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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0226700 |
| Transcript ID | LotjaGi3g1v0226700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | far-red elongated hypocotyl 1; TAIR: AT2G37678.1 far-red elongated hypocotyl 1; Swiss-Prot: sp|Q8S4Q6|FHY1_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 1; TrEMBL-Plants: tr|V7APA2|V7APA2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0226700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35078397..35083785) extracted from Lotus japonicus Gifu genome v1.2.
CATGGATAAAAGAGAGAAAAGGACAAAAATGAAAAGTGTGGGTGCTGTAGTCTCGTACATACCTGGCATGGGCATCACAT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATATCCCACTTTCTGAGCTGTGAAGGCTCTGTGATGTTCTAGATCAA GATGGAGGCAAATTTCGAGAACCCATCTCAAATCAACAGGTCTGAATTTCTGGGTCTTCCTCAATTTTTTTTTTCTTGTT CTTGTTGCTACCCTTTTCTTATCACTGATTGTTAACACCGTTCTATGCTTTTCAAGCTACCTGTGATTTACTATTGCTGT GTTTTTAGCAACTAGAGGCTTATTCAGTGATGAAATCTTAAAAAGATATTATTTTTACTTATGAATAGGGATTTCAGATT TGTCTTGGTTGAGTTCTTTAATTATGTGTTCCAGTGAAGCATGAAGTAGTGATATTTATAGTTATTTGGACCTTGTGGCA TAACATATGAATTTATTTATTGCTTTTTGAATCTGGTGGTTCTAACTGGATGGTGTTTATTGTTTTGTTTCTATTATGTG TGGATACTTCAACTAAAGTAACCTGTAGTGTACAAACAATGAAATGAAATAAATTTTTGTTAGTGATTTGGGGAAATAAC GGCACTTGTCTCTGTGTGATTGTTTGTTTATGTTGAGAATGTTTTATTCCCCAAATTGGAACAGCTACATGTCAAGTTCT GAACTAGAGATAGTTTGCGTGTTTGTCTTTATGGAAAACATGAAATTGGATGCACTAATTACCTCCACTCTCAATTGTGA TTTCTTGCAATTTTTTGTTGTCTAGATTGTCTTTGAATTTAAAACCCATTTCATGGACATCGTTATAAAAGGATTGTTGG TTTGTTTAAGGAGCTCCTCGTTTGCACGATTAGAACCCTGTAAATGGAAGTTATGTGGAATAATAATATGGCCAATTGCA TATAAGTTCCTTGTATAAATTTGATTGAAGAGTGCTACAAACACAATATTTTGAACACGCTCTCTAACACACTCCTTGTG ATTGATCCATTTTCAAAATAGTCAATTATTTTCTCTCTCTAATTAAAAATTGTGTTGCTTTTGAAAAAATAAACCATTCA CATGAAGTGTGTGTGAGTTTGTTCAAAAGAGTGTGTTGCTAGCATTTCTCAATTTGATTTGTTTGTTAAATGATAACATT CATGCCTTGCATATGAAATATTCTCAGTTCTGTACCATTGTGCTTGCATTTCTGTGAGCTTTTTTCTTGTTAAACAAATT AGTCTGGTGACACTAAGCATTCTGACCTATACTATACTTCACCTACACAGCTTGAGTGTCATATGTATAGGAGTGAGTAT AATCTGACATATCATCAGGGATCAATACATCTCCAATATATGGAGATTTGTTTTGATATGTTTCTATTGAAAATTGTAAT TTTCAAGTTGTACTTGTAATTACTGTATTCTTTTTCAAATCACTAAGTAAATGTCCCCGATTGATAGCTCAAGTGGTAAG AGCTAGGGGACATATGAGTTGGGGTGGGGAGGTCCAAGGATCAATCCTCGAGGGTGTAATTTATCTTTCCGGTGTACCAA AAAAAATCACAAAGTAAATGGGTTCTTAAACCTAATGTGCACTGCATACTTAGTTATTAATTTTAGCATGAGGAATATTT TAGGAGAGGATATTATCCTACACAGATCAAACTCAGCAAAATGTGAGTTGAATAATAATGCTTCTTTATGTCTAAGATTT AAGGAGGTCTTGCTTTTTTGTTGTTTGTGAACGTTTAATTTTTTCCTTTTTTGCCTCTTAAATATTTTATTATCGTCTGT ATTGACAAATGACATTTGTCAAGTAAACTTTCAGATTCTGTGTTGATGGATTGCACAAGACAGATATCATTGAATGGAAC AAGAAGAGAAAACCACAGAGTGATCCATTGGATTTGCTTAGACCAAGGCATAAATGCTGGATAGGGAATTCCTCTTCTGA ACATGATTTAATATCTGATGAAAATCCAGTATTAGAGGGCATGCACATGTACGTTGTAAAGGGTAGAATGGATACGGAGT TACTTGACGTTTGTTCAGAACCTGAATCTGCCAAAGACAGCAATAGTTTTATTGAAGATTCCAGTACATCCATATCTGTA GATTCCAATAATGTTAAGGATAGTCATTCCTCTTTGGATGTATCAGCATCTGAGAAGGTATGCTACGAGGAAGATGAAAC ATTTGTTGACAAAGAATATAATCCATCTTATCATTTTGCTGATTTAAATGCTTTGAAGAGTCTTGAGGAGCACTTTCTGG GAATAGGAAGTGGCACAGATCACGTGTACTCAGGATATGCTAATGAAAACATTGAGGAGTCCGGAGATAAGGGATTTGAA GATATTCTTTATTCTAAAGGGGAGAATCCTACCACATATGTCCTTTCATCTGGAAGATGGAATGTAAACCAAGGTATTAA TCAATCTCGACAGTTACTATCCATGATAGAATCATGTTAGCATTCATGCGAAATTTGTTTCTGGAATACTTGGATTTGAG ACTGATTCATAATTCCTAGGTTGACATATACTCTTGTTTTTGTTACAGAGGTTCAATCAAGCACGAGGCCACCAACAATT GATCAAGAATTTGAGGAGTACTTTTCCATGCTTATGCTCTAGCAGATATTACTCACGTCGGCAGTAGATGTATATACTTT TGGAAATGGCTGTTGTAACTGTAAGTATTGCTCGTGTGAAGATTTTCGTAACTTGTTATTCTGAAGACTTTGCAACATCT TCAGAAGTAAGTTAGTTTGAGGTTCCTTTTGTGGCTTTTTTCTTCTTCCTTCTTTCTCAATCTCTCTCTCTCTCTCTCAC ACACACACACACTTCCCCCTTGGACCGAAATGCTGAAACTTGTGAATTATGAAAGTCTAAACCAAAATCTGTGTTATGGA TGGCGATTTTAATAAATGAGGCGAAAGCGGATAGAATTTTCTTTATCTTGTGTTATCATTTTTGTTTCCAAAACGTTATT TGTCTTGAGATCATTTAAAAGTATTTTATTTCATTATTTTCATTTTAGCATTATTCTCCACATGCCTAGCACAAGGTTGA GTATGTCAAGTGAAGACTAAGCTACATGAAAATAAGATTTGCATCTTATTTGCTGAATCTTGATTTAATGAAATGTCATA CTAAATGCCTCAATGATAAATTGCTTGTGGATGTGTATTACTAATGTATCTTGATTGGTACAGGTTTTAATGTGAAATGA TGGTTTAGCTTACTTGATTATCGTTTGAAATCCTTTAGAAAGTGAATGATACTTGTATAGGTAGGTTATAAGTTGTAATA TCAAATTGCTTGCAATAGTATTATATGATTCACCATTAGCTTCATTTTATGAAAACTCTGAAGTATAGAGTGACAAATTG GTTAATCTTCATGATATTCATGTATCAAGATCGAGGAACTGAGTGTTGAAGTTTGTAAAGATTGCTAGATATGATTAAAT GAGGTTATGATGTCAAGTTGTTCATAACCCTATCTGTGAGAAAATAAATGCTAAACTGTATTCAATGAAAGTTGAGTTTC TTTTAATGATAACTGATAAGTTGCTTTGAATGCTAATGCTTTGATTTTCTTTCATGACGCATCAAGCAAGTCAAGCACAG GATAATTAATAAATTGTCGTAGAGTATCAATGATGTGATTAATTCACTACTTCTAATTACTTATGGCATGTATTATGCTC ATGGATTGAATCTTATAGTAAATGATGGGTGGAAATTCATGGTTGAAGAAGATTGAATCATTTTGATAAACATGATAATT TATGAAGCAAGGTGTTTTAAGATAACAACACCATGAAAAAACCAAGTTGCATACCATACTAATTTATGGTTGATTGATTT ACTGATCCTAAACCTTACATGCCAAGTTTTGGTTCCTTAGTGTTATTATGGTGCTATAATGACCATTATTAAAAGAGCAC TTCAAAATATGGATCCCTTTAATATACACAAGAAAAAACTTGTGCAAAGTTACACGAGCTACTTTTGACATGTTCTTCAT TTCAAAAAAAAAAAAACTTTTGACATGTTCTTGTAGATTTCCCAATTTTTTTTTCAAACAAACTTATTTCTTAATCCCAA TATTTAATTTCTATTATGACTCATTTTCTTCCCTACTGCATATTCTCCTCGCACCACCACTACACCATCAAAGCCCCAAC CAAATGCATCATCCAATCTTCGTATCCATCAATTGAATCCAGCAAACAACATAAGCGAGGCTAAGTTTCAAAAGTGGTGT CAGCAGAGTTTCAAAATGAATAATGTTCCCTTCATACCTCTTTTTGAGGTGGAGAGTGGTGGAATGAGGAGAGAGATATG AAGAAAAGAAAAAGTAAGAGAGAGAAAGTATGGGATGTGATAGATGATAAGAGAAGAGAGAAAGAAATAAAAAGAGGTAG AAATGAAGTGTTTAAAAAATGAGGTGTGTATATATCATTATTGTTTCAAAACCAAACTATAATGGAAACATAAATACTCA GGAGTAGCTCAAATGATAAATTCACACAAAAAATGTCAACCCCACGAGTCAAATATAACAAAGATAAAAACCTTGAATAG TAAAACAGAGCAATTTGAAATTAGGTAAAGGAAAAGGGAAATCTGACAGTGGCGGCCTCCAGGAACCTTGGTCCTGGACG AGGCGAGACCCCATCCCCTAAAGGGGCTTGCCCAAGGACAATCAAGTCCGTAAGCAACATGGCATGCTAGTGGCGAAGGC GAAGACTTAGAGAGATTAGGACTTCATATAGTGATAATCGCCGCGAGCGATCACTTTATGTATATGGGTTGGGCCGAGAG TGCTAGGGCCCAACTAGCCCAATTAGCATAGGATTTAGAGTTCAATGAATACTCCCTATAAAAGAGAACTTTGACATCAT TGTAAAAGATCTTTTTGCATTTTATCTAAAGGATTAGGTTATTACCTCACCTTTACTCTGTTAGGGTTTATGACCTATAC CCTTTGTTGTTACTTTTGGTTGTCTTGCATTTTGTCCAAAACATCCTGATGTCGAAGCAGATGTTGTGACATCTGCCTTT GTGTAGCACCGGACATTAGTCCATTACTTAGAGTGCTTATGTGTGCCCTGAAAATCTGGTGAAGATTTGTTCGTGGTTAC TTACAGTTTAAGTAGCTATATCTTGGTTATTTATTGTGGGCTGGTTTAATTGTTGAGACAATATCTGATTGAGGATATGT CTCTATTGTATTAATGGTTGATTAACTTGTAAACGCAATCATTATTCTGGAAGATTGCGTTTTGATTTGCTGCTAATGGA CTACTTGCTTCAGCCTCTGAAAACCCCCC
CDS sequence (LotjaGi3g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAAATTTCGAGAACCCATCTCAAATCAACAGATTCTGTGTTGATGGATTGCACAAGACAGATATCATTGAATG GAACAAGAAGAGAAAACCACAGAGTGATCCATTGGATTTGCTTAGACCAAGGCATAAATGCTGGATAGGGAATTCCTCTT CTGAACATGATTTAATATCTGATGAAAATCCAGTATTAGAGGGCATGCACATGTACGTTGTAAAGGGTAGAATGGATACG GAGTTACTTGACGTTTGTTCAGAACCTGAATCTGCCAAAGACAGCAATAGTTTTATTGAAGATTCCAGTACATCCATATC TGTAGATTCCAATAATGTTAAGGATAGTCATTCCTCTTTGGATGTATCAGCATCTGAGAAGGTATGCTACGAGGAAGATG AAACATTTGTTGACAAAGAATATAATCCATCTTATCATTTTGCTGATTTAAATGCTTTGAAGAGTCTTGAGGAGCACTTT CTGGGAATAGGAAGTGGCACAGATCACGTGTACTCAGGATATGCTAATGAAAACATTGAGGAGTCCGGAGATAAGGGATT TGAAGATATTCTTTATTCTAAAGGGGAGAATCCTACCACATATGTCCTTTCATCTGGAAGATGGAATGTAAACCAAGAGG TTCAATCAAGCACGAGGCCACCAACAATTGATCAAGAATTTGAGGAGTACTTTTCCATGCTTATGCTCTAG
Protein sequence (LotjaGi3g1v0226700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEANFENPSQINRFCVDGLHKTDIIEWNKKRKPQSDPLDLLRPRHKCWIGNSSSEHDLISDENPVLEGMHMYVVKGRMDT ELLDVCSEPESAKDSNSFIEDSSTSISVDSNNVKDSHSSLDVSASEKVCYEEDETFVDKEYNPSYHFADLNALKSLEEHF LGIGSGTDHVYSGYANENIEESGDKGFEDILYSKGENPTTYVLSSGRWNVNQEVQSSTRPPTIDQEFEEYFSMLML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 236 | 235 | 3.1E-67 | ||
| MobiDBLite | 92 | 117 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to red or far red light | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. |
Expression pattern of LotjaGi3g1v0226700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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