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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0247700 |
| Transcript ID | LotjaGi3g1v0247700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|I1LSB4|I1LSB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0247700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:40852834..40855610) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGGGAAATTTTGGAACCCTAATTTGATTGTTGGTGTCTCTATTTCTTTAGTTTGTTAGATAACATGTGATGGTTATT TCGTTTTGATTCATCCCTATTATTCTTTCACTCCTCCACATCAATCTTGATGAATTCAACAACTGTGTATTTTGCTGCAA AATCTTTACCAATTCAATAAATTGAGGGAATGGTTCTGGACCTGATTTGCTTACTGGAACGTTGTGGTGCTGTTTTAGAC AGTGAATTTGGGACTTCCTTGTTGCTCTTGAAGGATTTGGTTGAAGTAGCACCTTTATTCTCCTTGGCTTTTAGCTGGAC GTTGCTTGTAAACAAGGTGAAAGAAGGTGAAAAATTGTGAAACGGGATGAACATATCTGAAAGAAGGTGAAAAAATTAAT CTCATTCAACATTCAATTTTTTCACCTAACATAAGGATTGAATTCGAGAAATTGAAGGTACTGGGGTTAGTTTATAATTA CAATAAACTTACAAGGTTGATTTAGAGTTTCAAGAAGTCCACAATATTATTAATAAATAATCCAAGTGTAATATTCTTAT TGGTACATGTCACTCATGTATTTAACCCAATTTTTTTTTTTTTACCAGAGGAAATGCCCAAAAAGTCTAACTAGATTTTC AACATCCTATATCTTACTGGTACAAGAACTTCTCCTATATAAATAAAGGTGTGTATTTCCATAATCCCTGTATCCTCTAG ATCTTTCCCTTTGCTTTCTTAGCCATCATCATCTATTGTCATGTGACTGATGACTACATCTGATACATAAGATACTATAC AGAGATTTTCATCACCTTCAGGCTTCACTAATGTACACTCCAAAATCGCTTTGACAAAAAACAAAACATCTCCTATTCCA TCATTCTAAAGTTGTCTTCTGTTTCTGGCCCCCCACAACTCTTCTTACTCATACTCACTCACTGTGTGTGAAATTGCGTG AACTAGTGAACTTGCAAATTGCACACCCTCTTGAACCAGTGACTTTCTTATTTTCATTTGGTTATTATTTATTTGCCCTG GAAATGGAAGCTTTTGATTGGGACTGTGGCATCCTTGGAGATGCTCCTAAGAGAATCAGTGATGGTTTTGAAGTAAACAA TGGTGTAAATGGAAGTGGGTATGGTTCACCTCTCTCTCTGGTTTTGGATAGAGAGAGAGGGGAGCTTGTGGAGGCCCCTG CCAAATTGGAACGGAAGGGTGTGTCCAATGAGAGAAGCATTGATGCTTTGAAGAACCATAGCGAGGCAGAGAGAAGGAGG AGAGCGAGGATCAATGCACATCTTGATACTCTTCGCAATGTGATCCCAGGTGCTATGAAGGTTAGTTTGACCAAATGGTG TGCTTTCTAAATCACCAATTTTTTTAATGCTTAAGAAATATATTATTGGTTACCAACGTTTAAAGTGGTACATGTTCGAT TTCCCTTATGTAAGGTATCAGGTTCAAGTCTTGTGTATGGAAGAAAAAAAACTTGTTGGAAGAACTAGTCTCACCATAAT GTGATGTTACCGGCTCAAACATAATTGCTTCGCGTAAATAATGATACTTTCTTAGACCACCAAAAACAAGTCATTTGGTT AAATTGAGTAATAAAAATAATGGTGGAAATTAAAGGGTGTAGAAAGATCTATATGCTACTTAACTCCCCTTTGTAAGCTT AGCTTGACACCACAATTTGATGGATTTGGTACAAATCATCTATGCATCCATCTTCACTAGAGCTTATACTGGAAGAAATA TTACTTGAACAATTAAATTGATTAGCATTGTCTTTGCTTCCACTGATTAGCATTCCATTTCCTTCCACTGATTAACTTTG GATGGCAAACTATGCTACTTGGTAGTAAATGATCATACGTAAGGGGATCCATTAGTAGTCATTTAGTAAGATATTGAATT GTTGTTTTGATTGTCAAGGACAAATTTTGAGTGTTCTTTCCTTAAAAAATGATGAGAGGAATTCAATGTTAACTATCCAA CCCAGTCATGTTCATAGTTTGAATAATGAAGCTCATGTGTCAGTAGAAATAAACATTTTGAATCATTCATTCATCCAGTG TAAATCTGATTGTTGTTTAATGCTTTTGAACACATAGATGGACAAAGCATCATTACTTGGTGAGGTTCTTAGACATTTGA AAGATCTGAAAAGGAATGCAGCACAAGATTGTGAAGGTTTAATGATACCAAAGGACAATGATGAAATCAATGTTGAAGAA CAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCAGGGTTATTGTCTAA TATAAGACAAGAACTAGATTCTCTTCATCTTATGATAATCAAGGCAGATATTGCAACTCTGGGAAGCAGGATGAAGAATG TGCTTGTGATTATTAGCTGCGAAGAACGGAACTTTGAAGATGCTGAGTACCGTCAGTTTCTCGCGGGCTCTGTTCACCAA GCTCTGAGGTCTGTACTCAATAGATTTTGTGTTTCACAGGAGGTCTTAGGAACCAAAAAAAGAAGGAGAATTTCTATATT CAGTTCATCATCTTTAGAAGATTTCTTATAAGCACCCTTCTCAAGTAATTTGAATGTGGTGAGGAAGTGAGTGATAAATG TAATTTCTTGTACCATGTAAACTCATGTGTACACACTGAAGTGTTGTGCTTCTACTCTTTCCACTTTGGATATGTACTCT TCTGATAAATCACATGAAAAGAAAGCAGGCATCTTATTTTGGTTCTTTGAATATTTA
CDS sequence (LotjaGi3g1v0247700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTTTTGATTGGGACTGTGGCATCCTTGGAGATGCTCCTAAGAGAATCAGTGATGGTTTTGAAGTAAACAATGG TGTAAATGGAAGTGGGTATGGTTCACCTCTCTCTCTGGTTTTGGATAGAGAGAGAGGGGAGCTTGTGGAGGCCCCTGCCA AATTGGAACGGAAGGGTGTGTCCAATGAGAGAAGCATTGATGCTTTGAAGAACCATAGCGAGGCAGAGAGAAGGAGGAGA GCGAGGATCAATGCACATCTTGATACTCTTCGCAATGTGATCCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGG TGAGGTTCTTAGACATTTGAAAGATCTGAAAAGGAATGCAGCACAAGATTGTGAAGGTTTAATGATACCAAAGGACAATG ATGAAATCAATGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATAT AAACCAGGGTTATTGTCTAATATAAGACAAGAACTAGATTCTCTTCATCTTATGATAATCAAGGCAGATATTGCAACTCT GGGAAGCAGGATGAAGAATGTGCTTGTGATTATTAGCTGCGAAGAACGGAACTTTGAAGATGCTGAGTACCGTCAGTTTC TCGCGGGCTCTGTTCACCAAGCTCTGAGGTCTGTACTCAATAGATTTTGTGTTTCACAGGAGGTCTTAGGAACCAAAAAA AGAAGGAGAATTTCTATATTCAGTTCATCATCTTTAGAAGATTTCTTATAA
Protein sequence (LotjaGi3g1v0247700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAFDWDCGILGDAPKRISDGFEVNNGVNGSGYGSPLSLVLDRERGELVEAPAKLERKGVSNERSIDALKNHSEAERRRR ARINAHLDTLRNVIPGAMKMDKASLLGEVLRHLKDLKRNAAQDCEGLMIPKDNDEINVEEQEGGLNGFPYSIRASLCCEY KPGLLSNIRQELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNRFCVSQEVLGTKK RRRISIFSSSSLEDFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 2.0E-143 | – | |
| PANTHER | 1 | 253 | 253 | 2.0E-143 | – | |
| Gene3D | 62 | 125 | 64 | 8.1E-14 | ||
| ProSiteProfiles | 67 | 116 | 50 | 15.313 | ||
| SUPERFAMILY | 70 | 119 | 50 | 8.9E-13 | ||
| Pfam | 71 | 117 | 47 | 4.2E-10 | ||
| SMART | 73 | 122 | 50 | 1.4E-11 | ||
| CDD | 155 | 226 | 72 | 1.4689E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0247700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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