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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0235100 |
| Transcript ID | LotjaGi3g1v0235100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH37|ILR3_ARATH Transcription factor ILR3; TrEMBL-Plants: tr|U5TZE9|U5TZE9_PHAVU Transcription factor ILR3; Found in the gene: LotjaGi3g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37300973..37303695) extracted from Lotus japonicus Gifu genome v1.2.
ATTCGACACATCACATCACTCACTCTCACACGCTGAAGCATTAGATTCATTCTCCTTTACACAAAAGGAAAAATAAAAAA GAAAACGAAAACGAAAATACCACTCTTTTTTTCTCAGCCCCCAAACGTGCTTCAACCAAATCCTTCATCACTCTCTTTCT CTCTCAGAAAAAAATATCAATAAATATACTTTTTATTAAGAAACAAAATTAGCCTCCTCCACTGCCGGGAAAATTCACCA TTTTCCGGGAAAATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACGGCTTGATCGACGACGACATTCCCGGCTC CGATGGCTCCTTCACGCTCTCCGCTTCCGCCTTCAACTGGCCTCCACCACCACAGCCCTCCAATGTCGGGTACTCAATTT CCTTCCTCAATTTCTCTCTGTCGATGTAATTAGGGTTTGCATGTCACTTCATGTTGTTACACGTTTGCAAATTGTGTGTG TACATAGAAGAATTGTGCTGTGTGGTTTTGATTTGGTTTGAAAATCACGAATTGTTGCAGTTTTTTTCACTGTTGGTTGT GGATTTGCTCAGTTTTGCCTAATTGGGTCTGTCTGTGAATTTGTAGTTTGACTTGAGGTAGCTTTTAGACATGCAAGTTC TTGAAGCATGTGCTGCTGCATTTTGTATCAAGAGATGCTAATTGTGCTGTAATCTGCTTGTAAGCTGTGTGTATAAATTG ACACCAGTGTAATTTAAGTTGTTGTCTGAGCAGAATGAGAAAATAATATTGTGTGATAGCTGATAATATTTCAACCCCTG AATATTTGTTTATTTTGCACTTCTGTTTTGATGATACTGTCTGCTTCTAGGGTTGAAATTGATGGCTCCCTGGGGGATTT TGATGGGCTCAAAGATCCTGGTGTGAAGAAGAGGTACACAGTGCTTTTTACCTGTCATTTCTCATAACACATGCCATTTA ATATTAACCAACATGTGTGGTATGGCTACATACCACTTATTTTTTATTTCCCGGTGTCTATTCTTTGGCTTGTGTGGACT TCTTATTCTTTGGCGTACCATTTTGTTTCTTTTGTTCTTCTTCTACTCCTTAATTTGTGTTCTAACAGTTAAGGACTGAA ATAAAAAGGCAGTGTTATCAATTAACTTACGGGTATCAAATAATATAATTGAGTCAAATGGCGAATTAGCATGGTTTCTG AAATGAGGATGATAAGCTCTAGCGTTAGCGCCTAGCAGTATTGGTTCAGCAGCATAAATAAAGAAATTTCCATAGAAATC CTATTGCATATGCTTCAGTATAACCCAGTTTATTTTTCCCTGTTTTCTCCAACCTCTCTCCTCACAACTTCTTTCACTGT CCAAAGCATTCAGCATCATTGCTCTTTGTAATTCAACACCTAAAACTTAACGATGAGTGAATCCAATCTAGATAGTTGCT ATTAGAAAAAAGTTATTCCATTTCTCTTGCTTATTTTATTCCTACTGCAGGGGTAGAACTGATTCATGTGCACCTTCTAG CTCTAAAGCTTGCCGGGAGAAGTTGCGGAGGGATAAACTGAATGACAAGTAATTTTTTTTATTTCCACCTTCTTCCATCA ATCTGTTTTTTATCCTTTTCATGGGATTGTGTTGAAATGTGTATTTGGGGCATGTATCTAATTGATTGACATGGATAGGT TTGTCGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTATTCTTATAGATGCAGTTCGA GTGGTGACGCAGTTGCGAGGTGAAGCCCAGAACTTGAAAGACTCAAATACAAGTCTTCAAGAAAAGATAAAAGAGTTAAA GGTGAGACCTCCATTTGTTTTCAATACTTTTATTTTTGAAGGTGGCAGGTCTTCATTCTAGATCATTTCATTTCCTTGAG TTTTCTGCTGTAACAGTTTTACTGTGTAGCTCTGATTAAAACATCATGTAGGGACCTTATATAATCTAACCATTGAATAC CCTATCTATCTACTATGTAGGCTGAGAAGAATGAGCTTCTTGATGAGAAACAGAGGCTTAAAGCAGAGAAAGAGAAGTTG GAGCAGCAGGTGAAATTAATGAATGTTCAACAACCTGGTTTCTTGCCAGCCCCTCCTACAATTCCTGCTGCATTTTCTGC ACTTGGTCAAGCCCCTGGCAGCAAGTTTGTGCCTTATGGTTACCATCCAGGAGTTGCCATGTGGCAATTTTTGCCGTCTG CTGCCGTGGATACCTCACAGGACCATCAACTCCGACCACCAGCTGCCTAAGTTGGCATTGTACAATTACTTGGCCTTCCA TTCTGGCCCAGAAATTGTATTAATTTACCCTAAAATTCTTGCCTTTTAGCAGTCTACCAAGTATTCTAACTGGAATCAGT GGTGACTTTGACTGTATTTGGCATCTGATACTATTATGAAGTAATGCTGGTATTTGCATGTATATGTTAATTAGTGTGTG GGGCTCTGTTCACTTGGCTTTTATCTTTGTTACTCAGTTTCAATATAATCCAAGGTCAAGTAAAAAGAAAGAATGAATTC TTGCAAAACCGTATTATAATTGGTGAAATGTGAATGTTGCTATAGTTCTGAATTTCTACCACATCCTTTTTTTTTCAGCA GGAAAGAAAAGTTCTAAATTAAAACCAATTGGAGTTTCTCCATTAACGAGATGCACGTGATTAAGTACATGTATGGATAC TGG
CDS sequence (LotjaGi3g1v0235100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACGGCTTGATCGACGACGACATTCCCGGCTCCGATGGCTCCTT CACGCTCTCCGCTTCCGCCTTCAACTGGCCTCCACCACCACAGCCCTCCAATGTCGGGGTTGAAATTGATGGCTCCCTGG GGGATTTTGATGGGCTCAAAGATCCTGGTGTGAAGAAGAGGGGTAGAACTGATTCATGTGCACCTTCTAGCTCTAAAGCT TGCCGGGAGAAGTTGCGGAGGGATAAACTGAATGACAAGTTTGTCGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCC CAAAACAGACAAGGCTGCTATTCTTATAGATGCAGTTCGAGTGGTGACGCAGTTGCGAGGTGAAGCCCAGAACTTGAAAG ACTCAAATACAAGTCTTCAAGAAAAGATAAAAGAGTTAAAGGCTGAGAAGAATGAGCTTCTTGATGAGAAACAGAGGCTT AAAGCAGAGAAAGAGAAGTTGGAGCAGCAGGTGAAATTAATGAATGTTCAACAACCTGGTTTCTTGCCAGCCCCTCCTAC AATTCCTGCTGCATTTTCTGCACTTGGTCAAGCCCCTGGCAGCAAGTTTGTGCCTTATGGTTACCATCCAGGAGTTGCCA TGTGGCAATTTTTGCCGTCTGCTGCCGTGGATACCTCACAGGACCATCAACTCCGACCACCAGCTGCCTAA
Protein sequence (LotjaGi3g1v0235100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSPENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWPPPPQPSNVGVEIDGSLGDFDGLKDPGVKKRGRTDSCAPSSSKA CREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELLDEKQRL KAEKEKLEQQVKLMNVQQPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 1.5E-122 | – | |
| PANTHER | 1 | 236 | 236 | 1.5E-122 | – | |
| MobiDBLite | 59 | 82 | 24 | - | – | |
| ProSiteProfiles | 74 | 125 | 52 | 12.62 | ||
| Gene3D | 77 | 153 | 77 | 7.4E-13 | ||
| CDD | 77 | 130 | 54 | 3.69231E-8 | ||
| Pfam | 78 | 125 | 48 | 5.9E-10 | ||
| SUPERFAMILY | 78 | 145 | 68 | 1.18E-12 | ||
| SMART | 80 | 131 | 52 | 2.7E-8 | ||
| Coils | 122 | 177 | 56 | - | – | |
| CDD | 140 | 172 | 33 | 6.55834E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0235100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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