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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0221300 |
| Transcript ID | LotjaGi3g1v0221300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1; TrEMBL-Plants: tr|K7KBB2|K7KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0221300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33408171..33412162) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAATTTCCAAGTCTGGCCACCATGAACTTCTCACATAATGAATGTATCACTGCAATGCCTAGTGTGTCTGAAGTTCC AAATTTGATAGAAATAAGACTTGACTATTGCAAGAACCTAATCAAGGTTGATGAATCTGTGGTATTGCTCCAAAAACTTG CTCACTTAAGTGCTGCTGGATGCGGTAAGCTTACAGATTTCCCGCGAAGCATGCATTTACCATCTCTGGAAGTCCTTGAC CTTAATTCATGCACAAGACTAAAACATTTTCCAGAGATAGTGTACAAGATGAACCAGTTAGTGAAGATAGATATAAAAAA TACTGTTGTTGAAGAGCTGCCAGATTCTATCAGTAACCTTACTGGTCTTGCTTCTATAGAGATGATAGGTTGCAGGAAAC TCAGATATATTCCACATAGCTTATTCATGTTAAAGAATGTTGTCACTTTTAAACTGGGAGGATGTTCTAACATTCGAGAA TCCTTCAGAAACTTTGCACGTAGCCCTGCAGCTGCCAATGGTCCTTCAACTTTAAAATCATTGTATTTTGAAAGTGGTGG TTTATCGGATGAAGATTTTGATGCAATTCTCAAATGTTTTCCAAACTTAGAAGAGTTGATTGCATTGGATAACAACTTTG TATCCCTCCCTGAATGCATTAAAGAGTGTGTTCACTTGACAAGTCTTGATGTGAGTGAGTGCAAGGAGCTTCAGAAAATT CCTGAATGCACAAGCTTGAGAATTCTTAATGTCCATCTTTGCAAGAAGCTTGAAGAAATTTCAGAGTTGCCATCTACTAT TCAAAAAGTGGATGCAAGAGACTGCTGCTCTTTAACTAGAGAGACATTAGACATGTTATGGTTTCTGGTATGTTATTGCT TTATTGCTTGTGCTTAGTAAGGGTGTGCATAGTTTGGATTTTTGAAAATCCAGTCAACATCCAATTCAAATCTAATCATA TGGTTTTTTTCATATGAACCAAACCACTTTTTATACTCCCAAACTGTTTTAAGTTTTGTCAAACTGGTTCAGATTCAAAA AACCGGTTTTTAAACTTATTTTCCAATCACGTCACATATCATATCTCTCATTTCTCTCTTTCTCTCCTTATTTATTTTAG TGTAAGTGTGGAAGCTTCTTCTTATATGACAGGTGAAAAAAGAGATACCGGGATTAGAAGTTGTGATGCACCCAACTGAG ATTCCAGACTGGTTTGACTGGAGGGACAAACGAGGAAATCCACGTTTCTGGACTCGTGGGAAGTTCCCTGTTGTTGCTTT AGCGCTGTTGTTTAGTAAAGAGAAAGGAGCATCTAGAAATTCTCGGCATCAACTTGTTGAGCTCCAACTGGTCATCAATG GAAAACGTGTGCCTCGCAAAGGCTGCTACAGCTTCAGAATGGAAGCAGAACATGTACTAGTCTGCGATCTACGACTCTTG TTCAGCGAAGAGGAGTGGCAGGGCCTTGATGAATTTCTAGTGCATGATTGGAATCAAGTGCAGGTTTCATATGAAGCCCC ATCAACCATGACATTAAGTAATTGGGGTGTTTTCGAGTACAAAAATGAAACCAACATGGAAGATGTGCAGTTCGTGTGTC CTGACCCAAGGTATATCTCAGATATGATAGCCAACAACATATCATCACCCACAATAGTACCTACTGGTGGAGATCCTATG TTGGAGATAAGGAAGAAGATACAAGAGATGGGCCTAGAAGACACATATGTAAATACTTTGCTCCAAATGGGAGGCTTCGA AAATAATAACTTTGAAGATAAAGAATTTGCTATGGAGCAAATGAATGTTCTATTGCAAAATCTGGAGCAGATGTCGAGGG AGGCTAAGGATGTATCACAAGGCAAAGCACTAGATGATAAATCCCTACTGAAACAGTTTTTAGACGCTCAGGAAGATAAG AGTGGTAGGATAATTCACTTTGGCGATCTCGCGTTGGTACCTGTAAATACTGGATTTAATCGACCTATAGATGTAGAAGA AGCTTTACGTTCAAACTCTAGTCATGTGATAAATTTACAGAGAAGAGATCCTATGATGGCGATATTCCATGAGGGGATAG TGGATGGACTCTCTGAAGCACAGAAAAGCTTTCCTGCTCTTGATATACTGAAAACTCTAATTGCAACCTTAAATAAGGGT AATAGGGTTGCATGGTCACTCCCAGATGGTCTAGTGCCGCCTCAACAGATGACATACATAGTAGGTGTTGTCAATGGACT CCGGGAAGCAAAGCTGAGCTTTCCCACTTTGGACGTAGATGCAATACTGAATTTTGTGTTAAGTAAAGTGGGGTTTGCAG AATTAAAGTTCACTGTGAATGGAGGAGGTGGAGTAGGAGGAGAAGCTTCAACAAGCTCTAGCCATCAAAGCTTTCCCCCA CTGGATGTAGAGACAACATTGAGTAATGTGTTGTTGGGAATGAGGGCCCATGAAGAAATGAAGTCCCCTATGAAGGTAGG AGAAGCTTCAACATCTGCTCAGTACCAAGGGAATAATTCAGATCAGGTACTACAAATACAGAGGAACAATCCTCAGGAGG AGGAAGAAAGAAGGATGGAGGTCATATTGTTGAAGGGAATGAGGGATGGACTTGTTGAAGCTCAGAACATGTTTCCTACT ATAGATATTGACACAATTATGGCTGCAACTCTTGAAAAGGGAATGAGGTTCCAATTGCCACCAGTGCCTGCAGAGTGTGG GAAACTACTATCCACACCCGAAATGAAGAGATACGTAGAAGGAATTATCAATGCACTCCAGGAAGCTAAGCTGAGCTTTC CCACTTTGGAACTAATGGCAATATTGGACCCTTTGTTAAATAAGGCAGCAACAATGGCGATATTCTCAAGTGGAATGAGG AAAGGACTTGTTGAAGCAAAGAAAAGTTTTCCTACTTTAGATATAGAAGCAACCATGAATATTGCAGCCTGTAATATTAC TAGGTTTGAAGGGACACCAGTCCCAGAGTCTGAGGTAGAAAAACTTGAACTAGAAAAGATGGTATACAAATATGGCATTA TCAACGGACTTGAGGAAGCAAAGCTGAGCTTTCCCTCACTGGATGTAGAGGCAATAGTGAGTAATGTGTTGGGTATGAGG GGGGGACATGAAGAGATGAAGTCCCCTATGGAGGTAGGAGAATCTTCAACGTCTGCTCAGCACCAAGGGAATAATTCAAA ATCTACTTTGAGTGGCTTGGATTTGCAGAAAGACAGTGGAAAAGAAGGTTGCAAGAAGCATAAGAAGCTAGCTGCTGTTT TGACAGAAAGAGGAGAAGAATTGCTGGGGCTCTATGATGCTGAGATTGAAGCCTTCCAGAAATCACAAGAGTCTGATCAT GATCTGATGAGTGCAGTATATTTCCAAGGAGTGAGGGATGGAGTCCTCGAAGCACATGCCCTATTGCTTGCTCTGGATGA CATGGACAAAGTAACTGATCCACAACATGTTACTCCTGATGATGAGGCTCCCTCAAGATCTGCTAATTCGAGTGGAAAAG AAGGGTGCAAGGGTGTTACAAAGCTAGCTGCTGTTTTGAAAGGAAGAGGTGAAGAATTGCAGGGGCTTTATGATGCTGGG ATTGAAGCCTTCCAGAATTCACAAGAGTCTCATGATCTGATGAATGCAGTATACTTGAGTGGACAGAGAGATGGAGTCTT TGAAGCACATACCATCTTGCTCGCTCTGGACATGGACAGAACATTGTAACTCCATAACGTTACTCATGATGATGAGGCTG CTAATCAATGAGGAATTTGGTCGCTTCTTTTTTTTTTGAAAAGATTTGTAGCTTTTGTAAAATGATGATCTGATTGTACT CTATGTGTGTCACATTATTTATGCAATTGTTATGCCTATGCTCCTATTGATCTTGGCCTTCATTAACCTTTGGAAAATCA ATTATTCATGTCTCTTCACCTCCACCTATTGGAGAGAAATACGAAAATAAGAGAGAAAATTGAAAGATATGA
CDS sequence (LotjaGi3g1v0221300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTCTCACATAATGAATGTATCACTGCAATGCCTAGTGTGTCTGAAGTTCCAAATTTGATAGAAATAAGACTTGA CTATTGCAAGAACCTAATCAAGGTTGATGAATCTGTGGTATTGCTCCAAAAACTTGCTCACTTAAGTGCTGCTGGATGCG GTAAGCTTACAGATTTCCCGCGAAGCATGCATTTACCATCTCTGGAAGTCCTTGACCTTAATTCATGCACAAGACTAAAA CATTTTCCAGAGATAGTGTACAAGATGAACCAGTTAGTGAAGATAGATATAAAAAATACTGTTGTTGAAGAGCTGCCAGA TTCTATCAGTAACCTTACTGGTCTTGCTTCTATAGAGATGATAGGTTGCAGGAAACTCAGATATATTCCACATAGCTTAT TCATGTTAAAGAATGTTGTCACTTTTAAACTGGGAGGATGTTCTAACATTCGAGAATCCTTCAGAAACTTTGCACGTAGC CCTGCAGCTGCCAATGGTCCTTCAACTTTAAAATCATTGTATTTTGAAAGTGGTGGTTTATCGGATGAAGATTTTGATGC AATTCTCAAATGTTTTCCAAACTTAGAAGAGTTGATTGCATTGGATAACAACTTTGTATCCCTCCCTGAATGCATTAAAG AGTGTGTTCACTTGACAAGTCTTGATGTGAGTGAGTGCAAGGAGCTTCAGAAAATTCCTGAATGCACAAGCTTGAGAATT CTTAATGTCCATCTTTGCAAGAAGCTTGAAGAAATTTCAGAGTTGCCATCTACTATTCAAAAAGTGGATGCAAGAGACTG CTGCTCTTTAACTAGAGAGACATTAGACATGTTATGGTTTCTGGTATGTTATTGCTTTATTGCTTGTGCTTAG
Protein sequence (LotjaGi3g1v0221300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFSHNECITAMPSVSEVPNLIEIRLDYCKNLIKVDESVVLLQKLAHLSAAGCGKLTDFPRSMHLPSLEVLDLNSCTRLK HFPEIVYKMNQLVKIDIKNTVVEELPDSISNLTGLASIEMIGCRKLRYIPHSLFMLKNVVTFKLGGCSNIRESFRNFARS PAAANGPSTLKSLYFESGGLSDEDFDAILKCFPNLEELIALDNNFVSLPECIKECVHLTSLDVSECKELQKIPECTSLRI LNVHLCKKLEEISELPSTIQKVDARDCCSLTRETLDMLWFLVCYCFIACA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 7.4E-101 | – | |
| PANTHER | 1 | 282 | 282 | 7.4E-101 | – | |
| Gene3D | 1 | 79 | 79 | 4.8E-8 | ||
| SUPERFAMILY | 2 | 276 | 275 | 9.18E-35 | – | |
| Gene3D | 80 | 278 | 199 | 1.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0221300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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