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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0226900 |
| Transcript ID | LotjaGi3g1v0226900.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isochorismate synthase; TAIR: AT1G18870.1 isochorismate synthase 2; Swiss-Prot: sp|Q9ZPC0|ICS_CATRO Isochorismate synthase, chloroplastic; TrEMBL-Plants: tr|G7JQL8|G7JQL8_MEDTR Isochorismate synthase; Found in the gene: LotjaGi3g1v0226900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35118475..35121605) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGGGGGTCATATACGGATATTTAATCAGGGCTTACATGTCTCTTATATTTGCGTATGCTACTCGTGTTAAATGAGC TTGAAGTGTTTGCTCATGATAAGGCTGGGATACCGTGAGTGGTAGCTCGGTAGGCACAGAAGGATTTCCAAACATGCACA TATCTATCTTATGTTATGTCTCATTCTATTCTGTGTGACAATCTTATGTTTTTGTGTTTTTTGTTGTTCCGTTCAGAGAC CCGTGTGTCAGGGATGCTACCTTTCAATGAACGGTTGCGGAGAAGGAGAATACAATGCAAGAAACCCTGTTGGCACCATA GAAACCCGGACCTTGGCACCAGTTGCATCACTTGCAATGGCTATGTGCAGCCTCAAGATGGCAATTTCAGAGTTGAAAGC AGACCCTCCATTTTGTACCTCTTCTGGCATAGTGAGAGTGCAGGTTCCCATTGAGGAGCAGGTTGAAGCCATTGATTGGC TCCATTCTCAGAGCCACCTTCTCCTCCCTCGCTGCTTCTTTTCCGGCAGGGAACATAATCCCCGCCGTGGAAACTTGGTC AGTGTTGCTGGTGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCCTATTGGGATTGGATATCTATAAGGAG GTAAGTGAGTCCTTGAAACTTTGATCTTTTAAGTTTGTTTTTAGAAATTTCTTTATGCCAACAAGTTAAGGCAATGTTTG GTTATCTGTTGGCACCAATGCAAACGGATGTTAATGCAAATGGATGTAAGCGAGATAAAAAGTTAACAGAACTTTTCTTA TGGATTGGAATTAAAGTTATTCATGTTTCCCTCAACTGGTATCCAAACTAATTAAAATATGAAGTCATTTCTAAATCACT CCAAGCAGCTACTACCAAGCAGAAATAACCCCTCCAAGATATATAGAACCTCAGAATCTGTTTATAATTTTCTTCGTGCT TTGATTTATATATTTTTATAAACTACTTTCTAGGTTTCTTTCTGAGAGATCCCCTTTAATCCGTGCATATGGGGCTATCC GTTTCAATGCGAAAGCTAAGATGTCATCAGAGTGGCTGGCTTTTGGCTCTTTCTACTTCATGATTCCGCAGGTGCATACA TTGTTTTTCTTTCCAAAAACTAATTTGCCATTGCATGCATGTGTTAGTATTTATAGCATCAGAAGCCAGAGATACCTAGC CAAAAAATTGACAGGTTGAGTTTAATGAGCTTGAAGGAGGTTCAATGCTTACAATAACTATTGCCTGGGACAATGCTCTT TCTTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGTTTGCAAAGTGAGTGCAAAGAAACTATGCCTTTTAAA TTATAAAGCTAGAGATTTTGTAAAAGCCCTCCTTTGCTTCAGGTTTCTTCTTCCATTGTTAAGTCTCCAAAACAAGCTCC TCCAACATTAATATTAAGCAGCCATAACATTCCCAGCAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTGCAGATGA TAGAGCAAGAAGATTCCTTGCTAACCAAGGTAACCTTTATCTCATGCTTGCTTGTTACTTTTGTCCAATTTTTTTCCTTT CCCTTTCTTTTCTCTGCTTTTGCATCAAAACTTGTGCTGCAAGAATCCATTTGAAAGTCCGTTTCTTTTGCCATAATGGA AATGTAGGTTGTGCTAGCTCGTAGCACCAGAGTTGTGCCTACTGCTGATATTGATCCTCTAATGTGGTTAGCTTGCTTAA AGGTGTTGTGCTTCTCTTTTCTCTTGTCACTTACAAATTGAATAGATTATCTTCATAATATGTAGTAGCATAATACTTAT GTCCCTATTGAAACTATTACAGGTTGAAGGTGGGAATGCTTATCAATTTTTCCTTCAGCCGCCTAATGCACCAGCATTTA TCGGAAACACAGTAAGTATGATGTCTGACTATAAACTAGGAAGGTTTATATAGTCTTTCCCTCATATCATTGTTTACGAT GTCATGATGTTTTGCTAAACGTTCTACAAAATATATAAATTTCACATAATAACTTCAGTTACTTTTTTATTATTATTAAA CTCATCTCAATAGCTTAATGTATACTTTAAAAGTCATTACGTGGATAACCTCTTTGAGAACTGTTTTTCTGAATTGAATC AGCAATGATAAATTTTTCTCCTGTGTTTCCATTTTAATTTTATGAACTTGATGAATAGCCAGAGCAACTATTTCACAGAA AACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAA CTTGATTTACTTACCAGGTTTACCTTGCTCCTTGGATCTTTGATGTTAACCTTTGTTATATATTTGCTTTCTTTTACGCT TGTGATTTCTTTGTTTACATTTGTTTCTAGCTTCTAAACTCTTGTTGTTTTGAGTTTTTTCACAGTCCAAAGGATGACAT TGAGTTTACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGGTAAGCTTAGTTCTGTCATATTGATTGCTTATCTGTC ACAGAAGTTACTCTGGAATATATGCTTGATTTTGTTTCTAAATGAATTTGTCCTTGAATCCATTGATATTCATAGTCATA GGTCTAGAGAGCAAGAGATGAAGGAAAAAAAAAATATTTTAATAAAATGATCATTGCTTGTATGATGTGAACTTTAAAAA TCTGGTGTTGATATCTTTAGCCTCATGTTGCTGGTGTAAAAAATCTGAGAGTCAAAAGGATTTTATCTGTTTCTCTAACT AAAACCTTGAAGGTAAGTTGTCCTTGATACGACAATAAGGAAAAATAGATTAAAAGGCTGGACTGTATAATGCCACACTC AGTTTGCTGTTTCAATTTGCATATAACTATTGCATCTCCTTGGAGCCATTTAAGAACTTCCTTGGTTAAGTTGAGGATAA ACCATCTATCACAGGGATGTGTTTTGGCAGGCAGTATGCGAGAACGTTGCAATCAAGCCGAAGAAAATGATAAGGAAACT ACCCAGGATCCAACATTTATTTGCTCAACTAGTCGGCAAGTTAAGAAGTGAAGAAGATGAGGTAACTATAATATAGAGTG CAAATACTTGA
CDS sequence (LotjaGi3g1v0226900.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGTTGCGGAGAAGGAGAATACAATGCAAGAAACCCTGTTGGCACCATAGAAACCCGGACCTTGGCACCAGTTGC ATCACTTGCAATGGCTATGTGCAGCCTCAAGATGGCAATTTCAGAGTTGAAAGCAGACCCTCCATTTTGTACCTCTTCTG GCATAGTGAGAGTGCAGGTTCCCATTGAGGAGCAGGTTGAAGCCATTGATTGGCTCCATTCTCAGAGCCACCTTCTCCTC CCTCGCTGCTTCTTTTCCGGCAGGGAACATAATCCCCGCCGTGGAAACTTGGTCAGTGTTGCTGGTGTGGGTTCAGCTGT TTTCTTTTCCCAGCCACATCCATTTTCCTATTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGATCCCCTTTAA TCCGTGCATATGGGGCTATCCGTTTCAATGCGAAAGCTAAGATGTCATCAGAGTGGCTGGCTTTTGGCTCTTTCTACTTC ATGATTCCGCAGGTTGAGTTTAATGAGCTTGAAGGAGGTTCAATGCTTACAATAACTATTGCCTGGGACAATGCTCTTTC TTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGTTTGCAAAGTTTCTTCTTCCATTGTTAAGTCTCCAAAAC AAGCTCCTCCAACATTAATATTAAGCAGCCATAACATTCCCAGCAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTG CAGATGATAGAGCAAGAAGATTCCTTGCTAACCAAGGTTGTGCTAGCTCGTAGCACCAGAGTTGTGCCTACTGCTGATAT TGATCCTCTAATGTGGTTAGCTTGCTTAAAGGTTGAAGGTGGGAATGCTTATCAATTTTTCCTTCAGCCGCCTAATGCAC CAGCATTTATCGGAAACACACCAGAGCAACTATTTCACAGAAAACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACC CGTGCTAGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAACTTGATTTACTTACCAGTCCAAAGGATGACATTGAGTT TACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGGCAGTATGCGAGAACGTTGCAATCAAGCCGAAGAAAATGATAA GGAAACTACCCAGGATCCAACATTTATTTGCTCAACTAGTCGGCAAGTTAAGAAGTGAAGAAGATGAGGTAACTATAATA TAG
Protein sequence (LotjaGi3g1v0226900.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGCGEGEYNARNPVGTIETRTLAPVASLAMAMCSLKMAISELKADPPFCTSSGIVRVQVPIEEQVEAIDWLHSQSHLLL PRCFFSGREHNPRRGNLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERSPLIRAYGAIRFNAKAKMSSEWLAFGSFYF MIPQVEFNELEGGSMLTITIAWDNALSWSWETAINELRATVCKVSSSIVKSPKQAPPTLILSSHNIPSKVDWDLAVNRAL QMIEQEDSLLTKVVLARSTRVVPTADIDPLMWLACLKVEGGNAYQFFLQPPNAPAFIGNTPEQLFHRKRLHITSEALAGT RARGVSLALDRQIELDLLTSPKDDIEFTIVRDTIRRKLEAVCENVAIKPKKMIRKLPRIQHLFAQLVGKLRSEEDEVTII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 400 | 400 | 4.6E-196 | – | |
| PANTHER | 1 | 400 | 400 | 4.6E-196 | – | |
| Gene3D | 31 | 400 | 370 | 1.9E-55 | ||
| SUPERFAMILY | 65 | 398 | 334 | 2.49E-43 | ||
| Pfam | 230 | 399 | 170 | 3.9E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi3g1v0226900.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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