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GO:0009639

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Response to red or far red light
Full defintion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Subterm of

Relationships

The relationship of GO:0009639 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmtg_far_red

Associated Lotus transcripts 15

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
LotjaGi1g1v0107600.1
– DUF641 family protein; TAIR: AT2G30380.1 MYB family transcription factor; Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|I1MBK1|I1MBK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0107600
GO terms
2
LotjaGi1g1v0602600.1
– DUF641 family protein; TAIR: AT3G60680.1 DUF641 family protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9U6Z1|A0A0L9U6Z1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0602600
GO terms
2
LotjaGi2g1v0381700.1
– Polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2; TrEMBL-Plants: tr|I1J8L8|I1J8L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0381700
GO terms
2
LotjaGi2g1v0381700.2
– Polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2; TrEMBL-Plants: tr|I1J8L8|I1J8L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0381700
GO terms
2
LotjaGi3g1v0040800.1
– UNE1-like protein; TAIR: AT3G14870.1 hypothetical protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151SPA4|A0A151SPA4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040800
GO terms
2
LotjaGi3g1v0040800.2
– UNE1-like protein; TAIR: AT3G14870.1 hypothetical protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151SPA4|A0A151SPA4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040800
GO terms
2
LotjaGi3g1v0226700.1
– Far-red elongated hypocotyl 1; TAIR: AT2G37678.1 far-red elongated hypocotyl 1; Swiss-Prot: sp|Q8S4Q6|FHY1_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 1; TrEMBL-Plants: tr|V7APA2|V7APA2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0226700
GO terms
1
LotjaGi3g1v0436600.1
– Myosin-4 protein (DUF641); TAIR: AT2G45260.1 myosin-4 protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151UC96|A0A151UC96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0436600
GO terms
2
LotjaGi3g1v0436600.2
– Myosin-4 protein (DUF641); TAIR: AT2G45260.1 myosin-4 protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151UC96|A0A151UC96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0436600
GO terms
2
LotjaGi4g1v0127200.1
– Polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3TAA6|I3TAA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0127200
GO terms
2
LotjaGi4g1v0127200.2
– Polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3TAA6|I3TAA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0127200
GO terms
2
LotjaGi4g1v0380100.1
– UNE1-like protein; TAIR: AT1G29300.1 intracellular protein transporter, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9TJZ4|A0A0L9TJZ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0380100
GO terms
2
LotjaGi6g1v0134400.1
– DUF641 family protein; TAIR: AT5G58960.2 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A072UXH5|A0A072UXH5_MEDTR DUF641 family protein; Found in the gene: LotjaGi6g1v0134400
GO terms
2
LotjaGi6g1v0134400.2
– DUF641 family protein; TAIR: AT5G58960.2 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|I1KYU1|I1KYU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134400
GO terms
2
LotjaGi6g1v0134400.3
– DUF641 family protein; TAIR: AT5G58960.1 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9VCY9|A0A0L9VCY9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134400
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0009959
Biological process Negative gravitropism 1 6.67