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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0233800 |
| Transcript ID | LotjaGi3g1v0233800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2H2-like zinc finger protein; TAIR: AT5G54630.1 zinc finger protein-like protein; Swiss-Prot: sp|B8I1A3|RUVA_CLOCE Holliday junction ATP-dependent DNA helicase RuvA; TrEMBL-Plants: tr|C6TA36|C6TA36_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0233800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37004685..37007818) extracted from Lotus japonicus Gifu genome v1.2.
CCCTAATCTTTTCCTTAGAATGTTAGTACAGTGATAGCGTATATTCAACAATCTACACAAGCAAATAGACTAATACAACT TTTTCCTTTTACACTTTTTAACTAGATAAATGTCGTGATCAAATCTTTCATAAAACGAAGCAACGATATGCAAACATGAT CTGCAATTTTTTTGCCCATTTTTTTACACAGTGAATCCATGAAAATTAATTATCACCAGTGTTTGAGTGCAAGACTAGTT CATTAAATAGCCCCACTACTGAACATGGTTTGTCCAAGTTAGTTGTCACTTGTCATGTTGTCCAAGTCTCATAAGAGCCA AAGATTCTTCACCACTCTTTTTAAATTGTGATATGATCATGTTACTTCTTCTATGAATTTGAGTTCCTTTGTTTCACTTT CACCCCCTCTCTAAATGTGCCCACTGACACAACACAACACAACACACCCTATGCAAATTGCAAAACACCCTTCTCTGTGA ACTGCTGACAACATTTGTACTTGAATATTTTCATGGTAACCTGATAGTTTCTTTTAAATTTTCACTTTGAGAGAGCATCT CTCTTCTGAAGCATGTTTTTGCCTACCAGTTGTTTGATGAATTGATGCATAGTTGTTTCAGGAAAGGAAAATTAAAGGGG TGTTTGCATAAAGAAGAAACATAAAAGGAGCTGCTGGTGTTGGCATGGTAAAGGGAATGTGGAACTTTTTGGGGGTGAAC ATTCTAAAGGAGAGTTAAGTTAAAGAGTTCAGAAGCTTGGTAGTTGTTGAAGTGTACCTACCTAGGAGGGAAAAAAAGGT GGAAAGGAGATAATATGCCAACTGTGTGGTTCTCCCTGAAGAGGTCTCTACACTGCAAATCAGAGCCAACAGATGTTCAT GTTCCAAAGTCAAGGAAGCATTTGGCCACAATCTTGACTAAAAGGGCAGGGACAGGGAGGTCAGGGTGTTCAAGGTCCAT AGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCATTTAGAGAAGCCACCAAGTTGCAGCCCGAGGTCCATAGGGA GCAGTGAGTTCCTCAACCCAATAACCCATGAAGTCATTTTGAGCAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGA GGATTCCAAGAAGGAGGGGTTGCCAGTGATGGTAACAACAATGGTGGTGAAACTGGTGATTCAACCTTTGTAGGTACTCT AAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCACTATTTCAACCCTTCTTATAAGACACCAGCCACTCCTC CAAGGAAGTTATCACCTTTCCTTTCATCAGATAAAGAAGGGTCTGGCTTCCATGGTGCTGGATTTCATTCTAGCCACAGG TTGTCCCTTGAGACAGATTCTAATGGGCCTTGTAATGTGACTTGCCACAAATGTGGAGAGCAATTTAGCAAATGGGAAGC TGCTGAAGCTCATCATCTCTCCAAGCATGCTGGTAAGTCACCATTTTGTTTAATTAGCTTCTTCTAATCTCATAAACTTT CTAGCCACATCTATGTCAAGTTGTACATGATTTCTTATGTTATGTTGAGGAACCTTTTGTTTGGAACAACCAAAATGGTT TCTTTTCATTGCCTTGTATTTGCAACAACCTTAACCAAGAGAAGTTCTATGAGTGAACACTCAGTTTGTCTTGAAAGAAG AAAATGCCCTCAAAAGTCTCTAAATGTGTGAAGTTAGTCAAGTTAGTCCCTCTGTCACTTTTGGTTAGCTACACATTAAT GGATTTTTTAAGGTATTTCCTTCTTTCAGGGATGAACCTGGAAACACGGTATTTTTGCATGGATGAATCTGAGGGTTCAC TCGAATTTATATTCTCTTGGTAATTTTTGCACTGTTTTTTGGATTAAGAATTAAAGGGCAAGTTTTTGTTTTGACAGTTA CTGAACTTGTCGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACGAGCTGGTTAAAGTCTGAGAACCAC TGTGGTCGAATTGAAAGAGTTTTGAAAGTCCATAACATGCAGAAGACACTGGCTAGGTTTGAAGAGTACAGAGAGATGGT GAAAATCAAAGCCAGCAAACTCCAGAAGAAGCATCCTAGGTGTTTGGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCA CCACTCTTGCATGCTCTCTTGGTCTCAATGGTTCTTCCAGCCTGTGCCAATATGAAAGATGCTGTGTTTGTAGAATTATC AGAAATGGGTTTTCTTCCAACAAGGAGGAGCTCAAGGGTGGAATTGGTGTTTTCACTACTTCCACAAGTGGAAGGGCTTT TGAATCTATTGAGATTTTAGGCCATGACCCATCACTGAGAAAAGCATTGATAGTATGCAGAGTCATTGCTGGCAGGGTCC ATAGACCTCTGGAAAACATTCAGGAAATGGCAGGACAGACAGGGTTTGATTCATTGGCTGGCAAAGTTGGTCTCTATTCA AACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTCGTTTGCAAACCCTGAAGCTAAGG TTAAAGTAATGCCAGTTTGCATGTTTGGGTACAATGTGATTTTTTTTAAGTTGGAAGAATTGATTCTGGAAAAAGCTACT CCGAGTATCTTTTATGGCAGCAGAATTGGTTCCGGTAGATCTGAATGAATTCAAACTTGCTAAATATTGATTGTTTAGTT TTTAAGGGATAAGGAGGTTCTTCACCAAGATTTTGAAGAATTTTGGTTCAACTTCCCAAGTCATGTGTGCTTCTTTGTTT ATTGAATGAATCACCTATTCATACATTTGTAACTTTTTTTAGTGGCACTGAAAATTTTCATCTGCAGAAGGATGATGAAG TGCCCTAAGTACATGTTGTAAGATATTGACATCAACCTCAGCTTAACTAATTAACTACCCTTTGGATGTTTCCACTTGGA TTAATGGTGATTGACTCCTTGCTGTTGGTTTCAGATAGTAAATTTGTTTCCTTGTTGTATTAATTGGTCTATAAATTTTG TCTATTTGAATTGGGTAATGGCCATCTAATGTTGGTTAGATTTTACTTAATAGTATCAAATTGCAAGATATAGAAGAATC CTACTTGTATGAGC
CDS sequence (LotjaGi3g1v0233800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAACTGTGTGGTTCTCCCTGAAGAGGTCTCTACACTGCAAATCAGAGCCAACAGATGTTCATGTTCCAAAGTCAAG GAAGCATTTGGCCACAATCTTGACTAAAAGGGCAGGGACAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAG ATGTCATCCATGGAAGCAAGAGGCATTTAGAGAAGCCACCAAGTTGCAGCCCGAGGTCCATAGGGAGCAGTGAGTTCCTC AACCCAATAACCCATGAAGTCATTTTGAGCAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGAGGATTCCAAGAAGG AGGGGTTGCCAGTGATGGTAACAACAATGGTGGTGAAACTGGTGATTCAACCTTTGTAGGTACTCTAAGGCCTGGGACTC CTGGCCCTGGAGGGCACCCTACAATGCACTATTTCAACCCTTCTTATAAGACACCAGCCACTCCTCCAAGGAAGTTATCA CCTTTCCTTTCATCAGATAAAGAAGGGTCTGGCTTCCATGGTGCTGGATTTCATTCTAGCCACAGGTTGTCCCTTGAGAC AGATTCTAATGGGCCTTGTAATGTGACTTGCCACAAATGTGGAGAGCAATTTAGCAAATGGGAAGCTGCTGAAGCTCATC ATCTCTCCAAGCATGCTGTTACTGAACTTGTCGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACGAGC TGGTTAAAGTCTGAGAACCACTGTGGTCGAATTGAAAGAGTTTTGAAAGTCCATAACATGCAGAAGACACTGGCTAGGTT TGAAGAGTACAGAGAGATGGTGAAAATCAAAGCCAGCAAACTCCAGAAGAAGCATCCTAGGTGTTTGGCTGATGGGAATG AGCTTTTGAGGTTCTATGGCACCACTCTTGCATGCTCTCTTGGTCTCAATGGTTCTTCCAGCCTGTGCCAATATGAAAGA TGCTGTGTTTGTAGAATTATCAGAAATGGGTTTTCTTCCAACAAGGAGGAGCTCAAGGGTGGAATTGGTGTTTTCACTAC TTCCACAAGTGGAAGGGCTTTTGAATCTATTGAGATTTTAGGCCATGACCCATCACTGAGAAAAGCATTGATAGTATGCA GAGTCATTGCTGGCAGGGTCCATAGACCTCTGGAAAACATTCAGGAAATGGCAGGACAGACAGGGTTTGATTCATTGGCT GGCAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTCGT TTGCAAACCCTGA
Protein sequence (LotjaGi3g1v0233800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTVWFSLKRSLHCKSEPTDVHVPKSRKHLATILTKRAGTGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFL NPITHEVILSNSRCELKITGYGGFQEGGVASDGNNNGGETGDSTFVGTLRPGTPGPGGHPTMHYFNPSYKTPATPPRKLS PFLSSDKEGSGFHGAGFHSSHRLSLETDSNGPCNVTCHKCGEQFSKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTS WLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTLACSLGLNGSSSLCQYER CCVCRIIRNGFSSNKEELKGGIGVFTTSTSGRAFESIEILGHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLA GKVGLYSNIEELYLLNPRALLPCFVVVCKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 430 | 430 | 7.6E-204 | – | |
| PANTHER | 1 | 430 | 430 | 7.6E-204 | – | |
| ProSitePatterns | 197 | 218 | 22 | - | ||
| Gene3D | 210 | 429 | 220 | 2.5E-13 | – | |
| SUPERFAMILY | 220 | 429 | 210 | 1.04E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0233800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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