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LotjaGi3g1v0241200.6

Overview

Field Value
Gene ID LotjaGi3g1v0241200
Transcript ID LotjaGi3g1v0241200.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Phosphoenolpyruvate carboxylase; TAIR: AT3G14940.1 phosphoenolpyruvate carboxylase 3; Swiss-Prot: sp|P16097|CAPP2_MESCR Phosphoenolpyruvate carboxylase 2; TrEMBL-Plants: tr|Q6Q2Z8|Q6Q2Z8_SOYBN Phosphoenolpyruvate carboxylase; Found in the gene: LotjaGi3g1v0241200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:39154343..39156592) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCCCCTGAATGTTGTGGTCTGTGTCTCTGGCGATTTTACTTTGTTTTTTTTTGTCCCACACTCCCACCACATATTTG AACTTGTGGCTGAAAGTTTCTGTAATTTGATGATTTTTAGGTTCAAGATTGTTATGAGCTGTCAGCTGAGTATGAAGGGA ATTATAAGCCTGAGAAATTGGAGGAACTTGGGAACATGCTGACTGGTCTTGATGCAGGGGATTCTATTGTCATTGCCAAG TCGTTTTCTCACATGCTTAATTTGGCCAACTTGGCAGAAGAAGTTCAGATTGCTTACAGGAGAAGGATCAAGTTATTAAA GAAAGGTGATTTTGCTGATGAGAACTCTGCCATAACTGAGTCTGATATTGAAGAGACTTTCAAGAAGCTTGTGACTGAAC TGAAGAAGACCCCTCTGGAAGTCTTTGATGCTTTGAAGAACCAAACTGTAGACTTAGTCCTAACTGCCCATCCTACTCAG TCAGTTCGCAGATCTTTGCTGCAAAAGCATGGAAGGTTTGTCAATCTCCAATACCTCAATCAGTATTTTTCTGTCATTAC TGGAAATGCATGTTCTGTATAGACAGGAAATGCTGTATACTATTTCTGGAATTGCTACAATTTCTGCACTGAACCTTGTT AGTAATCATTGTCTTCTTTTTCAGGATAAGGGATTGTTTATCCCAGTTGTATGCTAAAGATATTACACCAGATGATAAAC AGGAACTTGATGAGGCTCTACAAAGAGAGGTAAATTCTTGATTCCATATACAATATATGATGCTGTTAATCACATGCTTC ACCGTCCAGATGATTCTCTGGATTGATTCTTATTTTACCAATTTACCTATAGTGTCTAGTGATTTATGAACTTCTTGATT GAGGGTATTTTTTACCGTAAGGATTTAGACATGAGTGCAGCCCGTGAGCATCACAGGCGCGTAGAGAAAATACCCAGCCA AACAAAAAAAAAAAATTAATTACAGGGAAAAAAAGATAGCACTGACATGTCATTCTCGCTGCAATTGTGCTTCCTGCCCA TCCGTGGACAGTTTTATTATATATGTACATCACATGACCAAATGATTCGGTTGATAATTGATAGCATTATTTTCTTTGCT TAGGCTAAAATTATCTGTTATATGAACTGCATGTCTACGCATATACTTGGCATTGAAGCAATTTGGTGCTATGAAAGTAT GGAGGATAGAGTTTATATTTTAACCTTTAATACTGTTTATGTCATGAGTTAGCTGTTAAACTCTAGGCATATTGATTTGG CTGTTTGGTTTAACTGTCTTTTCCCTCTTTGAATTAGATTAGATTTTTGTTGCCATTATTCTTTAACATATAAATGGCTT TTATGTTTATGAATTTTTTATTAGAGTTATATATGGCAATGTTTTGGTAAAGCTACAGCCCTAATAATGTTTTTCTCTTA CACAGATTCAAGCTGCATTTCGTACAGATGAAATTCGAAGGACTCCTCCTACACCACAAGATGAGATGAGGGCAGGAATG AGCTACTTTCATGAGACAATTTGGAAAGGAGTACCAAAGTTTTTGCGCCGGGTTGACACTGCTCTAAAAAACATTGGAAT AAATGAACGTGTCCCATATAATGCCCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGCGATGGTATCTTTCTCT TTCCTAAGAAATTACTGAATGAGAAAAAAAAAATCATAAATCAGATTTCTCTTTATTACAAAACCTTACTTCTGCCCCAA GTGTTTATGTGGTATAGATTTGAAATACCGAAGACACAGCTTGTAATATACTTTTTACTTGCTGTCTTACTATATGTCTA ATGTGCATTGTAGGTAATCCCAGAGTAACCCCTGAAGTCACAAGGGATGTGTGTTTGCTGGCAAGAATGATGGCTGCTAA TTTGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGGTATCAATTATGCTAGTTGCTTCCTTGATTATCTAGTTTCATA AAGCATTTAAGGGCATGGTTCTTAACTACTTGCTTTTGTCTGCTATGACAGTTGTCTATGTGGCGCTGCAGTGACGAGCT CCGTGTTCGAGCTCATGAACTTCATAGATCCTCAAAGAGAGATGCCAAACATTATATTGGTATGCATTATCTGAATTGCA CACTTCTTGAAATCTTTTAAGGAATTTAGAAAACTGAACAAAATCTAAAATCAGCATTGTGGAACTATCCATACATGTGG ATTTGTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0241200.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGACTGGTCTTGATGCAGGGGATTCTATTGTCATTGCCAAGTCGTTTTCTCACATGCTTAATTTGGCCAACTTGGC AGAAGAAGTTCAGATTGCTTACAGGAGAAGGATCAAGTTATTAAAGAAAGGTGATTTTGCTGATGAGAACTCTGCCATAA CTGAGTCTGATATTGAAGAGACTTTCAAGAAGCTTGTGACTGAACTGAAGAAGACCCCTCTGGAAGTCTTTGATGCTTTG AAGAACCAAACTGTAGACTTAGTCCTAACTGCCCATCCTACTCAGTCAGTTCGCAGATCTTTGCTGCAAAAGCATGGAAG GATAAGGGATTGTTTATCCCAGTTGTATGCTAAAGATATTACACCAGATGATAAACAGGAACTTGATGAGGCTCTACAAA GAGAGATTCAAGCTGCATTTCGTACAGATGAAATTCGAAGGACTCCTCCTACACCACAAGATGAGATGAGGGCAGGAATG AGCTACTTTCATGAGACAATTTGGAAAGGAGTACCAAAGTTTTTGCGCCGGGTTGACACTGCTCTAAAAAACATTGGAAT AAATGAACGTGTCCCATATAATGCCCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGCGATGGTAATCCCAGAG TAACCCCTGAAGTCACAAGGGATTTGTCTATGTGGCGCTGCAGTGACGAGCTCCGTGTTCGAGCTCATGAACTTCATAGA TCCTCAAAGAGAGATGCCAAACATTATATTGAAAACTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0241200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVTELKKTPLEVFDAL KNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGM SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDLSMWRCSDELRVRAHELHR SSKRDAKHYIEN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR30523:SF12
1 222 222 2.9E-162 –
PANTHER
PTHR30523
1 222 222 2.9E-162
IPR021135
SUPERFAMILY
SSF51621
2 250 249 2.51E-69
IPR015813
Pfam
PF00311
83 235 153 7.7E-52
IPR021135
PRINTS
PR00150
87 100 14 4.7E-26
IPR021135
ProSitePatterns
PS00781
88 99 12 -
IPR018129
PRINTS
PR00150
140 156 17 4.7E-26
IPR021135
PRINTS
PR00150
200 215 16 4.7E-26
IPR021135
PANTHER
PTHR30523:SF12
221 251 31 2.9E-162 –
PANTHER
PTHR30523
221 251 31 2.9E-162
IPR021135

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0008964
Molecular function Phosphoenolpyruvate carboxylase activity Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + HCO3-.
Subterm of
GO:0015977
Biological process Carbon fixation A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0241200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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