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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0219000 |
| Transcript ID | LotjaGi3g1v0219000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol:ceramide inositolphosphotransferase; TAIR: AT3G54020.1 Inositol phosphorylceramide synthase 1; Swiss-Prot: sp|Q9M325|IPCS1_ARATH Phosphatidylinositol:ceramide inositolphosphotransferase 1; TrEMBL-Plants: tr|A0A0B2RGX9|A0A0B2RGX9_GLYSO Phosphatidylcholine:ceramide cholinephosphotransferase 1; Found in the gene: LotjaGi3g1v0219000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32976014..32979637) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCTTTACATCGGTCGTGAGGCTTCAAAGGTTTTTGTTTTGCTTTTTGTCTCTTTATTCATTTGTGTATTGCTCTT TTTTTGTGTATGTTTGGTGTTTGATGTTTGAATATCTGTTTGTGTAGCTATGGAAGAGAATTTGCTCAGAGACAACTACT GAGCTCAACCTCCTTGCTGAGAATTGGAAGTACCTTCTCGCTGGTCTTATTGGTCAGGTTTGTTCTATTTTTATCAACCT CGAACGTTATTCTTCAAGTTGTGGTTTCCCTTTTGTGTAAAGGATGCTAAGGTTCTTTTTCTTTTCCTTTGGTGACTAGT AGAAAATTTCTGAAAGCGTTTTTTGGCTGTGAACTTTACTTGCATGCTACAAAAAGTTCAACTTTTCTTCTTCATGTTAT TGTTGTTGGGGAGGTTATTTGAAATTTTGCATATATATTTTTGGTGTTTTATGGGTAGGTAAGAACTAAGAACTAAGAAC AAGGTTTATAGTTCTATTATTTGATTTAATCACTGAACTTTATTTTGTCAGTGCTTATATCAAGTATCAGGGTTGATGGC TTGGTGTGTTGATGAGGGAATTAAATGATTTTTTTGTCATACTCTTCAGCTATGATGATTTGGCATTTGGTGATGCATGC TTTAGAATTGGGATTTCCAATTATTTGTTCATCTGAAATACAAGTTTGTTCTCAATTCTATATGGAATTCTGGGCTCTCT GCAGGTTATCTAATGTTTCATTTTCCTCATTAGGAAAGGCTTACAGTTTGCAGCAAGTTGTTGAGTGAAAATATTGAGGA CAAATGTTTACTGAATAAAGAGAAAGAAGTTAGAATGGCCAATTTTTTTAAAATTGTATCTGTTTGTGTGTTTTCTATCC TTGTCTTTGTTGTGCATAAAGTGTAACTGGGTAAACCATTGGTGTACTTTGTTTATTGACATATTTTTATTTTGTTTTTC TATTTGATGTCTAAATTTAAAACTGTTTCCCTACAGTATATACACGGTTTGGCTGCCCGAGGGGTTCATTATTTTCATAG GCCGGGTCCTATTCTGCAAGATGTTGGATTCTTCCTTCTTCCGGTTCGTGATTGTCATTCCATAATTTTTTTTCGATCAC CCTCAAAAAATCTATGCATAAAAATGATAAAAAGGTCTTTAACTCTTTATAATACTAATATTATTCTCGATGCTGCTACA GGAGCTTGGGCAAGACAAAGCTTACATCAGTGAAACACTGTTCACCTCTATCTTTGTGTCCTTTGCCTTGGTAAGAAACT CCTCCCCCTCTTTCTCCGTTTTCATATATTTTGCATAGCTATGGCATCACAAAACATTAAGACAGATGCTATATTCTACT GCGAATTACCATTTTAGTTACTGGCGTGACAAATCTCCTAGGTAAATATGGCTTGATCATCAATGTGTGCCCCAAGTTAT CTGATACTCGGGTGTGTCCTTCAAGTCAAAGCTATAAACAGTCATAGCCATATATATTTTGTCGTCATGGCTTTGTGAAT TTTAGAAGTTACAAATGAAGTTTTTCAAGGTGTATGTAGGTACTGACTGACTGTTGAGAACTACTAGTAAAAGAAAAAAA AATAAAAGAATGATAAATGAAATAAAAGCAAATATGATTCTGGTTTGAAGTTTTCTTATAGTAGTTGAGTACTGATGTTG GAGAATGATTATTTGCTCTCACTTCTATGGATTTATTCCTTTTTTATCTTTGCTTGATACTCTTCTAGTGCAAGAGTTCA TGTAATCAAACTCAGTAAGTGTACCGTCCTTTCTATTTAAGTTGCTTATTTTCCCTTTTTCCTGTACCAATTTGATCGGT ATCATTTTTTTTGGTGACATTCTCATTTCAGCAAGTATTCTTTTTTTTTTTAATTCCTGTTGAAGTTTTATGATATATTC TTTGATATGTGCTTTTGCAGTGGACGTTTCATCCTTTCATATTGAAGAGCAGAAAGATCTATACAGTTCTAATATGGTGC AGGGTTCTCGCCTTCTTAGTTGTAAGTGTTGATTAAGCCATGTCATGTTCATTAAAGTATTGTTTAATCTTTTGCGAACC ATTGTTGAATAGATGGGTGCTTAGGGTAATGAATTCATGGATCAAGGTGAGTTGCCAGCATAAAATGCAGCCTGTAATGC GCACACGACTAATGTTGAATTGTTGATTACTTTGTAATGTCATTTTGCCCTGCTTCCTTTTTCATCTTGTATGACCAGCG CAGTATATTTCTGGCCATTTAATGTTTTAGATCAAGTACCTTTTTGGCATTTATAAATATGCAAATTTTCTTATTATGTC TAGCTATTGTGTATTTGTTTACTGCAGGCTTCTCAGTTTCTTCGTATAATGACATTTTATTCTACACAGCTTCCTGGTCC AAACTACCATTGCCGTGAGGTATAAATGTCTAAGAGTATGCTCTACTTTTCTTTATCAGTTTAAATTGCATGTGTGTAAT ATCTTTTAAATTTTTCCCATTTTGTTTATAATTTTACACTCTTAATTATCATGCAGGGTTCCAAACTTGCCACATTGCCT CGTCCAGATACTGTCCTTGAAGTTTTCGTGATTAATTGTTAGTACATGTTATTGTATTGCAGTTTTAGCTATGATGCTGT GATGATTGTTTTGGAATTTATTCAATTTTAATATTTTAATATGCAGTTCGGCGTGGTATCTTGTATGGATGCGGTGACTT GATATTTTCATCACATATGATCTTCACTCTTACTTTTGTGCGTACATATCAGAAATATGGCACTCGAAGGTAAAATTTAC TTATGGAACTCTTTTTGGAAGAATTTAGTTAGTCACTGACTATTGATATGGCCAAATAAGTCCTTATAAAGAGAACTGTT GAGCAACCTTCACCTCTGAGCTAACTTTTAGGGTAGAGGTAGACCTAACCTAAAAGTCACACACCCACGGTAACTTTTGT TTGGTCATGTCATTTTTTATGTTTGAATTTAAGTTTTGATTTATTTTGATTGTTGTTGAGCCACCAGATCCCTCAAGCAG CTAGGGTGGTTGCTTGCTATTATTCAGAGCCTTTTGATAATAGCATCTCGCAAACATTACACGGTTGACGTAGTTGTTGC CTGGTAAGGAGCATTCTTTGCCTTGTGATGGGGAAAACTGTGGTCTATGTTACTTGAGTTAATCTTTTGGTCCCTGGTTG GCAGGTACACTGTTAATTTGGTGGTGTTTTTTGTTGACAAGAAATTACCAGGTTAGCAAACTTGTGCAAACTTGCAATGT GCTATCGTCATTTACTTTAGCCGCTATTTGCTGTTGTTCTGACTGTTGTTCTCTGCAGAATTGCCGGACCGGTCAAATGC GGCTACAACCCTGCTACCATTGAGCACGAAAGACAAAGATGGAAAGATCAAAGAGGAGAACCACAAGCTATTGAATGGGA ATTCTGGAGACCCTGTGGATTGGGTATGGTGAATATGCTTGCCCTTTTTCCCTTGTTCCTTTTATGCAATGTCTTTGTCT GTGACATAACATGGTTATTTTGGCTTTCTCAGAGGCAGAGAACTCAAGTAAATGGCAAGATCATGGATGACGGCAATACC GACTCTGTCACTAACGGTGTGTAG
CDS sequence (LotjaGi3g1v0219000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTTACATCGGTCGTGAGGCTTCAAAGCTATGGAAGAGAATTTGCTCAGAGACAACTACTGAGCTCAACCTCCT TGCTGAGAATTGGAAGTACCTTCTCGCTGGTCTTATTGGTCAGTATATACACGGTTTGGCTGCCCGAGGGGTTCATTATT TTCATAGGCCGGGTCCTATTCTGCAAGATGTTGGATTCTTCCTTCTTCCGGAGCTTGGGCAAGACAAAGCTTACATCAGT GAAACACTGTTCACCTCTATCTTTGTGTCCTTTGCCTTGTGGACGTTTCATCCTTTCATATTGAAGAGCAGAAAGATCTA TACAGTTCTAATATGGTGCAGGGTTCTCGCCTTCTTAGTTGCTTCTCAGTTTCTTCGTATAATGACATTTTATTCTACAC AGCTTCCTGGTCCAAACTACCATTGCCGTGAGGGTTCCAAACTTGCCACATTGCCTCGTCCAGATACTTTCGGCGTGGTA TCTTGTATGGATGCGGTGACTTGA
Protein sequence (LotjaGi3g1v0219000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLYIGREASKLWKRICSETTTELNLLAENWKYLLAGLIGQYIHGLAARGVHYFHRPGPILQDVGFFLLPELGQDKAYIS ETLFTSIFVSFALWTFHPFILKSRKIYTVLIWCRVLAFLVASQFLRIMTFYSTQLPGPNYHCREGSKLATLPRPDTFGVV SCMDAVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 4.9E-96 | – | |
| Phobius | 1 | 81 | 81 | - | – | |
| PANTHER | 1 | 157 | 157 | 4.9E-96 | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 82 | 100 | 19 | - | – | |
| Phobius | 101 | 105 | 5 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 126 | 167 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0219000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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