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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0243300 |
| Transcript ID | LotjaGi3g1v0243300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G80960.1 F-box and Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9SAG4|FB93_ARATH F-box protein At1g80960; TrEMBL-Plants: tr|V7ALY9|V7ALY9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0243300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:39566085..39568278) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTTTCACGAAGAATGACAGAAAGGAAGAAAAGAAGCGATGAGGGTGACATGATCAGCCTTCTCCCGGATGAGATCT TGACCTATATCATCTCTTCTCTTTCTGTCGACGAGGCCGTGAGAACCAGCATCTTGTCAAAGACATGGAACCCCTTGTGG AGGAACTCTTCGTGCCTCGACTTTGATGGGACCCGCATGATCAAACGCCGCAATGTACACGCTGTTCGCAAATATGGTGA ACTCGTGAGCACCGTGCTGAACCGTCACCTTTGTGACTTGACCATGTGTCGCTTCAGGTACCTCTCTCCGAGCCTAAATG CTGAGGAATTGGCAGCTTTAGTTAAGTTCCTCGTGGAGAGAAACAAAAATTTGATTTCTCTTACCCTAGAGTGCATTAAG ACTAGACCATATTTTCCATCTGTTATGCTTAATTTCAAGTCTGGGATCTTTTCAAATCTGTGTTCACTCGAGCTTAACAA CTACTTGATGAGGAGGGTTAATGCATCTGCGTTTGAGGGATGTAAGAAATTGAAGACCTTGAAAATGAAGAAAATGATCA TGGAGGAGCAAGCTGTCAATGATGTTCTGGAAAACTGTTCCAGTTTGGAGAGGTTCATCCTGGTAGAGTCAACCGGGTTC AAGAAACTCAAGATTCGTAACCCGAGTCTCAACTTTTTGGAGCTCCGATGGTTGGTTGTGAATGAGATAGACGTTTTTGT TGAGAATCTTCATGAAGTGGTGATCGATTCTATTCTTTGTCCATCCAAGGGTTTGAAAATTTACATTGTGGACTTAAGAA TATTCCATTCGACCTGCAACCCAATTGCTCAAGAAATTCAAGCTAAATACTTAGGGGAAAGTATTATGAAAAGCCAGGAC ATTCTTGAAAATTGCAGTGGCCTTTTTGTAAGTTTTCTTTTATTTTAAATTATGTTTGTCATTGGATCAAGGTTTTAAAT TGCAATTTCCCTCATGTTGTGAAAGTGTATGCAAAAGCGGTGGATATGGCTACGATTGTTGTTACGACACACTTACAGGA TTCAAAATCCCTCTATCTTGCAGCCATAATTGCTATTGCAAACCCTAACTTAATACCCTGTTTGATATGATGTGATTGAT GAAAATAATAGTAGTCACAATTGGGGTAGTATCTAAGATTTTGATACTTTACATTCACAATTGTGACTACACACAAATAT TTAAATGACAATTTTTATAGTTAGATTTATATAGTTGAAAAAATAATGATTCATTTACTTTCGTGATGAAATTGTAATGT TTATTATGGCCTAGGTTTCCTCATATAGATAAAATATGTTGTGGTGCTGACAGTGATGATTTGTTCTATGTAGGAATCTC AACCAATCAACATTTTTCGTAATTTATTAACCATGTCAATTGATTTGGATTTGAACAACATAAGAGAAGCTCTAGCACTT TCATTCGTACTGAGATCATGCCACTGTCTGGAATCTCTTGATATTACTATACCGGTATGTCAGTCATAACCTTGTTGCAT TCATACTACTTCCATTGTGTTATTTACTTACTAAGCTAAACATTGAAGGATGGAATTCATTTAAGCCTAATATATCTATG GTTCTTCAAATATTGATTGTGTTTCATAGGTGAAGAAGGGTTCAGATACGAGTGATGATGGTGCTCTACCATTTCCCAAG TCAATGTTCTGGGAGAGACGAAATTGTGTTAATCACAAGTTAAAATTTGTTACTGTAAGGGGTTTTACAGGGAAAGAACT AGAAGGGAAGTTTGTTGAGCATTTGATTGCAAGAGCCGTCATGGTGAAAAAAATTACTATAATTTGCAATTTCTCAATAG TGGAGGAGGCAAGAAAGTTACTGTCACAGCGAAGACTATCAGTTTATCTCTCAATCATATTGAAGTCTAGAAGGCAGATT AAACTAACTGGGGTTGCTGACGCAGTAAAGGGCAGGTTAGCATATCTAAAGAATAATAGTGAGTTCTTCCAACGCTGAAA TGCTAATTTGTAATAATTTTTCAAAATTCCTATGTTTTGCAAGATTCTATGAATCTTTTTAATACATTATTTGATGGATT TCAATTGAATTTCATAATAGTACTATAAACTTGGTTGAAAATGGGTGCTAAAGAGTGTTTTTAGCCTTTCTAGCTGCAAG TAATGCGTCGTACATCATTGGTATATGGTTGGTA
CDS sequence (LotjaGi3g1v0243300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAAGGAAGAAAAGAAGCGATGAGGGTGACATGATCAGCCTTCTCCCGGATGAGATCTTGACCTATATCATCTC TTCTCTTTCTGTCGACGAGGCCGTGAGAACCAGCATCTTGTCAAAGACATGGAACCCCTTGTGGAGGAACTCTTCGTGCC TCGACTTTGATGGGACCCGCATGATCAAACGCCGCAATGTACACGCTGTTCGCAAATATGGTGAACTCGTGAGCACCGTG CTGAACCGTCACCTTTGTGACTTGACCATGTGTCGCTTCAGGTACCTCTCTCCGAGCCTAAATGCTGAGGAATTGGCAGC TTTAGTTAAGTTCCTCGTGGAGAGAAACAAAAATTTGATTTCTCTTACCCTAGAGTGCATTAAGACTAGACCATATTTTC CATCTGTTATGCTTAATTTCAAGTCTGGGATCTTTTCAAATCTGTGTTCACTCGAGCTTAACAACTACTTGATGAGGAGG GTTAATGCATCTGCGTTTGAGGGATGTAAGAAATTGAAGACCTTGAAAATGAAGAAAATGATCATGGAGGAGCAAGCTGT CAATGATGTTCTGGAAAACTGTTCCAGTTTGGAGAGGTTCATCCTGGTAGAGTCAACCGGGTTCAAGAAACTCAAGATTC GTAACCCGAGTCTCAACTTTTTGGAGCTCCGATGGTTGGTTGTGAATGAGATAGACGTTTTTGTTGAGAATCTTCATGAA GTGGTGATCGATTCTATTCTTTGTCCATCCAAGGGTTTGAAAATTTACATTGTGGACTTAAGAATATTCCATTCGACCTG CAACCCAATTGCTCAAGAAATTCAAGCTAAATACTTAGGGGAAAGTATTATGAAAAGCCAGGACATTCTTGAAAATTGCA GTGGCCTTTTTGAATCTCAACCAATCAACATTTTTCGTAATTTATTAACCATGTCAATTGATTTGGATTTGAACAACATA AGAGAAGCTCTAGCACTTTCATTCGTACTGAGATCATGCCACTGTCTGGAATCTCTTGATATTACTATACCGGTGAAGAA GGGTTCAGATACGAGTGATGATGGTGCTCTACCATTTCCCAAGTCAATGTTCTGGGAGAGACGAAATTGTGTTAATCACA AGTTAAAATTTGTTACTGTAAGGGGTTTTACAGGGAAAGAACTAGAAGGGAAGTTTGTTGAGCATTTGATTGCAAGAGCC GTCATGGTGAAAAAAATTACTATAATTTGCAATTTCTCAATAGTGGAGGAGGCAAGAAAGTTACTGTCACAGCGAAGACT ATCAGTTTATCTCTCAATCATATTGAAGTCTAGAAGGCAGATTAAACTAACTGGGGTTGCTGACGCAGTAAAGGGCAGGT TAGCATATCTAAAGAATAATAGTGAGTTCTTCCAACGCTGA
Protein sequence (LotjaGi3g1v0243300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTERKKRSDEGDMISLLPDEILTYIISSLSVDEAVRTSILSKTWNPLWRNSSCLDFDGTRMIKRRNVHAVRKYGELVSTV LNRHLCDLTMCRFRYLSPSLNAEELAALVKFLVERNKNLISLTLECIKTRPYFPSVMLNFKSGIFSNLCSLELNNYLMRR VNASAFEGCKKLKTLKMKKMIMEEQAVNDVLENCSSLERFILVESTGFKKLKIRNPSLNFLELRWLVVNEIDVFVENLHE VVIDSILCPSKGLKIYIVDLRIFHSTCNPIAQEIQAKYLGESIMKSQDILENCSGLFESQPINIFRNLLTMSIDLDLNNI REALALSFVLRSCHCLESLDITIPVKKGSDTSDDGALPFPKSMFWERRNCVNHKLKFVTVRGFTGKELEGKFVEHLIARA VMVKKITIICNFSIVEEARKLLSQRRLSVYLSIILKSRRQIKLTGVADAVKGRLAYLKNNSEFFQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 60 | 58 | 3.01E-10 | ||
| Gene3D | 11 | 251 | 241 | 2.1E-19 | ||
| Pfam | 14 | 50 | 37 | 2.0E-4 | ||
| PANTHER | 15 | 443 | 429 | 2.0E-44 | – | |
| PANTHER | 15 | 443 | 429 | 2.0E-44 | – | |
| SUPERFAMILY | 107 | 364 | 258 | 5.49E-7 | – | |
| Pfam | 370 | 408 | 39 | 2.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0243300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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