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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0237900 |
| Transcript ID | LotjaGi3g1v0237900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox leucine zipper protein; TAIR: AT4G04890.1 protodermal factor 2; Swiss-Prot: sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2; TrEMBL-Plants: tr|K7M2H9|K7M2H9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0237900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38227066..38233460) extracted from Lotus japonicus Gifu genome v1.2.
AATTCATTCACAATAATGAGAGTCTTCACTAGGAATGAATAATGATGGCTTTGGAATGTAACGCTCACTAGTGTCACGTA ATCACCCTTCAGCAACTTTCAGTTTTAATCACCGACTCAACCAGGTGCAGGTAACATGTGACCTTTTTTTTCCTTCATCT TGATTACTCTTCACACATACCCCTTCACAAATTTTATCGTGGTCTAGTTTGTCACAACCTTTTCATTCATTCAAAATTTA GATTCAAAGAGAAAGGAAAAGTTCGTCTAGCACTATGGGAGATGTAGCTATGCCGGATAGTGAAGCAGATCACTCTGATG AGATTAACAAGGTAAATTAAATTCTGTGATTGAAATAAGTCATATAGCCTGCATTAATCAATGGCTTTGTGATTGGTGAT ATGCGTACCCTGCAATTATTGTTACGAAATCCCTAAATTCAAGTGATTTGGACCTAATTGCTAGGAGAAACTAAACTTTG AGTTAGCTAATCACGTTAATTATATCGATTTTATTTTTGGTTACAATTGTATCGAATTTGAGATTGGATATTCTCTCCAA AATTCTGATTAACCATTCCAAATTATATTAAATTCTTTTTGGTGGCTGGATCGTGACATTGTCATTCATGTCACTGTATG ATCCTCGTATTTTTAGATCCTCATATGTATTAATGTATGCACTAAATTTAATTTCATTCTCAGTACACAAGTGAAGTTTA CCCCATAGATTTTGTGTTCATCTTAATTTTTTTTTTCTCTTAATCAGGGTTTAGTTTATTGTTGATGGTGATTTGGGAAT TAATTCTTCCATATCACATGACATTATTTTATCACAGTTTATCTATATAGTAATCATAAATACTCATGGAGTCACAATTT CAAATGATAAATTTATCAGCTATGTGAAATTTAAAGTTGCAGATGTGTTTATATGTCCGCTAATCCTATTTGAGATTTGT GTGCTATCGGAAAGTTGCAATTTTTTTACTATGACTTTGCTTGCTATATGATGAAGTTAAGTGAAATTTTAATGAGAGCA TCTTTTGAAATCTGAACTATCTCTCATAGTACTTTGCACGTACTTATTGTCCAACTTGGTGACCGAATTAGAATTTGGCT TTTCTCTGCTGGTCGAAAAGCCAGAGACAAGGTGCGTGGCTGGTTTGGTTGGTTACTATTTCGTGTATTTGGAGCCTTAG GAATGCTTGCATTTTCAGAGGATTTGATTCATTTTAAGTCCTGGAATTGGATGAGAGGTGGATTCAAGGAATTTGCTTGC TCCCTTTATGAGTGGCAGCACCAACCTTTGCACTTCATTGCCCTGCTTTGATATTTTCTTTTAGTGGAGTGTGTCTCTGG ATTGTCTTCTGCAGTAGCAAGCTTGCTCCCGTTCCCCCTCTCTGATCTGCTTTGGGCTGTGGCTTTTGTCCAGCTTTTTC CTGTTTGTTTGTTTGTCTGTTTTCGCTGGTTGTAGCTGGGTATGGAAGCACGTTTTTGTGTCCTTCATGCCCCTTCTCTC TTTATTTATGGGTTGAGATACCCCTAGTATCTCTCTTTAATCTTTTAATTTGCTTATCCATAAAAAACTTTTGATATCTA AATTTCTAATCATACTGGCCAGTTACATTTGAACTGATAGCAGCGGTTAACAATCATTTATCGCAAAAGTTTAAAATGTT TGGTAAAAAGAACATGAATGATTTTATATTATATTTCTTACAACAGAATCTAAATCCATTTCTAATTGTTTTGACAAATT TGTCAATTGAGTTCCATTCTAAAATGTTTTAACCACTATACTAATTTTTATAATGTGTATATTTTGTTTACTAATTTCTC AGGTGGATACCTCACAAACCACCTATGGCAGTACTGGATCTCAAACATTGTCTTCTGAACAATCTGCAAGCGCTAATGCT ATCTCATCTGACCATTCATGTTCCACAAACCTCTCAGTGAGTTGTGGAGCAAACAACTCGAAACGAGCAACTGACCTTCT TTTTGGGATCTCAATGTATTCTGAGCAAACTAAGGCTGAGATCATTAATTCCGCGCGTTCAGCTGTGGATGAGTTGATAA AGATAGGCCTCGCAGGGAAACCTTTGTGGCAGCCCAAAAAAGAGAATAGTAGGTACGAGACACTAAACGATATCGAATAC CTGAGACAATTTGGTCAAGCTGACACAACACTGAGAGAGATCATGAAGTTGGTTGAGGTTGGAGAGCCTCAAAGTTTGCC AAGCTTTGATGCATACCATACTCAACATACAACATCAAAGGAAGCTCCAAGACCAGCTTTGAAAGTTGAATCTTCAAGAG ATATGGCATGTGTTAACATGACTCCAAAAAACATTACTGATCTGCTTATGGATGTGGTAGGTTATTAATTTCTTCTCTCT GTATAGTGAAATTTCAAGTAATTAACCATGAATTATCTCTCAATGGGCCTTTTTTTCCTTGGTTATTATTGATTAGAATC AATGGTCTGGAGTATTTCACAATATTGTCTCAAAGGCAGCGATCCTAGAAACCTTTACAGATGTAGTTGAAGGAAGCTAT GATGCAACATTGCATGTGGTAAGTTCACTATGTTTTCTTCTTGCAAGATCATTTTATTTGAAGCACTTAAAGGATAAATT TTCAGGTGCCTAAGTTGGTTGTATTAGTTAGTACGTGTATGTTGAGATTCAATCAATTTAAATTTCTATAGATTGATGGC CTCATGGATGAAATTAACAATTAACTAAATTTAGCCACTAGAAAAATCCCTATGAAAAGGTTATGTATCATTAATGTTTA TAATCAATGTACAAAAATAAATGCAGCTTGTCATTGGAATTTAAAAGTTAATTTACGTGTTCTTAATTTCATTGTATATG ATTTTTTGTTTTGTTTTGGTAGATGAGTGCAGAACTTCATTTGCCTACCCCTCTGGTACGCACACGGGAGTGTTATTTTG CAAGGTACTCCAAGCAGGTGTCTGATGAGAGGTGGGTGGTGGTTGATATGTCGTTGGAGAAGTTTTTTCCTTCTCCATCA AACAATTTTCACAAAAGACCATCAGGCTGTTTGATTGCAGGAATTCCTAATGGGACCTCCAAGGTGATTTTGTAATTCAT ATAGTATAGATTGATTCTGATTTCCAAATCAATTGTAGAAAAGTTTCAAACACACTCAATTTTATAAGAATAATAACTGT GCCTATCATTGACCAAGAAAAATATCCAGTACATTAATCAATAAAAAAACTTCATTGCAAATTTATTTTAACCTATATAT TAAAAGCAAGTTTTTTAAATATTTTAGACTATTACCTTTTGAAAAATGATAGTAGTACTCTTTTTTCCAGCACTCTCTCA TTAATTAATTAAAATTTAAGTAGGGTCTACTAAAAATATGAGACTCACATGAATTTTAACTAATTAATGAAAGACCGTTG TAATTAGTATTTGAAAGGGAATGTTGTCAGAATTCCTTATATAATTTAGGTGAGTGTTAGCAACACTCACTTTAACACTC ATTTTCAACATTTTCATATGAGTCATATAGAATTGAAAATGAGACTCATATTTTTAATGACGGACATGAGTTTCAACAAA TTAGTAGGAAAGAGAGGGTTAAAATTAGTGTTGATATCATGTTTCTACCTTATATAAAAAGATGATGCACATGTGGAGCG ATTGCTTATCTAAAAAAACATGTGGAGAGATTTTTAGCATGATCTTGTTGAGTTTCTGATTTGTCTAACATTCAAAATTA CCTCAGGTTATATGGGTGGAGCATGTGGAAGCAGACCATAGCCAATTGCATGATCTTTTCAAGCCTCTAGTCGCCTCTGG TTTGGCTTTTGGTGCAACGCGGTGGCTTGCTTCCCTAGTTCGCCACAGTAAATGGTCTGAAACCCTTAATGCACCAGTAC TGTTTGCAGAGAAAGGGGGTACATCTACTGCACTTTCTCCTTTAAAATTTCCAAAAACAGAGTCATTTTTTTGAGAAGTT AAATAATAACTTAGTTAATTCCTTTTATGTATATTAAAGTTGGATTTGGATTTATTGTAGTTGACTGCATATTGCTGCCG TCACAAATATAGTATGTTTGATTATGATTGGACAGATCATGTTTTTAAAATGTAATGACTATATTTGTGAGTGCAGTAAT TGCGTCAAAACATGATGGGTGAATCCAGCCATGAATTCAGATTTATTGCAATATAGTATCCTACACTCACTAAAGCCAGA GATCTGAGTCTGTTAGATTAAAATGAGACCGCTCCAATTTTATTAGTTACTATGCATTTAGAAGTAACCTATTTGAACTA GAGTTGTCTGATTAAAGATCAAACAGTTATAGATTCCTTCTGTCAATGAATGCAGATCCTCCTACTGCAGGAATTTGAGC CCCCACCTATACGCATTTGGATTCCTTACACTCGGTTTTCTTGAATTCACTACAGTTGCATTTAATGTTTTGTAACCGTT TGATGAAAATTGGACGAACGACTAACATTTAAAATTATAATTTCGAGTGTATAACCATATATTTAAATATGAGTCGTCTA ATTTTAATAGTGTGACATGCAACTAATGATTGTTGTTTGTTTTGATGCAAGCAGTTCGCATACCTCAGTCTGGGAGGACA ACTTTGTTAAAACTAACGGATAGAATGATGAGAACCTTTTGTCGCAATGTGAGTGCTACTGCAAGCAATCAATGGATGCA AATGACTTCATTTCCTGGTTGTGAGGATGTGAGAGTGATGATCAAGAATAATCCGGAGGGTATCCCTATGTTTGGGAGAA CATCGCTGGTTTTCACTACTTCTCTTCGTCTTGAAGTCTCCCCAAACCGATTATTTACCTTCCTTCGTCATGAGGATTCT AGAAAGAAGGTATGCTCAATAAATAATTTCAACGATTTAATTAGTATTTTTGTGTGTTTGTATGGATTGAAATTCTCTCA TGTGATTATCATCTAAAATTTTGTATCTATATTTTTGTTTAAAAATAGTTAGGGATCCAACTTATTTTATGAACATAAAG AGAAAGTGAGTGAATTTTTTTTGAGTGAATCTTGACTCTTGAGAAAATTTATAGGACAAGCAATTAGGAGGTTTATGTTG GTTTTGAAATATATGTAAAACAGTTATAGAAACAAAATATTAATGGAAATTCAAAAAACTGATGGACTTCAATTTGTTAT ATGTAATTTAGGCTTTGAAAAGATGAAACTAAGATTAATTTTATTTTTAGAGAAGTTTGATGTTTTGGTTGGTAAATTTT GAGTGCATGAATGTTCAAATGATATAAAAAAAATTAATTTATAAAATTTAGTAGAAAATATGAGTTTAAGAGTTTTAAGT AGAAAGTAAATAAAGAAAAGATCCATTTAAATTGTAACAAATTAAAAAAATTACTGGGTACTAAATTTCACATTAACTAC ATTAAAGGCACTGAAAAATGATAATACATCTGGGTCTCGTACCATTTTAAATTAACATTTTACATTGTTTACTTTTTGTT GAATAACAGTGGGATATGCTTTCTCAAAATCTTACTACCGAACAGTTTGCCTACATTATCAAGGGAGAAAATGCAGGGAA CCGAGCTTCCTTGCTGCGCGCAATTGTAAGCTCCTAATTTTATCTTCATTTAATTAGTGTATGTTTGAAAATTCTCATGG AATTAATTCTAAAATCAAAATCAATGACGAGAACTTTCTGTCAGCGGTTTCTGAGTGCCGTAATTAATTCTGTAGAAAAA ACTTACCATTCAAACATGCTACAACTCACTTACACAACTTGCTTTGTTTATGGCATTCTTAGACTCCCAGGGGCAGGACT GACATCTTTTATGTGCAAGAGAGTTACACAGACTCATCATGCTCGTATGTGATTTACGCGCCGCTAGACGAGTGGGCTCT GCAAGGTATTGCAAATGGAATCAACCCTGACATTGTGATTGTTCTTCCATCAGGGTTTTCTATTCTTCCTGCAGGACAAG ATCATGAAGGAAAAGACAATGCAAGTCTTCTAACAATTGCATTCAATCTCATTGATAATGAGGCTACTGAGTCATGTATT CCTCCTCAATCGGTTGAAACCTATTATGGCATTATTACAGACACTGTTACCTCTATCAAGGACGCAGTGCAGTATAATAA TCGACTCAACAATTGGATTGGAGATTGAAATTTCAAGTGAAAGCTTCGAGCTAGTCCTGGTTGTCCTGGATGTAGCAAAA TGTGATGTAGATTGTAGTTGGAAGTTTGTGTACTCATTAACTATCTTATTTGAAGCTGTTGGGATCATTGTATTTTTTGA AAACAGGTTGTGATAGACAGGTTTTTCCGTTTTAAAAAAACGTATTCAAATAGTTTTTGAATACTTTGGTGTCGC
CDS sequence (LotjaGi3g1v0237900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATGTAGCTATGCCGGATAGTGAAGCAGATCACTCTGATGAGATTAACAAGGTGGATACCTCACAAACCACCTA TGGCAGTACTGGATCTCAAACATTGTCTTCTGAACAATCTGCAAGCGCTAATGCTATCTCATCTGACCATTCATGTTCCA CAAACCTCTCAGTGAGTTGTGGAGCAAACAACTCGAAACGAGCAACTGACCTTCTTTTTGGGATCTCAATGTATTCTGAG CAAACTAAGGCTGAGATCATTAATTCCGCGCGTTCAGCTGTGGATGAGTTGATAAAGATAGGCCTCGCAGGGAAACCTTT GTGGCAGCCCAAAAAAGAGAATAGTAGGTACGAGACACTAAACGATATCGAATACCTGAGACAATTTGGTCAAGCTGACA CAACACTGAGAGAGATCATGAAGTTGGTTGAGGTTGGAGAGCCTCAAAGTTTGCCAAGCTTTGATGCATACCATACTCAA CATACAACATCAAAGGAAGCTCCAAGACCAGCTTTGAAAGTTGAATCTTCAAGAGATATGGCATGTGTTAACATGACTCC AAAAAACATTACTGATCTGCTTATGGATGTGAATCAATGGTCTGGAGTATTTCACAATATTGTCTCAAAGGCAGCGATCC TAGAAACCTTTACAGATGTAGTTGAAGGAAGCTATGATGCAACATTGCATGTGATGAGTGCAGAACTTCATTTGCCTACC CCTCTGGTACGCACACGGGAGTGTTATTTTGCAAGGTACTCCAAGCAGGTGTCTGATGAGAGGTGGGTGGTGGTTGATAT GTCGTTGGAGAAGTTTTTTCCTTCTCCATCAAACAATTTTCACAAAAGACCATCAGGCTGTTTGATTGCAGGAATTCCTA ATGGGACCTCCAAGGTTATATGGGTGGAGCATGTGGAAGCAGACCATAGCCAATTGCATGATCTTTTCAAGCCTCTAGTC GCCTCTGGTTTGGCTTTTGGTGCAACGCGGTGGCTTGCTTCCCTAGTTCGCCACAGTAAATGGTCTGAAACCCTTAATGC ACCAGTACTGTTTGCAGAGAAAGGGGTTCGCATACCTCAGTCTGGGAGGACAACTTTGTTAAAACTAACGGATAGAATGA TGAGAACCTTTTGTCGCAATGTGAGTGCTACTGCAAGCAATCAATGGATGCAAATGACTTCATTTCCTGGTTGTGAGGAT GTGAGAGTGATGATCAAGAATAATCCGGAGGGTATCCCTATGTTTGGGAGAACATCGCTGGTTTTCACTACTTCTCTTCG TCTTGAAGTCTCCCCAAACCGATTATTTACCTTCCTTCGTCATGAGGATTCTAGAAAGAAGTGGGATATGCTTTCTCAAA ATCTTACTACCGAACAGTTTGCCTACATTATCAAGGGAGAAAATGCAGGGAACCGAGCTTCCTTGCTGCGCGCAATTACT CCCAGGGGCAGGACTGACATCTTTTATGTGCAAGAGAGTTACACAGACTCATCATGCTCGTATGTGATTTACGCGCCGCT AGACGAGTGGGCTCTGCAAGGTATTGCAAATGGAATCAACCCTGACATTGTGATTGTTCTTCCATCAGGGTTTTCTATTC TTCCTGCAGGACAAGATCATGAAGGAAAAGACAATGCAAGTCTTCTAACAATTGCATTCAATCTCATTGATAATGAGGCT ACTGAGTCATGTATTCCTCCTCAATCGGTTGAAACCTATTATGGCATTATTACAGACACTGTTACCTCTATCAAGGACGC AGTGCAGTATAATAATCGACTCAACAATTGGATTGGAGATTGA
Protein sequence (LotjaGi3g1v0237900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDVAMPDSEADHSDEINKVDTSQTTYGSTGSQTLSSEQSASANAISSDHSCSTNLSVSCGANNSKRATDLLFGISMYSE QTKAEIINSARSAVDELIKIGLAGKPLWQPKKENSRYETLNDIEYLRQFGQADTTLREIMKLVEVGEPQSLPSFDAYHTQ HTTSKEAPRPALKVESSRDMACVNMTPKNITDLLMDVNQWSGVFHNIVSKAAILETFTDVVEGSYDATLHVMSAELHLPT PLVRTRECYFARYSKQVSDERWVVVDMSLEKFFPSPSNNFHKRPSGCLIAGIPNGTSKVIWVEHVEADHSQLHDLFKPLV ASGLAFGATRWLASLVRHSKWSETLNAPVLFAEKGVRIPQSGRTTLLKLTDRMMRTFCRNVSATASNQWMQMTSFPGCED VRVMIKNNPEGIPMFGRTSLVFTTSLRLEVSPNRLFTFLRHEDSRKKWDMLSQNLTTEQFAYIIKGENAGNRASLLRAIT PRGRTDIFYVQESYTDSSCSYVIYAPLDEWALQGIANGINPDIVIVLPSGFSILPAGQDHEGKDNASLLTIAFNLIDNEA TESCIPPQSVETYYGIITDTVTSIKDAVQYNNRLNNWIGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 42 | 42 | - | – | |
| MobiDBLite | 20 | 42 | 23 | - | – | |
| PANTHER | 61 | 539 | 479 | 1.3E-159 | ||
| PANTHER | 61 | 539 | 479 | 1.3E-159 | – | |
| ProSiteProfiles | 79 | 344 | 266 | 31.17 | ||
| CDD | 83 | 339 | 257 | 3.52246E-76 | – | |
| SMART | 131 | 341 | 211 | 4.0E-13 | ||
| Pfam | 160 | 339 | 180 | 1.8E-26 | ||
| SUPERFAMILY | 174 | 340 | 167 | 1.29E-23 | – | |
| SUPERFAMILY | 363 | 539 | 177 | 2.47E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0237900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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