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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0236000 |
| Transcript ID | LotjaGi3g1v0236000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein; TAIR: AT3G20600.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|O48915|NDR1_ARATH Protein NDR1; TrEMBL-Plants: tr|D8WJ57|D8WJ57_SOYBN NDR1b protein; Found in the gene: LotjaGi3g1v0236000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37509994..37513560) extracted from Lotus japonicus Gifu genome v1.2.
CTCGTTCATAACTTCTCAATAATGATCACTAAGAGTTTTTTAGAGTGTCTCAAGAACCTACATTGATGAACACACACAGA CACGGTCTCTTCCTCAAATAATCATTTCACTAGAGAATCGTTACGTTAATTTTTGAATCGACCCACACAACTATCTACTT TGAAATCTGTTTGTAAACCAATAACCACTAAAGCTAAGAACATCAACAAAGCATCAAATAATCACACCATGATTTATAAG TTGGTTGTTTGACTTTTTCTTTGAAAGTTCTAATTGTTAATGCTTTGTTTCGTGGCTTTCTAATTGGCTCATACTGTTTT TTAGTTACATTACTTTTGGATTTGCAACTACTAAGAGGCTGTTTAAGTCTTTAGTGTCCGCGTACGAGTGTATAATGACC TGAACTTCGAATCTCCATCTTGGAAACTTCCCATTTCACACCCCAAAACCAGAAATAAAACACAGATTTCAGAACAAGGA ACAAACAAAACAAAACAAACAGCAAAATTAGAAGTACTCAAACAATTTCTGTCACTGCTCTCCGTGTTTCCTCCGACCAC CGTAGATGACGGCGGAATCCGACAACTGCTGCTCCCGCTGTTTGGGCTTCATAACAACCATGGGCCTCGCCGCCCTATTC ATATGGCTGAGCCTCCGAGTCGACGAACCCAAATGCTACATCGACTACATTTACATTCCTGCCCTCAACAAAACCCTAAA TTCCCCTTTCACAACAAACTCCACTCTCAACTTCACCCTCAAGCTCGTCAACCCCAACAAGGACAAGGGCATCAAATACG ACGCCGTTCGCCTCCGCTTCGCCATCTTCGTCGACCACAACACCACCCGCCCCATCGGCAACGCCACCGTCGGGGGATTC TACCAGGGCCACGAGAAGAAGGCCCGCAAGCCCGGATCCCTCAACGCCGCCGCCGGAAACCTCACGGCGAAGGTCGACGG GAAGATGTACTTCCGCGTGGAGTTTGATACGGCGGTGAAGTACAAGATCTCGCTGTGGTACACGAAGAAGAGGGACTTGT TGTGGGGAGGGGCAAATGTGGAAATTGGTGATTCCGGTGTGAAAGTGCACCGTAAAGCCATCAGGCTCGGCGATTCTCAG GCTAGGATCGAGTCCGGCGCATCCAAGCTCCGTGGATGCTATCGTGCGCTTCTGCCATTTTTGGTCGCGGTCTTACTCGT GCTTCACGCTCCTGCGTTCACTTGAAGTTGACCGTGACTTTTCTTTGTTTCTTAATCGTTGTTGTATGATTGTATGTATT GTACTGCATCCATCTACATATAGATTTACACGTTTTAGCTTCTTATTTTTTTGGTTAATTAGGAATTACACGATTTGTAT ATATTCTTAATTATTAATCTTTCTTTGGCATTATCAAGTATCTCACATGACACGCCAAAAAAATTTGAGAGTTAGAGCTT AGCTAAGTGCATAAATTCTCTCTATTCGCTCACCAATTGAATCTTTGAGTAAATGTTTAAGGAAACTTTTCGATCTACCA ATTATGCAGGAACTTGTTAGTGTTAATTATCAAGGAAAATAAACTTTTCTTTTCATTAAAATAAAAAACACATAATTGTT GTTTTTAATTATGTAACATTCAATTATTGAATGTCATGTAACATTCAATTATTGGATGTCACGGTAATTAAATTTTACAT TAGCATTGACATCGCATATGTCTCGGTGTTCGGATCAACATCTCGTGCCTCAATCGAGATATCTTATACCTCAGGTCATC ACTCATAGTGAAGGCGAGAGCTAGAGAACTATTGTTTCGATGTTTGGTTCAACATCCTGCGCCTCAATTGACACATCTTA TACCTCAGATCATCACTAATGAAAGCTAGAGCTAAGCAACTTTTGTTTCGATGGCTAAGCACCACACAATGTGGCCGAGG GTTTAGGGTTTAGGGCAAAACACAACCCTGATAACCAACTCATAGTCGTGTGGCCAAGGCCAGATGTAACTCCGAGGTAA AAGAGCATTTAAGGCAAGGCCTCATAGAGATCCAAGATTCAACACTAAGACAAAATAGGCCCGAAACATCAGGAAAAGGT TAGGCCCATACCCTAGACACATTTCTCGCCTAAAAGACTCCTTGCTCACGAAAAGAATTAAACCCGAGGAGGCGAACTAG GCGCAAAGTAGAGACAGGGCAGGAGGAGCATAACGTTGATCTAACCATCCATCTCTTGGATGATGGGACAACTCATCAAA AGAATCCAACGATCAACTCAAAACCACGCATACAACGACATAAACGTCTCCTAGGGCCTCTCCGACCTCACCCTTATTAA TACCCCCAAGAGGAAGCCAACATAACTCTCTAGCCAATTTTCTCATACTCTCGTCCTTTAGATAGTGTCTTGAGCGTTAG AGTGTCTTCACATGTACCATCCCCGACAAGTCCACGGTGCACGAAGGAGGAGAACTTGGATTTATGTCGTGACTGAAAAA GAAACACCATGATGGAAATACAACTCAACGGAGGAAGAGAACCCAAAGAAGAACTAAGTCCATGAAGATCGACCAAGTTC ATGAAGACAAGCATTGAGGCGTTCACCAGTTCGCGAAATCACTAACACATATTTAGGTGATTGATTAGATTCCATCTGAT CACTAGCGTTGTCTATCGGAACTGGAAAATACATCTGCATCCACGTATGGGTGAGACAAAAGGAGGAGTAATAAGTAGCT GATCTGAGACAGAGGATAGCCAAGAAATCCAAACCAACGAGGAGATGGCCCACCCCTCTCAACAGGTTTGAACTCCCCTT CAGCGAGGCGTTGCATGATAAACTCAACAGCCTTCGGATCGGGTCCCGAATTCCATGCGGCGAGCCCCTCTAGTCCACCA CCAAATATTCGAGAGGGGGGGGGGGGACTTGTTGTGCCATTTTCATGTCTCCCTAAGTAGAGTGTTATTTACTATAAACG TGACATTTTCTATCCAATTTCATCACATCGATTGATTTATTTCTGAACCAACATTGAGGTATGTAGGTCGAGAGATTCAT GTTGTGATTGTAGCTAATGTGAACAAGTGGTCATACTTTGAAGCTATAGGAATTACGAAGGAAGTGTTTGGATACAAAGG TAATGTGATGGTGGAAAACTAGAGCCATGTTTCGAGGATGCTTAAGGGGAATTTTATTCGATACATGTTATTGAAACAAC AAATTATGCATGGAATAAAGGAAGTGCAGTGGATGTGTATGTAGAACATGATATTAGCCGTGCATAAATTGTTGTCCCTA CACTGACATTCATTGAGGAGACCAGGGATGAAAATTGAGACAATTGTGATAAAGAGGAAGAGTGATCAATAATGATAAAA TATGCAGGGTGTACAGTTTGATGATAGTGAGGAAGATAGATGCAAGGGTCTTGATGATGAGTTTTACATTCCTACACAAC CAAGTTTCAAAAATCCACGACCAAGTAATGACATTGCACAACTTGTTGACCCTAAACATGCAATTGTTAACCCTCAAAGT GAAAAAAAATGGAAGTTTATGGTAAAAAGTGTACCTTCCAAACCCAT
CDS sequence (LotjaGi3g1v0236000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGCGGAATCCGACAACTGCTGCTCCCGCTGTTTGGGCTTCATAACAACCATGGGCCTCGCCGCCCTATTCATATG GCTGAGCCTCCGAGTCGACGAACCCAAATGCTACATCGACTACATTTACATTCCTGCCCTCAACAAAACCCTAAATTCCC CTTTCACAACAAACTCCACTCTCAACTTCACCCTCAAGCTCGTCAACCCCAACAAGGACAAGGGCATCAAATACGACGCC GTTCGCCTCCGCTTCGCCATCTTCGTCGACCACAACACCACCCGCCCCATCGGCAACGCCACCGTCGGGGGATTCTACCA GGGCCACGAGAAGAAGGCCCGCAAGCCCGGATCCCTCAACGCCGCCGCCGGAAACCTCACGGCGAAGGTCGACGGGAAGA TGTACTTCCGCGTGGAGTTTGATACGGCGGTGAAGTACAAGATCTCGCTGTGGTACACGAAGAAGAGGGACTTGTTGTGG GGAGGGGCAAATGTGGAAATTGGTGATTCCGGTGTGAAAGTGCACCGTAAAGCCATCAGGCTCGGCGATTCTCAGGCTAG GATCGAGTCCGGCGCATCCAAGCTCCGTGGATGCTATCGTGCGCTTCTGCCATTTTTGGTCGCGGTCTTACTCGTGCTTC ACGCTCCTGCGTTCACTTGA
Protein sequence (LotjaGi3g1v0236000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAESDNCCSRCLGFITTMGLAALFIWLSLRVDEPKCYIDYIYIPALNKTLNSPFTTNSTLNFTLKLVNPNKDKGIKYDA VRLRFAIFVDHNTTRPIGNATVGGFYQGHEKKARKPGSLNAAAGNLTAKVDGKMYFRVEFDTAVKYKISLWYTKKRDLLW GGANVEIGDSGVKVHRKAIRLGDSQARIESGASKLRGCYRALLPFLVAVLLVLHAPAFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 210 | 210 | 8.1E-87 | – | |
| PANTHER | 1 | 210 | 210 | 8.1E-87 | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| Phobius | 31 | 196 | 166 | - | – | |
| Phobius | 197 | 218 | 22 | - | – | |
| TMHMM | 201 | 218 | 18 | - | – | |
| Phobius | 219 | 219 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0236000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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