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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0211000 |
| Transcript ID | LotjaGi3g1v0211000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT5G01220.1 sulfoquinovosyldiacylglycerol 2; Swiss-Prot: sp|Q8S4F6|SQD2_ARATH Sulfoquinovosyl transferase SQD2; TrEMBL-Plants: tr|A0A151UBU9|A0A151UBU9_CAJCA Putative glycosyltransferase MJ1607; Found in the gene: LotjaGi3g1v0211000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31571008..31574091) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTTGTGTTTGTAATAGGTATTGGTTGTGACAACACATGAAGGAGTGCCCGCAGAATTTTATGGAGCCAAATTAATTG GATCCCGCAGGTTGCTAGCTGTATTCTGTTTAATTTGTTCGCTCATTTTCTCTTCATCTTGGCTGTTTTCTAAAGGAATT GTTTGTGAACCTTACACTTGCCATCTTGGAACTTCATCTTCAGAATAAAAACACTTTTGAGATCATAAATCATAAGTTAC TTCTGTTAAGACTTAAGAGTACTAAAACTCCTTTTAAGATTTTTAACTTTCTTAAAAGAACTTACTTAATTATCTTATTA TTTTTTAAATATGTTTTGAAACACATTTTGTTAAGAATAGCACAAACAAAAGGGTACTTATGATATTCGGTTTTCATCAT TTTATAAATTTTTACTTCTTCATATCAAATTAGATGTTAGAGTCAGTCCTAGTTGGATGCTGATATGTTCCTTAAAGTTA TAGTTGCTGCCTCTGTCATTGCTTCATACTAATGATTTTCATTTCAAAAAAAAAATTGAAAAATGCAGCTTCCCTTTACC CTGGTATCAGAATGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCAGTTGCCCAGTTTAAGCCTGACATAA TACACGCATCATCGCCAGGCATAATGGTTGGTTTGCAATTCCTGTATCTCCTTCTTAGTGCATGCTTTAGAAATTTTTCT ATAATTTATTTTAAAGTCAAAATCAATTTTATGAAGAACCTTCTTTCAGTAGCTTCTGGGGCTAGAATTGATTCTGATGA AAGAAATGTTAATCTAACCATACTATTAACTCCTGGATTGTATATCTAACACTGGCTAAATTTCAGGTTTTTGGTGCTCT TATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCATACTCATGTACCAGTGTAAGTACTATTGACTAAGA TTCCAGAATTTTTAATGTATTTCACATTTGCAAAACTGTCATGTCTGGGCTTCTTGAGATTAAGTATATATTTGGACTAC TGTTGAAATCATCGCTGATTCACGTTTGACTCAACGTGTCAAAATATTGCTTCTCCATTGAAACCATCACTGATTCACCT TTGAGTCAATCACGTGTCAAAATATTGCTTCTCTGCTGATACTTTACGATGTGTTTTTTCCTGTTTGCGTTCACTCAAAC GCTAATGGGCACTGAATCAAGTATTGCTTAAGGTTGATCTCTTTTTTTTTTGGTTCAGATACATCCCAAGATACACCTTT AGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAGTATGTATGCTCTATATAGCTGTCTTTGTCCAACTTGGAATGCTAT TTTTTTTTTGGGAAAATAACATGAATTTGCTGTTTTATATAGAGTTTCTGCATAGAGCAGCTGACCTAACCCTGGTGCCA TCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGGTAAACATAAACTCCTCTTATCAAGTGCCCTTTC ACCTTTGCTCAATTGATAACAGCAGATTAACATAAGCATTTCGATAAACACATTTTTTGTCATGTTAAACCTAAAGTCAA AGTAGTTTTTCCTCAATCCATAAAGAGAGTTATGTTCACTTTTTGTCTCGAAGTAAATGCTAACGTCTTTTACACTGGTG TCAACGGTATCCAAACATACCTGTTTGTCAATCTAGCAATTTTTTGTCTGACTTGTTTTTTCCTGATGATGTCCAGCTAA CAAGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAATGAGATCAAGAT TGAGGTAAGGATACCGATGTTCTGTCATTTCATTGTCTGCAAGTTTCATAGGTCTTTTTATCTTATTCTTGATCTTGTGT CATGCAGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGTTTAGATTTTCTC AAAAGGTAGATAACATCTTGAAAATTTTCAAAACATGAACGTATTGCGTGCAAGATTTACAGTCCATCTTGAAAATAAAC TGCAAGAGTGTTGAGAAGTTCTTTGTTGAGAATATTGATGTATTATAGCTGAAAGATGGTTAAACTTTTTCGGGATATGG TTTCTAGCAATTCATTTTGAAGTACCTCTAACTTCCAGATACTACTTCAATGCTTCATACCATAGCATATAATAGTATAT CTAGCATGTAAACTTGAAAGTCTGTAACCTGACATTTGAAACACATGATTTGGATTTGGCAGTCTCATGGATAGGCTTCC TGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGTGAGAATGACTTACTCCGCGGTCAGGATCCTCTCATGTGT AAATTTCACATGACAGTGCTGTGTTGAAACTGTGTCTATCTCTCTTTTAATAGCAACTAAATAGGTGGGATCCTCTGAAT ATTTTTAAAGAGAGATAGACTGAGTTTCACATGATATCATTATATGACATGAGAGGATCCTAATCCACAGATTACCTTCT GCCACCTTTTATTAAAATTTATTAACTGACACAGGGAGGAGCTGGAGAAATTGTTTGAAGGCATGCCTGCAGTATTCACA GGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTCATGCCTTCAGAGTCAGAGACACT TGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGCCGGTGGAATCCCGGACATCATCC CTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACTGCTTGAGCAAGTTAGTGCCTCTG CTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAAAAGTATGATTGGAGGGCCGCCAC GAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGTTGAGACCATTCC AGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG
CDS sequence (LotjaGi3g1v0211000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCATACTCATGTACCAGTATA CATCCCAAGATACACCTTTAGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAAGTTTCTGCATAGAGCAGCTGACCTAA CCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGCTAACAAGATTCGTCTTTGGAAC AAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAATGAGATCAAGATTGAGCAATGGTGAACCTGA GAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGGCTTCCTGAAGCAAGAA TTGCTTTTATTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAATTGTTTGAAGGCATGCCTGCAGTATTCACAGGAATG CTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTCATGCCTTCAGAGTCAGAGACACTTGGGCT AGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGCCGGTGGAATCCCGGACATCATCCCTGAAG ACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACTGCTTGAGCAAGTTAGTGCCTCTGCTGCAA GACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAAAAGTATGATTGGAGGGCCGCCACGAAGAA GATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGTTGAGACCATTCCAGTGGC TAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG
Protein sequence (LotjaGi3g1v0211000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWLVIKFLHRAADLTLVPSAAIGRDLEAAKVTAANKIRLWN KGVDSESFHPRFKSPEMRSRLSNGEPEKPLIVHVGRIGVEKSLDFLKRLPEARIAFIGDGPYREELEKLFEGMPAVFTGM LGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLVPLLQ DKELRETMGEAARLEMEKYDWRAATKKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRVFPSPEVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| CDD | 1 | 271 | 271 | 3.68175E-106 | – | |
| PANTHER | 1 | 304 | 304 | 1.7E-200 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 304 | 304 | 1.7E-200 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| SUPERFAMILY | 4 | 269 | 266 | 3.93E-61 | – | |
| Pfam | 4 | 86 | 83 | 9.3E-9 | ||
| Gene3D | 5 | 268 | 264 | 2.8E-50 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 305 | 286 | - | – | |
| Gene3D | 83 | 256 | 174 | 2.8E-50 | – | |
| Pfam | 107 | 254 | 148 | 1.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0211000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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