGCTACTATTCATGAGAAAAG GAACAAGAATGTGATAAATAAATTCAGTAGATCAACCACATTAGTGACAGCATTAAAATACTTCTCTGTGTAAAAACTAA AAAGAGATAGGAGCAATCTGAATGGTAAAGCATTCATTTTTCGCTAAACCTTGCCGGCACAGAAGAAGATAGATTTTTGC ACGCATAAATTATAGCACAAGTAGCTTAAGATTGACCAGCAGAAATATATTAAGATTGTATTGTGTTTCATGGTTGTTTT AATACTGTTGTATTGCGCATAAGGCAAGTAGAACACAAATACAAGCATCTGATATAGTTTACCCTATTTGGAAGAGCTTA TTTGAGTTTATCTAATAACAAATGCTTATGCATGTGTTTCAGAGTGCTTATGTAAATAGCTTATGACCTACATATTAGTT GTTTTGAGCTTATTTTCCTAAGTTCTTCAAATTAACTGATGAATAAGCGCTTATTCCTACATATAACCAATTTTGAGCTT ATTTCAATACGCTTCTCAAATAACCTTATGAAAAAGAACACTTAATGTTGAAAGCGTTACCCAAATGCACCTTTAGTCAA AGTGTTGATGTATTAAGCTCAATCCTTACTCCAAGTATCATGTTTTGTTATTCAACGTGGGTTTTTGGTTCAAGCCTAGG CAGGTCCAGGTCATTTCTCTACTGACGTTTGGTTGAAGTTACAATATCACCAACTCTAGCTTGTAACAAAGATTCACAAG ATTGTAGATATACAAATCTAAATCTTGCTAGAATTTGAACCAATAGAAAGATACTTATATTAAGTATTAACTATACCAAG ATTTAGATTCACAATAGAAGCATCTTTCTATTTGTTTGTATTCTGGGATACTCTGTTGTACTGATAGTATCTTCTATTGT TTTGTCCTGTGTCACTATTTCTGGTTTGGCCTTTTTATAATAACAGGAACATTTTTCTCTTCCGCAGTTCCACCCTTCTT GTTTCTTAAAGTATTTCAGGTGGAGCTTGGAATAACTATCTCAACTATAAATGACTGAAACTAAATATTTTGACTACGTC AAGCAATAATTGTATTAGGATTTTGTTTGTGAACTCTTAAGCCATCGTGTTAAATATATTACTCACTGTGTGGCAGCTAT TTTTGGCAAGCGGGGAGAAGTTCCATGCCGAAGCTGACAAAAACTACTGGAAGGCAATTGGTGAACTGATACCTCATGAA GTGCCTGCTATACAGAAAAGAGGGAAAAAGGACAAAGAGAAAAAGCCTTCCATCATTGTAATACAGGGGCCAAAGCCAGG GAAACCTACTGACCTTTCAAGAATGCGCCAGATATTACTGAAGCTCAAGCATAACCCCCCTCCACATATGAAGCCCAAGC CTCCTCCATCTTCAGAAACCAAAAAGGATGCTAAAACTGGACCTCCTGATGTAGCTGGTTCAAGTACTACACCTCCCAAG GCTGTGGCTGTGGCTACTTCAGAGGCGGTTGCTGTGGCTTGAACTTGGTGCTGCCTATTTGTTGAATTCTACATGTGAAA ATTAGGTTCTCAAGTTTGTGATGGCTTTAAGTTTGTAAGCATCTTATTGTAGTTCTAAGTAGCAGTACTTTATATAGAAA AGGCCTGTATTGGTTTTGGTTGCTTAGTGCATTGGTATATTCTCCTCCTCAAAACTTAATTTTGGCTACTATGTCCTGTT TGTGGCCTATCTAGATTTCTACTGTACATATTTTTATTAATAGCCTTGTCCAAAGTTCTATTTTGGAATCATATTTTCAA ACTAATAGTGGTTTTAATAGACGAATACATCTCTGTTAGTATTGTTAAATTTAGCCAGTTAATTATAAGGCAGGTTAGTC AGTTTGTTTCCTGATATGCTGTATGCAGTTATTCAACACTGCTTGTATATATACTAAAACACACATGAATGAGGATCATA ATACATTTTGCAATCACATTCAACTCGTTTTATGGTATCAGAGCAGAAAAATCTGCTCTGCATGCTCAACCGAATTTCCT ACTGAATTTTCCCCTAAATCGAGATTTGTTCTACACAGTGATCTTCGATTCTTGTTAATCAATTCTCTTCTTCTTTGATC TGATTCTTCTTTGATTAG
CDS sequence (LotjaGi3g1v0210200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCTTCGGCAGCTCCGGTCAGCCGTTCGAAGACGACGGAGTCTTCCTCGGCTACGATCCCCGACTCCAGTCACA GCGCTTTGACTCGTTCTCCAACTTCGACGCCGACTCGGTCAAGGACTCGGCCGGTGACGATGCGTTCTCGTCTCAGGCGG TGCCGGAGACTCCTTCCCCGCCGCCGATCTACTCTGCAGGTGCGGGATTCGCCCCGTACTCACCAGAGCAGAACGGGGAG GGCGCTGGTGGAGGCTTCGTTGCTTCCGATGGCCCGATCTTGCCACCGCCGGCGGATTTCGCGCCGGAAGAGGGGTTTGC CTTGAGGGAGTGGCGAAGGGAGAACGCGATTCGATTGGAGGAGAAGGAGAAGAAGGAGAATGAGACGCGGTTGCAGATCT TAGAGGAAGCTGATGAGTACAAAATTGGGTTTTACAGGAAGCGTGAGGTTAATGTTGAGAACACCAAAGCTTCTAACAGG GAAAGAGAGAAGCTATTTTTGGCAAGCGGGGAGAAGTTCCATGCCGAAGCTGACAAAAACTACTGGAAGGCAATTGGTGA ACTGATACCTCATGAAGTGCCTGCTATACAGAAAAGAGGGAAAAAGGACAAAGAGAAAAAGCCTTCCATCATTGTAATAC AGGGGCCAAAGCCAGGGAAACCTACTGACCTTTCAAGAATGCGCCAGATATTACTGAAGCTCAAGCATAACCCCCCTCCA CATATGAAGCCCAAGCCTCCTCCATCTTCAGAAACCAAAAAGGATGCTAAAACTGGACCTCCTGATGTAGCTGGTTCAAG TACTACACCTCCCAAGGCTGTGGCTGTGGCTACTTCAGAGGCGGTTGCTGTGGCTTGA
Protein sequence (LotjaGi3g1v0210200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSFGSSGQPFEDDGVFLGYDPRLQSQRFDSFSNFDADSVKDSAGDDAFSSQAVPETPSPPPIYSAGAGFAPYSPEQNGE GAGGGFVASDGPILPPPADFAPEEGFALREWRRENAIRLEEKEKKENETRLQILEEADEYKIGFYRKREVNVENTKASNR EREKLFLASGEKFHAEADKNYWKAIGELIPHEVPAIQKRGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPP HMKPKPPPSSETKKDAKTGPPDVAGSSTTPPKAVAVATSEAVAVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 285 | 285 | 1.4E-130 | – | |
| PANTHER | 1 | 285 | 285 | 1.4E-130 | ||
| MobiDBLite | 35 | 101 | 67 | - | – | |
| Pfam | 102 | 238 | 137 | 4.9E-11 | ||
| Coils | 108 | 139 | 32 | - | – | |
| MobiDBLite | 192 | 285 | 94 | - | – | |
| MobiDBLite | 194 | 210 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin coat of trans-Golgi network vesicle | A clathrin coat found on a vesicle of the trans-Golgi network. | ||
| Cellular component | Clathrin coat of coated pit | The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex. |
Expression pattern of LotjaGi3g1v0210200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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