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LotjaGi3g1v0216000.1

Overview

Field Value
Gene ID LotjaGi3g1v0216000
Transcript ID LotjaGi3g1v0216000.1
Lotus japonicus genome version Gifu v1.2
Description Ataxin-3 like; TAIR: AT3G54130.1 Josephin family protein; Swiss-Prot: sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog; TrEMBL-Plants: tr|I3SDA2|I3SDA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0216000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:32423680..32430077) extracted from Lotus japonicus Gifu genome v1.2.

CAGAAGGATAGTTCCTCAAGTGGAACACGTGACAACATATGACAACGACAGTTAGCATTAGCATATCTTCCACTCCACCC AAATTCCACAACAATAATGAATACAATTTTCCATTTTCCATTGAATGAAATTCAATCCCTTCCTTTTTCAATATAAATCC GATCCCAAATCGAAAACAATAACAAACGAACGAACACTTCAAATAAACACTCTGTTCTTATTCTTGTCTTGTTTTTTAGG GTTTAGTTGTTGTTGTTGATGTTGTTTCTGATCGAATTGAATTGAATTGAACATTATCATGATGATGGAAGGAGCGAGCA ATGGAGGCATGTTGTACCACGAGGTACAAGAGTCCAAGCTCTGCGCTGTGCATTGTGTCAACACCGTGCTTCAAGGTCCC TTCTTCTCTGAATTCGACTTGGCTGCTCTCGCTTCCGATCTCGATTGCAAGGAGCGTCAGATGATGATGCTCCCTTCCCT TGCCTCCGGTGATTTTCTATCTCATGATTCCCATAATGTCTCCCTTGACGGTGATTTCAGTATCCAGGTCCATCCCTTCT CCTTCAATTATATCAATTCATCGTTTAATTTTTTATTGACGACTGTTTTTAATTGTTATTGTTATTGTTTTTGAGGATTT TATGTGGGTTACTTGGTTCTATTGTGAAAATGTGGTTTGATTTTGCTGGAGTTTAATGCTGTGTAGTTCAGAATTGGTTG TGGGTTGCAACTTGCAAATGCGGTTTGACTCGTTTAATATTTTTGATTGTTTATTATGAGATGTTTCAATGATTAGAGAG GAAGTTAGAGTAGCTACCATCTTAGTAGAGATGGAGGAATCTCGTGTTTAGGTATGTGTGGAGATTATACGTAGAAGCAC TTGTTAGGAGAAGAAGGGTTTTAAATTGCGGTTGCGGATGGCAATTGTGGCTGCAACGTAAAGGGACTTGGAGTCTCCCA TCGCAACCGCCATTGCGCGCGCATTTTTTAATTAAAGTTTCCACACTCAGATAATTACTGCTGGGACATTGTTTAAACCG GGAGCCCACAACTTTTCACTAGACCTCAAATTTTGGGTCCACATTAATGATAAATAGGATACACGGAAGTTTTGTTCATG TCGGAACTGCAATCCCATTTCGAGCACGCGGTATATACATTTAAGTGTGTCCGGACCCAATTTCTCTTTTGGCTCGCATC CCTACTCAGTGTTGTAGATGTCGGAACTGCAATCCCATTCAATATTTTTTGATTGTTTATTATTAGTTGTTTCAATGATT AGAGTGAAAATTAGAGTGGCTACCTATCTTAAAAAATATGGTGGAATCTCGTGCCTCGATATGTGTGGAGAAAAATATGT AGAAGCACCTGTTAGGAGCAGGGTTTTAAATTGCGGCGGCACGCAAAGGGATTTGGAGTCTCATCGACTGCAATTGCGTG CACCAACCCGCATTTGTCAGCAATTCTGCAATGCAACTTGAATCGCAGCCGCAATTTAAAACCCTAGTTAGGTGGATCAA TGATAGTCCAATAGTTAGAGATGGGTGGACACTGAGAAAAGTTATAGGCCGAGATTAAGAAAGATTAGTGGTAAACTGTC TATCTTCACCCTTAATACACGAAGAGCATAAGATGTCGAGACCCATTTAGTGGGAAAAGGCTTGGTGGTGGTTACAAGCT GGTTGTCTATTGAAGGAATTCTTTGTTTGCATGCATGAACACAAATGGGGGACAAGTAATATATTTTTCAGTTTTTTTTA ATTAAAATTTTCACACTCAGATAATTACTGCTTGGACATTGTTTCAACTGGGAGTCCACAACTTTTCACTAGACGTCAAA TTTGGGGTCCACATTAATGATAAATAAGATACACAGAAGTTTTGTACATGTCGGAACTGCAATCCCATTTCGAGCACGCA GTATATACATTTAAGTCTGTCCGGACCCAATTTATTTTTTGGCTCGCATCCCTACTCAGCGTTGTAGACGTCGGTTTATA CTTGTAGGATTGAGACTGTACTCGCAGGATTTTGATCTTACGAGTTTTTCTTCCATGCGCATGCCTGTTTCTTTTTGGAT CTCTGTAGGATCGTCAGGGAAAATTGCAAGGCTGTGCAATCAGTGATTTTTCCGATTTCTTTACTTGTGACGCTGAGGCT GCGGTGGTTATTTCAAGGCTGTGCAATCAGTGATTTTTCCGATTTCTTGACTTGTGACGCTGTGGGCTGCGATGGTTCAG GCTTTGTAGCATGGGTTGAAGAAACCCACCATTCTTTCCCAAATTCAACCTGATCTTGCTTCTCCTCTCATACCACTTAC TCAACCCCCTCTCCCTATCCTTGTGCAAAATATGTCAGACCCAATTTCTCACTATCACATTCCCACATCGCTGTCTCCCC CTTTGTTGCCTTAAGTTTCCATGCTTGTTCCCGGTCTCTTAATCTGAGATCTGAAGATTTTTTTCTGCTTTGGTCAGCTC CAGAATCATGGTCTTGGCCTCTTGGGTCTGTGGAGCTGGTTCTCATTCTCTTATGGGGCTGCTTCTAATTCTTCGCTGTT GTGAAAATATCTAAAAATATGTGATTTAATTTAATTTGAGTTTTATTGAATCTTATTTCTCGGTTGTCTCTTTGTTATGA ATTTTTTTCGAAAATGTTTGTTTTAACTTAATTAAATGAAAATTACCGTTTGTTGTAATTTGAATATAATTTTTCTTATA CACGTTATATATGTTTATGGGTGTGTGTGCACGATTTTTGTAATTTAGGTAGGATCTTATGATTTATGTCATGATACTCC GACTTGAGTGTTTTCTTCCCTCTTCTAATCCTAGGTAGGATATTTATTTTGATGTTGCCCCTATGTACAAAATAATTGTT GTAATTTTATATCTCCAGGCTCTAGTATATAACTATATAAATAGTACAGTAAATAGGTATAATTTTAACAATTTTTATCC TGATATCATAATGCTCTTATGACCTGGCATATTGTATTGAGAAAGACATTTATGTTTGAGAGACTGTGGTATTAACTGCT GTCAAAAGTCTAAGCATAGAAGGGGTGTAAGGTAGTCTGATAAACACTGCAGCATGTTCTATATTTGTCATTCTTGTAGG GACTAGGGATTACAATGGGTTGGCTCTGATAGGGTACCATATATCCACGTGGATAGCAATTTTAATAAGGACTGCACCCG TATATGCTTTGTACTTATACTCAGGACCAATTGCCTGTATTTTGTTAATTTAAATATTTCCTCCTTTGATGCATTTGTTA GACAAACTAGAAAACATGAATGCTATAGTATAATATTAACAATAATGCTGGAAAAAAATGATGTATTGATTAAAAGTATA AGAACTGAGTTGAAAAAATATTCCAAGATGATTAAATTCCTAATAATAATTACGAAAGTTTACAAACAAAACCATCTAGT TTAATTAAAAATGTATTAAAAATATGTTAAATGCTAATTATAAAATATAATAAATATAAAGTGTTGACCCTTTCCTGAAC CAGAACCGGGGGGAGAGGAAAGAAAAGGGGATCAAAATTTCCCATCAATAAAGTGAGGGCTTCGGGGGTATGAGTATATG TATGGGTATGTTGCCTAACCCTTTAGATAGGTAAATACCTACCCATTGTGGCATTTTTTTAAGGTACCACTGGGTCTGGG TCTCACTGCCATTCCTACATTATTGTGATCTCCCATTCCCCATTTCTTGCATCCTTGAGTTGCTTAATCTGTAGGGTTTG ATCCCTTCAAAAATGTTTGTCCCTCCTTTTTTATTGAATTTGAAGTTTTGATACTTGTATGCAGTTGGATTTTTTGATAA TCTGCTCAGAACAGAATCCTTTGCTGTTAGCATAATTGATAATGGCTATGTTTGGCATGCCATTTCAGCTAGCTTATAGC TTATTTGACTAGCTTAAAGCTTATTTGACTAGCTTAAAAGCTCTTCAAAAGTGTTTGGTGAAGGAGCTTATTTTAGTAGC TTAAAGCTTTAAGCTATAAGCTATCTCAGGTAGCTTATAGCTTAAAGCTTATAGCTTATTAAATTTATTCTCATTTTTAT CCTTATTATTTTATTAAAATTCTACCCTTACCCTTATATATTTATAAAAACACTAAACTTATTTTCCCCTCACACTTACG TATGCAGTTTCCGCCACCATTCCCGCCACACCGCTGCGCACCACAAGTATTATAAATATTATATTAATAAAAATAAATAA AAATAAATATTATATTTTTAAGATGATATATAACTGTAGCTAATAAAAATATTTAAAGTGATAATAATTTTAATATTAAT ATCATATTGGTATTAATGTGAAAATAAAGTAATGTAATATAAAAATAATTATACAAGTATGTCCTTTTATGTCATTTTAC AATTTCAGCTTGTTTAACAGCTAGTTCTACCAAACACTTTTGTTTCAATCACGTAGCTTTTCAGCTTTCAGCTATCAGCT TTCAGCTAGCTTTTCAGCTTTCAGCTATCAGCTTTCAGTTAGCTTATCAGCTTTCAGCTATCAGCTAGCTTATAAGCTTT CAGCTAGCTTTTCAGCTTTCAGCTAGCTTATCAGCTAAACATGCCAAACATAGCCAATGTCCGTTGTTTTAGATGCTGAA AACGTACCAGGCCAATTGAAGTGAGTCAATTACTTGTGAATTCTGCAATTTAGGGGAGGGGGCTTCTGATTTATGTTTGA AATGATATTGATCTTTTATCTTTTATCTTTTATTTACATGTAACATGCTTTAGCGCTTTATGCTTGTAAGGTCAAGCCTT GTATGTATGATTCTGTTTCTAGGAAATGAATTTTTATTAAAAGTAATTGGTTTCAGTTAGGTGAAATGTTTATTGTGCAT GCCAAATATTGGGCAGGCAACTTTGATACTTTTAAATTTTACAATACACTCAATTTTGGAAAGTCTTTTTTGTAGGTCTT ACAAAAGGCTCTGGAAGTGTGGGACCTGCAAGTTATCCCTCTTGACTCTCCTGTTGCCGAGCCTGCCCAGATCGATCCTG AGCTGGAAAATGCCTTCATCTGTCACTTGCAAGACCACTGGTTTTGTATCCGTAAAGTGAACGGGGAGTGGTATAATTTT GACAGCCTCTACGCAGCCCCACAGCACCTTTCCAAGTTCTACCTTGCAGCCTATCTTGACTCTCTGAAAGGTTTCGGATG GAGCATATTTCTGGTGAGAGGAAATTTTCCGAAAGAGTTCCCCATCTCCTCATCTGAAGCTTCTAATGGCTTCGGACAGT GGCTTTCACCTGAAGATGCTGAGCGGATAATTAAATCATGCAGCTCAGTACAGGCTCCTCAACGGGTGAATAATGAGCGC CAACAGCGTCAGGATCAGTTTCTGTCTCGCGAGGAAGCTGATATGTTTTCCGAGATGGAGGATGAGGATCTAAAGGCCGC GATAGCAGCTAGTCTGATGGATTCGGCCCCAGCTGTGACCAATGCTGAAGCCAGTTCTCCTCAAATTGGTGATCAAAGTA GTAAGCAAGGAGCAACTACTGTAGCTAGCCCTCTGAAGGATCAACACAACAAAACAGTGGAATCCATTGAAGCTGGTGTA GTTCTCAGTGATCAAAGCAACAAACATGGGGCGTCTATGGAAGCTGCTAGTTCTCTTCAAATTGATCAGAACAACCAAGA AGTGGCATCTACGGTAGGAGATAGCCCTCAAGATGAAAACAAGAATAAAGAAAATACCGTCTGAGAAAAGAGTCTGCTCC TCTATTTGCTCCTTATTTGTTTATTTGAGGACAATAATTTAATTCATACCGGTTTAGGTGGTCGAAACATACATCAGTGG CTTAATGTCATGGAACTGTGCAGTATACACATTCTCATTTCGATTGCATGATGTATAAACTGTAAGGAAAACCCTTCAGC ATTTCTTCTTGTTATGAATTATGATTATTGACGAGTTTTGGCAATTTTTTATCCTTCAGAGTTTCCATCTGATTGTGATG GCTACCTAGTTTTTGCACATGTTGGTATGTATAAGGAATTGCTGACTGTGTTCTTTGTCATGATCAAAATTTGATTTTCT TAAAATTTAAAGGAAAAACTCTGACGAGGGAAGAAAAAAAAAACAACCAACTAGAAAGCACTATACGACCATTGCACCAC ATACAAAAGAGACAAGGCAACCACAACCAAAATTTCTGTGGTTTGTAATGAAATAATGTTGTTTTCATTGATATCAACTT TCGGTTGGGGTGGGCAAAAAGTCTTCAGATTGAGGGAGGTGAATATTCCTGAATAGGTGCATGTATCATATATGTACCTC ACACCTAAAGTGTTTCGTTTTCTCTTAAATTTCTTTTGATAAAATAAAATGTGGAAAAGGGCAAAAAGACTAAAAGAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0216000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGATGGAAGGAGCGAGCAATGGAGGCATGTTGTACCACGAGGTACAAGAGTCCAAGCTCTGCGCTGTGCATTGTGT CAACACCGTGCTTCAAGGTCCCTTCTTCTCTGAATTCGACTTGGCTGCTCTCGCTTCCGATCTCGATTGCAAGGAGCGTC AGATGATGATGCTCCCTTCCCTTGCCTCCGGTGATTTTCTATCTCATGATTCCCATAATGTCTCCCTTGACGGTGATTTC AGTATCCAGGTCTTACAAAAGGCTCTGGAAGTGTGGGACCTGCAAGTTATCCCTCTTGACTCTCCTGTTGCCGAGCCTGC CCAGATCGATCCTGAGCTGGAAAATGCCTTCATCTGTCACTTGCAAGACCACTGGTTTTGTATCCGTAAAGTGAACGGGG AGTGGTATAATTTTGACAGCCTCTACGCAGCCCCACAGCACCTTTCCAAGTTCTACCTTGCAGCCTATCTTGACTCTCTG AAAGGTTTCGGATGGAGCATATTTCTGGTGAGAGGAAATTTTCCGAAAGAGTTCCCCATCTCCTCATCTGAAGCTTCTAA TGGCTTCGGACAGTGGCTTTCACCTGAAGATGCTGAGCGGATAATTAAATCATGCAGCTCAGTACAGGCTCCTCAACGGG TGAATAATGAGCGCCAACAGCGTCAGGATCAGTTTCTGTCTCGCGAGGAAGCTGATATGTTTTCCGAGATGGAGGATGAG GATCTAAAGGCCGCGATAGCAGCTAGTCTGATGGATTCGGCCCCAGCTGTGACCAATGCTGAAGCCAGTTCTCCTCAAAT TGGTGATCAAAGTAGTAAGCAAGGAGCAACTACTGTAGCTAGCCCTCTGAAGGATCAACACAACAAAACAGTGGAATCCA TTGAAGCTGGTGTAGTTCTCAGTGATCAAAGCAACAAACATGGGGCGTCTATGGAAGCTGCTAGTTCTCTTCAAATTGAT CAGAACAACCAAGAAGTGGCATCTACGGTAGGAGATAGCCCTCAAGATGAAAACAAGAATAAAGAAAATACCGTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0216000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMMEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMMLPSLASGDFLSHDSHNVSLDGDF SIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSL KGFGWSIFLVRGNFPKEFPISSSEASNGFGQWLSPEDAERIIKSCSSVQAPQRVNNERQQRQDQFLSREEADMFSEMEDE DLKAAIAASLMDSAPAVTNAEASSPQIGDQSSKQGATTVASPLKDQHNKTVESIEAGVVLSDQSNKHGASMEAASSLQID QNNQEVASTVGDSPQDENKNKENTV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14159
8 320 313 1.5E-130
IPR033865
ProSiteProfiles
PS50957
9 185 177 23.53
IPR006155
PRINTS
PR01233
13 36 24 1.1E-25 –
SMART
SM01246
16 173 158 2.2E-78
IPR006155
Pfam
PF02099
17 171 155 8.7E-47
IPR006155
Gene3D
G3DSA:3.90.70.40
21 174 154 7.6E-57 –
Gene3D
G3DSA:1.10.287.10
35 75 41 7.6E-57 –
PRINTS
PR01233
71 90 20 1.1E-25 –
PRINTS
PR01233
111 130 20 1.1E-25 –
PRINTS
PR01233
132 152 21 1.1E-25 –
PRINTS
PR01233
156 175 20 1.1E-25 –
MobiDBLite
mobidb-lite
257 287 31 - –
MobiDBLite
mobidb-lite
257 345 89 - –
MobiDBLite
mobidb-lite
297 334 38 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004843
Molecular function Thiol-dependent ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0216000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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