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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006155
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.831s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2245110.1
n.a. PREDICTED: josephin-like protein-like [Glycine max] gi|356498937|ref|XP_003518302.1| chr2 33052833 33054105 +
4 domain predictions
2 GO terms
Lj3g3v1603950.1
n.a. PREDICTED: ataxin-3 homolog [Cicer arietinum] gi|502170894|ref|XP_004514941.1| chr3 20356918 20362891 +
4 domain predictions
2 GO terms
LotjaGi1g1v0122700.1
n.a. Josephin-like protein; TAIR: AT2G29640.1 JOSEPHIN-like protein; Swiss-Prot: sp|O82391|JOSL_ARATH Josephin-like protein; TrEMBL-Plants: tr|A0A151U0W8|A0A151U0W8_CAJCA Josephin-like protein; Found in the gene: LotjaGi1g1v0122700 LjG1.1_chr1 19465650 19467863 -
4 domain predictions
2 GO terms
LotjaGi1g1v0122700.2
n.a. Josephin-like protein; TAIR: AT2G29640.1 JOSEPHIN-like protein; Swiss-Prot: sp|O82391|JOSL_ARATH Josephin-like protein; TrEMBL-Plants: tr|A0A151U0W8|A0A151U0W8_CAJCA Josephin-like protein; Found in the gene: LotjaGi1g1v0122700 LjG1.1_chr1 19466347 19467908 -
4 domain predictions
2 GO terms
LotjaGi3g1v0216000.1
n.a. Ataxin-3 like; TAIR: AT3G54130.1 Josephin family protein; Swiss-Prot: sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog; TrEMBL-Plants: tr|I3SDA2|I3SDA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0216000 LjG1.1_chr3 32423680 32430077 +
4 domain predictions
2 GO terms
LotjaGi4g1v0413500.1
n.a. Self-incompatibility family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072TUV9|A0A072TUV9_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi4g1v0413500 LjG1.1_chr4 78931682 78932290 +
2 domain predictions
2 GO terms