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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0247800 |
| Transcript ID | LotjaGi3g1v0247800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT5G27260.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880; TrEMBL-Plants: tr|I3SPT3|I3SPT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0247800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:40883706..40888373) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATCTCAAACACAGGATATGATAAGAGTCTATCCTGCTCTTATCATATCCTGTTCTTATCCTGTTCACATATCATAT CCTATCATATCCTATCCTGACCACCAAACGGGCCCTAAAATGATGTATAACTGAATCCACCATCAAAAGGTGGGATTAGA CCTGATAAACCATGATGTATTAGCCACTTAAAAATTATTCCAGCCCTAACCCCATTCATCAAGAACGCTTCACTCACGTA TTGTTTCATCTTCCTCTTCTTCCTCCCTTCACCTTCCTCTTCTTCCTCTGCCAGCTTTGTCCCCTTCATCTCTTCTTCTT TCACGTTCTTGTTCTTCCTCTTCTCTGCCAAGTAAGTTATTTTGCTCTACTGCTATTTTACAATTCTCGTCTTTTCATCT TTTTTTGTTTTTACTTTCAGTTTTTGCATCATCTTATCATATTGCAGTTTCCCTTGTATTGAAATTTTCTTGCTTGACTG AATATGTACATCGTTTTTTGTTTTCCCCAATTCTTTTTACTTTTAGGGTTTAGTTTTTTTTTAACATGCCAAAATTTGAA AGCTTCATGGATGAATGAAAAACAGAGTGAACAAAAACTTCTAATCCACTTCTTCATCATGATTAAATAATCTAGGAGAA ACCACAAACACTAGCATCATTAGAATTGGCTTTTACGGTTTGTTACTATCCTGGGGATATGTTGGTTTATGTTTGTTTTT TCCCTAGCTGGTATAATTTTCAGATCCTATTATATGCTACAAATTGGGGGTTTCACTAAAATTATAGTAGCTTGGTGCAG GCTCGTGATATTTAAAGCTTTGGATAGCTTTTGGGCTTTTAGCTACTGGTTTATTTGATTTTGGGGGTGTTATGTTATTT CACTTGGAGGCTTTGATAGAGTGATAGCCACTTATTGAATGTCTGGCATGTTGTATTAATGTGTTGTTTGTGTTTATCTT TTGAGGGATACTTGTTTACTTTGTTTAGCTTTTGAACCTCTTTTGAGAGAGTTTGTTCCCAACTCTTTCTCTTTAAAAAA AAAGCTTCTTGATAAGCTACTGTTAGTGTTAATGAGCATCTTTTAATGTATAATGGATTGAATTGGTAAATTTTGTTACA TGCTTGACCTTTGGATAAGCTACTGTTAGTGTTGTTGAGCATCATTTATGCAGCTTTTTTTCCCTATCTTTCTTTATAAC CTTGTTTTAAATTGGGTTGAAGTATCTCTTCTACTTCCATTCAATATATCTTTAGCTTATAAATATTAAATGTGTGCTTG TTTTAATGAGCTTTATTTGATCTAAACTGTTTCTATATAAATTGTTAAACTATTTCTATATTAAAGTATTTCTAATGAGT TGCTTATATATCATCAAAACTGTTTCTATATAATACAGCTCTTTAGTTAATTTTTTAATTTTTTAAATTTTAGGTGAAAT GGATCCAAATAAAGGTTCTGATCCAAATCAATGGTTAAATGACCCTAATGAGTGGCTTAATATTTTATCATACCTACAAT TGTGTCAAGTGGGTAAAAGGCAATATGAAAGGCTCCAAGAGAGACATGTAATACCAAGAGTAAGAGAAGAATCAAGGGTG TCATTCATGAGGAGGTTAATAAATGATGATGTTACATGTGTGGAACAGCTGCGGATGGATACTAATACGTTTCGCGTGTT GTGTTCTCTTCTACGTTTTGAGGGTGGGCTAAAGGAAGATGGGCTAGTGCCTATAGAAGAACAAGCTGCTATATTTTTAC ACATTTTGGCTCACCATGCTAAAAACCGTGTCATAAAATTTAAATTTCAAAGGTCTGGGGAAACTGTTAGTAGATACTTC AATTTAGTGTTAAATTCTGTTGTAAGGTTGCATAAGAACTTACTTAGAGCACCAGATCCAGTTCCTGAGGATTGCATTGA CAATAGGTGGAAATGGTTTAATGTATGAATAATAGTAGAGAATTTTTTTTCTTTTTAATTATGATATGGTTTCTATATAT CTAACAAGATTGAACGCTGTTAAAAGGACTTTGTTTATATATTTTAGGGCTGTCTTGGAGCACTAGATGGGACCTATATT CCTATTAATGTCCCGGAGATTGATAAACCAAGATATAGAAGTCGGAAAGGTGAAATTGCAACAAATGTCTTAGGAGTATG CTCTCGGGATATGCAATTTATATATGTGTTACCGGGTTGGGAGGGTTCAGCTTCAGATTCTAGGGTGTTGCGTGATGCAA TTAATAGGAGAAATGGTCTTAAGGTTCCCACAGGTAATAATTCTAAAATGACATCTGAATTCAAGATTTTATTAAACTAA AATTAGATATTTAATCTATTCTATTTGTTCTTGAAATAGGAAACTACTACTTGGTAGATGCTGGGTATACAAATGGAGAA GGGTTTCTTGCCCCTTATAGAGGAAGCCGATACCATCTTAGTGAGTGGAGACATAGACGTGCTCCAACGACTCCCAAAGA ACTATTCAACAAGCGACATGCTCAAGCTAGAAATGTGATAGAAAGAACATTTGGATTACTTAAGATGCGCTGGGCAATTT TAAGAAGTCCGAGTTATTATCCCGTTAAAACTCATAACCGAATAATTATAGCTTGCTGCTTATTGCACAATTTGATTAGA AGAGAAATGTCCATTGATCCATTAGAATCAGAGTTGGAAAACATGCCTATCAATGAAGAGGTAGATGAACAACCACATGA TAACATTGAAACTATTGAAGCAAGTGCAGCTTGGACTGCATGGAGAGACGCTTTGGCAAATGAAATGTATAATGATTGGA TTAGCCAATGAAGTTAACTGTAGAGATTTTGTGTCTATTGATTCTGTTTGTTAGACCTTCAAGTTATGAAAAATATTTGT GTTTTGATGGTTTCTTATTGTGAATTTGGAATGGATTATTCAAAAGATTTCCTACATTTTCATTGAAATGTATGTACCTT TTATATTAATTTAGTTATCCTTTTTTATTTCTTCTTTTTATAGTTGTATTTTCCATTTTATTATTTTTATAGGCATGGCA TCTGAAGCTACTCAACAAGCTGCAAAAGTTAAAGTAGAACGTAGGGCTTGGAGTGATGAAGAGTTTAATGCATTATTGGA TTACTTGGAAGAGGCGGTTGCTAATAACAAAAGGTGTGATGCTGGACAATTTAAAAATGGTACTTTTAAATGGTTGGAAC AAAAGTTAGAAGCCAAATTTCCTACAGCGGGAATAAAGGTGAAACCACACATTGAATCAATTATTAGGAGGCTTAAAAAC GAGTACAAAGAATTATATGACATGCTGAATACAAGTGGTTTTGGATGGGATGATGTGAACAAGAAAATACATGTTGATAG CGATGATGTTTGGAATGCCTACATTCAAGCTAACAAGGTAATCTATTTGTTTAAATTAGTTTTTTGAATGTCTTATTTAT TTTTTCTACATTAAACAGGTTATGTGACTCATGTTTATTAATTTTTTATGCATGCAGAAGGATAACGCTGTGAAGAATTA TAGGAACAAAGTGTTTCCTCACTTTAATCGGATGGTGGTTATTTTTGGGAAAGATCGTGCTAATGGAAAAAGTGCAGAAG ATCCTACTGATGTTGTTGAGGATTTGGATAAAGAAACAAACACTCATGGAAACAATACTACTGATGAACATATGGATGAA GTTATTGGATTAAGTGATGATGATATTCAAGATGTCACTCAAGCCATGTCCAATAATCAAAATAGAGGTAAGGAGAAAAT TACTCATTCTGAAAGTCGAAGAGTAAGAAAAAGGTTAAGAGGCGAAGATTTAATTGCTACTAGCATGGACAAGTTTGCAA ATCAACTAGTTGAAGTTGTTGGAAAGTCTGCTGATAGGATGGGAGATATGGCTGAAAGTGTCAAGTGCATGGCTGAAGGT GTGAAAGTTGTGAAAGACTTTTATAATGATTCAAGGGCAATTCCTAATGAGCTGATGAAAATGGAAGGTCTCACATCTAG AGAACGCAACAAGGCTGGTCGTCTACTTATGCAAAACCTCCCATTGGTACATTTATTTTGGGGTTTTCAAGGTGAACATA GAGTTCAATTTGTGAGAGATTTACTTGAAGATAACTAAGTTCATGTTGCGGGTTAGTTGTTGTCATTGTTGATGAACAGT GCAAGATGGTATGTGGATCTTTGCTGGTTTTTCTCTTGCTGGATTTGCTGGGGTGTAGTTTCTTTCTATTGGCCATGGTG CTGTACGAGTGCTAATGTCATTTAGTTTTTTATCTCCATGACTTTAGACTTTTGTTTCTTTCCCTACAATGTGTTGTTGA ACCTTTAGTTGGTTTTTGTCTGCATCTTACTTTATATACTTATTGGGGCTATTTTTTGAACAATTGGTAGCTCCTTGTTT GGTGTATGTTGCCATTAGAACTTACTACTTTATTATGGATTTATATACAATATTATTTGGCTATTTTGGATGTGCTGTAC TAAAAGATGTACAATTTTTGCTTTTTTATTATATAATTATCATTTTGATCGAAATTCCTACTGGAATATGTACGTCAATT GCATTTGCTTGGTTGAAAACAAATGTCAAATAAGATATTCTAACAACAGTGGAAATATATAAGCTACAATTTTTATGTCA ATTTCACTTGCTTGTGCTTGTTTGTTGC
CDS sequence (LotjaGi3g1v0247800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTGAAGCTACTCAACAAGCTGCAAAAGTTAAAGTAGAACGTAGGGCTTGGAGTGATGAAGAGTTTAATGCATT ATTGGATTACTTGGAAGAGGCGGTTGCTAATAACAAAAGGTGTGATGCTGGACAATTTAAAAATGGTACTTTTAAATGGT TGGAACAAAAGTTAGAAGCCAAATTTCCTACAGCGGGAATAAAGGTGAAACCACACATTGAATCAATTATTAGGAGGCTT AAAAACGAGTACAAAGAATTATATGACATGCTGAATACAAGTGGTTTTGGATGGGATGATGTGAACAAGAAAATACATGT TGATAGCGATGATGTTTGGAATGCCTACATTCAAGCTAACAAGAAGGATAACGCTGTGAAGAATTATAGGAACAAAGTGT TTCCTCACTTTAATCGGATGGTGGTTATTTTTGGGAAAGATCGTGCTAATGGAAAAAGTGCAGAAGATCCTACTGATGTT GTTGAGGATTTGGATAAAGAAACAAACACTCATGGAAACAATACTACTGATGAACATATGGATGAAGTTATTGGATTAAG TGATGATGATATTCAAGATGTCACTCAAGCCATGTCCAATAATCAAAATAGAGGTAAGGAGAAAATTACTCATTCTGAAA GTCGAAGAGTAAGAAAAAGGTTAAGAGGCGAAGATTTAATTGCTACTAGCATGGACAAGTTTGCAAATCAACTAGTTGAA GTTGTTGGAAAGTCTGCTGATAGGATGGGAGATATGGCTGAAAGTGTCAAGTGCATGGCTGAAGGTGTGAAAGTTGTGAA AGACTTTTATAATGATTCAAGGGCAATTCCTAATGAGCTGATGAAAATGGAAGGTCTCACATCTAGAGAACGCAACAAGG CTGGTCGTCTACTTATGCAAAACCTCCCATTGGTACATTTATTTTGGGGTTTTCAAGGTGAACATAGAGTTCAATTTGTG AGAGATTTACTTGAAGATAACTAA
Protein sequence (LotjaGi3g1v0247800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEATQQAAKVKVERRAWSDEEFNALLDYLEEAVANNKRCDAGQFKNGTFKWLEQKLEAKFPTAGIKVKPHIESIIRRL KNEYKELYDMLNTSGFGWDDVNKKIHVDSDDVWNAYIQANKKDNAVKNYRNKVFPHFNRMVVIFGKDRANGKSAEDPTDV VEDLDKETNTHGNNTTDEHMDEVIGLSDDDIQDVTQAMSNNQNRGKEKITHSESRRVRKRLRGEDLIATSMDKFANQLVE VVGKSADRMGDMAESVKCMAEGVKVVKDFYNDSRAIPNELMKMEGLTSRERNKAGRLLMQNLPLVHLFWGFQGEHRVQFV RDLLEDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 317 | 314 | 1.4E-57 | – | |
| PANTHER | 4 | 317 | 314 | 1.4E-57 | – | |
| Pfam | 19 | 116 | 98 | 3.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0247800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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