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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0233200 |
| Transcript ID | LotjaGi3g1v0233200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Terpenoid synthase; TAIR: AT5G23960.1 terpene synthase 21; Swiss-Prot: sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase; TrEMBL-Plants: tr|G7ITN9|G7ITN9_MEDTR Terpene synthase family, metal-binding domain protein; Found in the gene: LotjaGi3g1v0233200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36766579..36767763) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGATGATACTTATGACGCCTTTGGCACAATTGAAGAACTTGAACTCTTCACCCAGGCAATCCAAAGGTTGATTTAAA AAATCTTGACATTTAATTTAGTGTTGCAATCCTCCTAATTAATGAATTCAATATTTTAATATATAGTTTTGGGTCGTAAT TCTCTGTTGTTTTGAATTTCAGATGGGATATTAGCCTTATTCAATCTCTTCCAGAATGCATGAATGTTGTGTATAGCGCA ATTGTAGGACTTTGGGATGAAATAGACATGACTATTGCAGAAGAAAGAAAATCGGCTTTGGTGTTGCCATATATTAAACA TGCCGTAGGATTTCAGTTCCTATATTCTTTAAGACTGAAATATGAAGATTTAATTACACAATTTACTTAAATAATTAATC AATAATTTGTTTGTTTTACCTACAGTTCTATAACTTGGCACAATCCTACTTTATTGAAACTAAATGGTGTCATGAGAGCT ATGTTCCAACATATGATGAATACAAGGCTAACGGAGTTGTATCTTCTACATGCCCACTTCAAATAGTATCGTTTGTTGGC CTGGGAGAATTTTCAACCAAAGAGTTGCTTGATTGGATTTCCAGCAATCCAAGAATCATTGAAGCTGTATCAATTACTAG CAGACTCATGGATGACATATCCTCACATAAGGCAATCAATCTTCCCTTACTTTTTATTTGGTTTGATATATATACATTTT GAATCTATGACCTACGTCCTACGTTACAACTCTTTTCAACTTTTTTGTTTAATATTTGTAGTTTGAGCAGCAAAGGGTAC ATGTTGCTTCAGCAGTTGAATGTTGTATGAAGCAATATAACATTTCACAAGAAGAGGCTTATAAGCTCATTCACAAGGAC ATGACAGATTTATGGATGGTTATAAATGAAGAGTGTCTCAAGTTAGATCGCATCCCCAACCCCGTGCTTGAATGTATTCT TAATGTGGCGCGAGTGACTGAGTTTACCTATGAAAACTTTGAGGATAGGTACACAAATGCGGAACTGCTGAAAGAATATG TGGTTTCACTGCTAGTAGACCCAATATAAGCATTGAGAAACATGAGGAGGAGAAGTGAAATGATTGTTATAAGTTGCTAT GTTACACTTTTTTCACATCCTGTACTAAGTAATAACTAATAACACACAACTTAATTAGTTGTAAG
CDS sequence (LotjaGi3g1v0233200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTTGTGTATAGCGCAATTGTAGGACTTTGGGATGAAATAGACATGACTATTGCAGAAGAAAGAAAATCGGCTTT GGTGTTGCCATATATTAAACATGCCTTCTATAACTTGGCACAATCCTACTTTATTGAAACTAAATGGTGTCATGAGAGCT ATGTTCCAACATATGATGAATACAAGGCTAACGGAGTTGTATCTTCTACATGCCCACTTCAAATAGTATCGTTTGTTGGC CTGGGAGAATTTTCAACCAAAGAGTTGCTTGATTGGATTTCCAGCAATCCAAGAATCATTGAAGCTGTATCAATTACTAG CAGACTCATGGATGACATATCCTCACATAAGTTTGAGCAGCAAAGGGTACATGTTGCTTCAGCAGTTGAATGTTGTATGA AGCAATATAACATTTCACAAGAAGAGGCTTATAAGCTCATTCACAAGGACATGACAGATTTATGGATGGTTATAAATGAA GAGTGTCTCAAGTTAGATCGCATCCCCAACCCCGTGCTTGAATGTATTCTTAATGTGGCGCGAGTGACTGAGTTTACCTA TGAAAACTTTGAGGATAGGTACACAAATGCGGAACTGCTGAAAGAATATGTGGTTTCACTGCTAGTAGACCCAATATAA
Protein sequence (LotjaGi3g1v0233200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVVYSAIVGLWDEIDMTIAEERKSALVLPYIKHAFYNLAQSYFIETKWCHESYVPTYDEYKANGVVSSTCPLQIVSFVG LGEFSTKELLDWISSNPRIIEAVSITSRLMDDISSHKFEQQRVHVASAVECCMKQYNISQEEAYKLIHKDMTDLWMVINE ECLKLDRIPNPVLECILNVARVTEFTYENFEDRYTNAELLKEYVVSLLVDPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 212 | 212 | 1.6E-59 | – | |
| PANTHER | 1 | 212 | 212 | 1.6E-59 | – | |
| Pfam | 1 | 155 | 155 | 3.1E-42 | ||
| SUPERFAMILY | 1 | 212 | 212 | 2.65E-50 | ||
| Gene3D | 1 | 212 | 212 | 3.1E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Terpene synthase activity | Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi3g1v0233200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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