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LotjaGi3g1v0242300.1

Overview

Field Value
Gene ID LotjaGi3g1v0242300
Transcript ID LotjaGi3g1v0242300.1
Lotus japonicus genome version Gifu v1.2
Description NAC domain-containing protein; TAIR: AT4G28500.1 NAC domain containing protein 73; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A1J7GZT7|A0A1J7GZT7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:39386386..39390332) extracted from Lotus japonicus Gifu genome v1.2.

ATACACACCAAAATTCATTAGATAGAGGTACCTTTAGTAAGAGTAAAAGGGGCAAAAAAAAAAACATGTCCAAAAACAAT AAAGAACAAAAACCTACATTTATTCTTCCACAAGTTTTCATGCAAGTATTTATACAAAGCAGAACTAAACTTGAGATCAA AGCAAGCTCAATTTTTTATTATTCTCATCTCCCTGGACAACCAACCCTATGATCTCTCATTGTTTAATCTCATTCTCTAT TTAGATATTTTTTTAGTTATCTCTCTTCTTTCTCGTTATGTACAAGCAGAGGTTGGGGAAGTACTCCAAGTATTCGCTCA TGCAAAAGAGAGAGCACCAAAAAAGTGAATCGGGGGAATGTAATTCCTTCCCACACCTCAACAAGTAGTAGCATGAGGGG AGCAATCTTTAGAAGAGACAAGATTTCCTTTTACAACTTTTATTAATTATTACTACTTTAAATCACTCTCTTAGCTCAAC CTCTCTTACTTTGTCCCATCTTGGTCCATCTCTTCTAGTTTATGTTCCAAGTGTTTTTATAGCAACACCAGGAGAAACAA GGAAAAGAAGGTTTCCATAAATGGAATGAGTGAGAGGAAGAGAAGAGGAAAACAAGGAAATGACTCAGTGTAGCGACGAC CCTGAAATCAATAATAACATCATAATACAGGAGGGACGTAAGGATAGCTTAATCAGAACTTGCCCCACATGTGGTCATCA TATCAAATGCCAAGATCAGGTTCTTCATTATAAATCTTTTTTTTTGTTAATGACCATACATCAATACCCTTTTACTTAAC TTTATTTTGTGACATTAATCATCTTAATGCATATTTGGAATTTTTTTTCTTAATTGATTCTGAAACTAGAATCAATTCTA GAGAGAAGTTTATGTGAGTAACTTTAGAGTTTCATAATTGATTATGTGAAAAGCTGATTCAAAATGCTATTAGTATCTGA TAAATACTATATGGCATTAATTGACTAGGGTGGTGGAATTCATGACTTACCTGGATTGCCTGCGGGAGTGAAGTTTGATC CCACAGATCATGAGATTCTTGAACATTTGGAAGCGAAGGTGCGGTCTGATATTCATAAGCTTCATCCACTAATTGATGAG TTCATACCTACTCTTGAAGGTGAAAATGGAATCTGCTACACTCATCCGGAGAAGTTGCCAGGTTAATCACAATACATTAT TTGCTCTCAAATCCTGTTTGATATATATTTTTTTCCTATAACTGAAAATCCCCACACATGCATAGTAGTAGTACTTAAAT CAAACTTTGGCAAGGGGTGATATATAGTTTGATAAACAACATATTCAAAACCCTGATATTGAAAGCTCTCACACTCAAAT CATATTTGATTGATTACAATTTGTTCTCTCTTAATTTTGATGGTCTTATTCGTCTAATAAGTTACATTTTGATTTTAACT GCAAAATATATATATACTTTGATTACCACAAAAAATGACTTTATCCCAAGAAAAATCCATTTCACAAACTAAAAATTTCT CTACAAATTAATATGAACACATAAGAAACATATTATAAAAATATGTACTGAGCAATTAATATTTTACTTTATTTTATCCA AACAACTTTCATTTTTTAAAACATACTTTTACGTATATCAAACATAATTTTATCGAATTGTAATCTAAAAGACTCCACAA GTGCAAATCAGTTGATATAAATGATATTTTTGTATAAAAGAAAGAAATACATGATTAGTTTGAGTATAAGAGATACCAAC TAAGTTATAAGTTTATCAAAACAGAAGAAAAAAAATATTCCAAAAACTGTGTTTACCAAAAGTAAATTAAGATATCATCA TTCAAGCAAAATGTGCATATATTGTTTATAGATATCAGATATGTTGTGTGATACTTTAGGCTCGCAAAAATAGTTATAAA ATACCCACTAAATACCAACCATTAAAGATGTTCTAAGAGCTGATGTATTTAAACACTACTCAATACCCATACTAGTTAGA AAATAGATGCAAATTAGTTACTCATATAAGTTGGTTGCTAATTTCCTAACTAATTCATAGTTATTTAACTGCTAATTTGC AGGCAACATTTTTTCATGTAAAGACTATATATAAAGCCAAATTACGAACCTCATTACACATAATTACAAATCAAAGTTTA AAAGTTACAAACAATGTATTTATACACACTACCTTAGACAAAGCCAATACATAAATTACTTATTTAACTATATATTTTCT CCTATGTATGGTGAATGCAACACACATGAGAATGTTGATTCATTCAGATCACATTTTCTTGCCATCGCATTGTACCACCA GCAATTTTCTGTTCCTATATTTTTTTTATCAAATCACATCTCCCATTGCTCTCTCTCTCTATTTCTATGTAGATTTGGGG TGTCAACCAATCTTTTTCCTATAAGTTATGTTTATTATATATATCCCATGCAACATCTAATTGCTTTATTGCATTTGACT GTAGGAGTGAGCAAAGATGGCCTGATCCGTCATTTCTTTCACCGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAG GAGAAAGGTGCACTCTGATGACGAAGACGGCGGCGAGACCCGTTGGCACAAAACCGGTAAAACTAGACCAATCTACAACA ATGCCGAGTTGAAAGGTTACAAGAAAATCCTGGTGCTTTACACAAACTACGGAAAGCAAAGAAAGCCAGAAAAAACAAAC TGGGTCATGCACCAGTACCACCTAGGCACTGATGAAGAAGAGAAGGAAGGGGAGTTAGTCGTCTCCAAAGTTTTCTACCA AACACAACCTCGACAATGTGGGGCTTCTTTAGTGATCAAAGACCATATTAAGAAAGGTCAAAGCATGCATCATGAGGTGA ATATCAATAACAAAAGAAATAATGGGTTAGTTGAGTACTATCATTCAAATTTCATATCATTTGATCAAGGGAGCCAACAA CATAGATCCCATTTTCCGGTCCATGATGGTCCTTTCATTCCTTGAAAAAAGTGGTGGTGGAGAAGAAGATTGGAATTGAA GAGGTGGAGAAAATAGTAATTAATATATACTGAGGCATTAAGATAATATATTATGCAAGAATAAAATAAGTTAATAACTA ACTAATACTATATGTACCGTATGTCAAAAAAAAATATATGTACTGTAGTTAGAATGGGCAAAATTAAGGACAAAAAGTGT TTTATTTGAGAATTATTGCGCAGATATTTCTAGTAAGGGAGATAGTGTTTAGCAAACTACAGAGAATATTTAATTAATTA GCTGTAAAATTATTCTTTATTTTTTTCCTCCCTTTAATTTTTTTTAATGTAGTTTCTATCATGCTTTGTAAACGTAATTA CATATTTTTAATACTGATCTTTCAAAGAGTTTAGCCTACACTTTGTTAGTAAGTACTGTATAAAAACATTAAAAAAAGTG CAATGCAATGCCTATGTTTTGCTAGGGCTTTGTGGTACCTTGTGATATCGTAAAAAGTAACACAAGAAGGGGGGGTTTGA ATTGTGTTCAAATAAAACTTTAATTTTTTAAACGATTATAAGTTTATGAAATATTTTCGCAATCGTTTTAGCGGATATAA AAGCAAGAGAGTAGACGATATATAAGCACACAACAATATATCCTGATTCACCCACAAATGATGGGGCTACGTCCACTCCT TGGCTTAACCAAGATTTCCACTAAACAAGTGTCAAGGACTTCTCCTACACCAAGTATTAGACATGACTCCTCCCAACCAA GTATTCTACAGGACTTCTCCTAACAAGTATTAGACAACACTTCTCCCAACTTCAAGTATTGTTCAAGACTTCTCCTAAGA TCTTTTCCAAAATCGTTTGGCTCTATAGAGTTCTTTTCTCACAAGAGGTTTAGTAGAAATTACAAAACACGGGAACTACA AAGTTTTGAGTGAATTTGACTCTAGGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0242300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTCAGTGTAGCGACGACCCTGAAATCAATAATAACATCATAATACAGGAGGGACGTAAGGATAGCTTAATCAGAAC TTGCCCCACATGTGGTCATCATATCAAATGCCAAGATCAGGGTGGTGGAATTCATGACTTACCTGGATTGCCTGCGGGAG TGAAGTTTGATCCCACAGATCATGAGATTCTTGAACATTTGGAAGCGAAGGTGCGGTCTGATATTCATAAGCTTCATCCA CTAATTGATGAGTTCATACCTACTCTTGAAGGTGAAAATGGAATCTGCTACACTCATCCGGAGAAGTTGCCAGGAGTGAG CAAAGATGGCCTGATCCGTCATTTCTTTCACCGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGC ACTCTGATGACGAAGACGGCGGCGAGACCCGTTGGCACAAAACCGGTAAAACTAGACCAATCTACAACAATGCCGAGTTG AAAGGTTACAAGAAAATCCTGGTGCTTTACACAAACTACGGAAAGCAAAGAAAGCCAGAAAAAACAAACTGGGTCATGCA CCAGTACCACCTAGGCACTGATGAAGAAGAGAAGGAAGGGGAGTTAGTCGTCTCCAAAGTTTTCTACCAAACACAACCTC GACAATGTGGGGCTTCTTTAGTGATCAAAGACCATATTAAGAAAGGTCAAAGCATGCATCATGAGGTGAATATCAATAAC AAAAGAAATAATGGGTTAGTTGAGTACTATCATTCAAATTTCATATCATTTGATCAAGGGAGCCAACAACATAGATCCCA TTTTCCGGTCCATGATGGTCCTTTCATTCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0242300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTQCSDDPEINNNIIIQEGRKDSLIRTCPTCGHHIKCQDQGGGIHDLPGLPAGVKFDPTDHEILEHLEAKVRSDIHKLHP LIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDDEDGGETRWHKTGKTRPIYNNAEL KGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGTDEEEKEGELVVSKVFYQTQPRQCGASLVIKDHIKKGQSMHHEVNINN KRNNGLVEYYHSNFISFDQGSQQHRSHFPVHDGPFIP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31079:SF26
1 274 274 6.5E-147 –
PANTHER
PTHR31079
1 274 274 6.5E-147 –
SUPERFAMILY
SSF101941
45 210 166 8.63E-37
IPR036093
ProSiteProfiles
PS51005
50 210 161 32.416
IPR003441
Pfam
PF02365
51 191 141 8.5E-23
IPR003441
Gene3D
G3DSA:3.30.310.150
59 215 157 2.4E-24
IPR036093
MobiDBLite
mobidb-lite
123 149 27 - –
MobiDBLite
mobidb-lite
129 149 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0242300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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