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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0239000 |
| Transcript ID | LotjaGi3g1v0239000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT3G58710.2 WRKY DNA-binding protein 69; Swiss-Prot: sp|Q93WV5|WRK69_ARATH Probable WRKY transcription factor 69; TrEMBL-Plants: tr|I1LUP5|I1LUP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0239000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38529538..38533426) extracted from Lotus japonicus Gifu genome v1.2.
TGAATCCAAAGCTTATAGTTTATCATGAACCCTACTCCATCAAATAAATCCCTTCCATGAAATGTTTATTAAATGTGTTA TTTGCTCGCACGTTCACAATAAACTACACTGATGCCAATCTGTCACCATGGCGGCTCATATTAAACACCTACCCCAACCC CTTCTTCTCTCTCACTCCTCCCACTCTCACCTCATCACCATAACCACCTCAAAACCCACCCCCCTTCATTTTCCGGCCAG CCCTCACACCCCACCACCATTTCCACCACCACCACCATCATCAACCACCTAGATCACCACCATGTACCACCGTAGATTCA AAATCAACACCCGGCAATTATACGCCTCTGACAGCCCAAATGACCTTGAGCCCGAGCCCATCTCTGAGCCCGGGCCCGCT TCACCTTCTTCCGGTGAAGACATAAAAACTGAAGCACCATCTCCCAAGAAAAGGTTTCACCTTATTTTTTTTTTTCCTTT TTTAAGATTTTTTTTTTTATTTTGGGAAGTTAAGGTGGTTAACCGTTGGAGAGTTATTCATGATACTACTATACGTGTAG GAGGGAGATGAAGAAGAGGGTGGTGACTTTACCAATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACATATCCAC CGTCCGATTCATGGGCCTGGAGAAAGTACGGTCAGAAGCCCATCAAAGGTTCCCCTTATCCCAGGTACACATTCCTAATT CCTTAATTGCTTTTCTTAATCATCATCATTTTCTAGATTTATTAAACCATGGAGAATTAGCTTAATTTAAGATCATCATT TGATGTTAAATTTGGTAGTGGAATAGTAACTTAATTTAGAAGTTCATGGCGGAGGATGGAGGAGAATTGGGCCGCGGCGG CTGCCGGAAAAAAACCGGCAGCTGTGCTAAAATGCGCATGGGGTGGTAGTTAAGAGCTTAGGTTGTTGTAATGGCATACG CGGGGTGTGAACCGCGTTGCCGTCACGCCATGAATGATTAAGGGAATATAAAAATCTGGAGCCGGCGAGGAAGTCATTAT CATGGATTGTTTGTTTGATATTTTTGTTTGTGAATGGAAAATTTGTCTCAATTATTTGATGCGTATTTCAATGATCTGTA TGCTGAAGTTACAAATTTAACCATGATGTTAAGCGTGTTTTATGGGATTCACGAGATAAACAAAGTTATCATATGTGATT GTTGTGTGTGTTTTACACTTTTACGTGTAATATTGCGTTTATCAATGCAGGTTGCCTGCATTATCAATCAAATTAGGGCA TAGTTGAAACTTATTTGCCAACAAAATATCAATTGTGAATCAAATCACATTAGGACATAGTTGCCGCTTATAAATGTATA AGAAAATGAGATATATGTAGAAAGGGGGGAAAAATACTAAAACCATTTGAACCAAATTTTATTATTGCTTTAAATTTTAC AAAATCATTTTGTGGTAAAAGTTATTTGTGATTTTTTTAATATTTCGATTTGGACGTGGTGAAGGTAAAAAATATCTCTA AGAATGTAGTTGTTGTTTTCAGTTATTAAACTTTCAATCTAAAAGTTCAAACAATTATTATTTTACTACCGTTGGGCTGT GAAATTTTATTTTGATAGTAAAAACAATATTGAAGAAAAAAAGTATTCAATAATAAAAAATGTATAATAGATGACACTTT GTAATAAAAATATTTGTAATAAATTATCATTACAATTATTTGACACTCAATCCTCTTCATATTTAATTAAATGATGTTCT TTCAAACAAAACAAAAATTAAATGATGTTGCTTATACCCTTATAAAAAAGAACATTATACTTTTCAGTAGTACTAAATTA CAAATTATATACGTTCAAAAAAAAATTACAAATTATATAAAATATTCAAAAAAAAAAACATTACAATTATATAAATGTAT TTTAGAGGATAATATTACATATCCAAGAAATACATAGAAGGATAGCTAAAGTGGTAAGAACTATGAACATCAGAATTGAA CAAGAGTAAAGGGTGAAGGGTCTCGGGTTCGAACCCGAATGATGGATTAATTTACTAACATTTCTAACAACTAACATTTA CAATCCATTAAATAAAAAAGTGTCATTTTCCCTTGTTTTGGATTATGATCCCAATCCACATCACTCTTGTTTATTTTAAC ATTTTCTATGGCCATTTTTTCTCTTGATTACAATTTTTAATTAATTTCTTAATTTGAATATTGAAATACAGGGGATACTA CCGATGCAGCAGTTCAAAGGGATGCCCCGCAAGGAAGCAAGTTGAAAGAAGCCGCGTGGACCCCACAAAGCTCATGGTCA CCTACTCCTACGAACACAACCACTCCCTCCCCGTTCCCAAATCACATTCCTCCGCCGCCTCCGCCACCGCAACCACCTCC AGCGACGGCGCTGCTGACACTCCCGCCACGCCTACCGAGTCCACCGCCATGTTGCCGCCGGAGGAGGATCTGACGGTTTT CGCCACGCATCCCGATCTGGAATTCACCGGCGACTCGGCGGTTCTGCTCGGCCACCACCACCACCACGCAGATTTCGGGT GGTTCGACGACGTGGCCTCCACCGGCGTTCTTGAAAGTCCGATCTGCGACGAGGTGGAGGATGTGATGCTAACGATGAGG GAGGAAGACGAGTCGCTGTTTGCCGATCTCGGCGAGTTGCCGGAGTGTTCGGCGGTTTTCCGGCGAAGGAATATTCTGAG CACCAGCACGATACAGTGTGATGGCATCACAGGATAACACGGCTGGACCGTTTTCTTGTGTCCAGCGTTGCATAAGATGA TACTCCCTCCGGTCCCATTTATAAGCATGAAAGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGA GCTATATTAATTATTTTTTTCCAATGATGCCCTTATTAATTCTAGCTTGTAAAATGTGTCTCATTAATTATTCTCTCTCT TTCCCACTTTCCAACACTAATAACAAAGGGTAATTTTGGAAGTTTATTTTGATTCAAGACATATTTAATGCATTTTATCT AGTTTAACTACATTTCTTAAACTATGTGATTTTTTTTTTGCTGCTTATAAATAGGACCGGAGGGAGTATAATATTCACCG CCTGAAAATCGTGCGCCATTAAAAAAATTGAAACGTAAAGAAATAATTAAAAAGTTATTTTATAATTCAAGTTTTTTTTT TTCCTTTCACTCTTTGCTTTGTACATTTGAATAAATAATTAGTAGTTGCTAGCAGGACCATTTCTGCAGAATTGATCCGT TAGGTCCAATGATTCCATTCTTCTAGTTTTGTATTTTGTACATTTGAATCACTCACATGCACCGCAATAGTGAAATTTTA CCATTAATCCACCATCGTTCATATGTTCTAATATTGAAAATTCCTATTTTGCCCCGAGAAACCCAAATATATGTGTTTTA GTGTGTTTGATTTTGTGTTTTCTTCCAAGATCTACTTGCAGGGCCGGCTCAAGGGTAATGTCACTCACGCAATCAAGTTT TTTTTTACTAAATCAAACGGCCTTGAAATTTTTTTTACTAAATATTTTTGGGTTCTTTTAGTTTACACAAGAAAATCCTT TTGTAAGGTTGCACCACCCTAGATTTACCTGTTGTAGTAGGTTACTTTCCAGGTTAATTTTTTTTAACTAATTATTTAAT CTGGTTTAACATTATCTAATATAGTTTCACCAAAAAACAAAAAAAAACCACCACCACCTTCTTATCGATTCTGACCGAAG AGAGAGGAGAGGAGGAAAATAAGAAAGTGGCGGCGCCGGCGGTGGGATGAGAGGTGGCGGCGGCGGCGTCGACGATATCT CTGCATCTTCGTTTCCTTCCAATCTTAGGTTTTGGTGGTGTAAGATCAA
CDS sequence (LotjaGi3g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCACCGTAGATTCAAAATCAACACCCGGCAATTATACGCCTCTGACAGCCCAAATGACCTTGAGCCCGAGCCCAT CTCTGAGCCCGGGCCCGCTTCACCTTCTTCCGGTGAAGACATAAAAACTGAAGCACCATCTCCCAAGAAAAGGAGGGAGA TGAAGAAGAGGGTGGTGACTTTACCAATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACATATCCACCGTCCGAT TCATGGGCCTGGAGAAAGTACGGTCAGAAGCCCATCAAAGGTTCCCCTTATCCCAGGGGATACTACCGATGCAGCAGTTC AAAGGGATGCCCCGCAAGGAAGCAAGTTGAAAGAAGCCGCGTGGACCCCACAAAGCTCATGGTCACCTACTCCTACGAAC ACAACCACTCCCTCCCCGTTCCCAAATCACATTCCTCCGCCGCCTCCGCCACCGCAACCACCTCCAGCGACGGCGCTGCT GACACTCCCGCCACGCCTACCGAGTCCACCGCCATGTTGCCGCCGGAGGAGGATCTGACGGTTTTCGCCACGCATCCCGA TCTGGAATTCACCGGCGACTCGGCGGTTCTGCTCGGCCACCACCACCACCACGCAGATTTCGGGTGGTTCGACGACGTGG CCTCCACCGGCGTTCTTGAAAGTCCGATCTGCGACGAGGTGGAGGATGTGATGCTAACGATGAGGGAGGAAGACGAGTCG CTGTTTGCCGATCTCGGCGAGTTGCCGGAGTGTTCGGCGGTTTTCCGGCGAAGGAATATTCTGAGCACCAGCACGATACA GTGTGATGGCATCACAGGATAA
Protein sequence (LotjaGi3g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYHRRFKINTRQLYASDSPNDLEPEPISEPGPASPSSGEDIKTEAPSPKKRREMKKRVVTLPIGDVDGSKSKGETYPPSD SWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLMVTYSYEHNHSLPVPKSHSSAASATATTSSDGAA DTPATPTESTAMLPPEEDLTVFATHPDLEFTGDSAVLLGHHHHHADFGWFDDVASTGVLESPICDEVEDVMLTMREEDES LFADLGELPECSAVFRRRNILSTSTIQCDGITG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 78 | 78 | - | – | |
| PANTHER | 21 | 260 | 240 | 1.0E-84 | – | |
| PANTHER | 21 | 260 | 240 | 1.0E-84 | – | |
| Gene3D | 65 | 140 | 76 | 6.3E-28 | ||
| SUPERFAMILY | 74 | 139 | 66 | 2.48E-25 | ||
| SMART | 78 | 138 | 61 | 5.9E-35 | ||
| ProSiteProfiles | 79 | 139 | 61 | 31.548 | ||
| Pfam | 80 | 136 | 57 | 6.4E-25 | ||
| MobiDBLite | 137 | 174 | 38 | - | – | |
| MobiDBLite | 137 | 169 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0239000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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