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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0252500 |
| Transcript ID | LotjaGi3g1v0252500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L1; TAIR: AT2G42710.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B3PW56|RL1_RHIE6 50S ribosomal protein L1; TrEMBL-Plants: tr|A0A1J7H5Z5|A0A1J7H5Z5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0252500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42447511..42455291) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGACCGGTTAACCCGGTCACCAAACCCCCAAATTCTAAACCCCCTCTTCTCCCCTCTCCTTCTCACACACACAGTAC ACCACTCAACCATGGCGGCACTGAAGCTTCTCCTCTCTCCAGCTCGCCGCCACTACCTCACCAAACACACTACTTCACAT TTCCACTCTCCCATTTCCCTCACCTCTCACAGATCCCTTTCTTCCTCCTCCGAATCTGACCCTCCTCCACCCCGACCCTT CGAACCCATCCCAATCCAACCCGTTTCATACCCCGTCAAACCCAAAGACACCCCCTCTCCTCCCCCTCCCGACTCCCTCC GCCAGCCTCCGCCGCCGACACAGCTTTCCGGGGAGGCCCCGGAGCCGCAGCAGCGGGCATTGACGCGCGAGGATATTCGC TACGTGAAGGATGGGCCGTCGATAACGCCGGTGTCGTACCCAATGCGGGTGGCGCCGCTCCCCGAGGATATGGTCCCGGG GCAGAAGAATGATGAGATGGAGATGGAGAGGAGGAGGATTGAGGCGGAGGATCAGTTGAGGGCGAGAATGGTCAGAGCTG TGGAAGATGAAAAGATGAAGGTTCCTTTTCCGTTATTGATTAGGCCTAAGCAGAAGGAGAAGCCCCCTGTTCTTGATTTG ATGGAGGCCATTCGCCAAGTTAAGGTTAGAGGTTATTAGACTGAATAAACCATCCTTTCAATCATTTTAGAAGTTATGGA CTTAGTAATTTATAACATTAATTTAGGATGAAAATGTGATTTCTATCTTTCAGGACTAAAATGACTGACCTTATATATAA TGGATTACTCTTATTGGACTTGTAATTTTGAACTTTATCTTCATTTTTCTTTCCATAAAAGTTAGTGGTGGTGATTAGCT TGTGTTACTCATGTTTGCCCCCCAGTAGAATCAAGTTGTTAGTTGAGGGCACAAACTTAGCATTAGGTATTTGGTGCCGA AGGAAACGAGAGTAATGGGTTTCAACGGTGGTTTTTTTCCTTGTAATTGTGACCATAAAGCAAGAACCATTAGTTGGTGT ATTTTTTGTTGAATGTGTTTTTCTAGCATGATTTGCAGACCAAATACATCTCTATCTTACTTGGATTTTTTCTTATGGGA AATAAAAGAAAGAGATTTGACTCTCCTAAAATGAGTGCACCTTAGAGGAAAGAAGTGCAGAAATATACAGTTGATCAGCA ACAGATTTTAAAAATTGCATAGTTTATTGTGCGTGCGCATATATTTCATTGCAATTTTGATTATTTGTAATTATGAATTA TGAATATGATTATAATACATACGCATGTCTCTCTGGCTTGAAAAACAATTTGAGTACTATTGCAATGACGTTCTAAAAAC TGCAGCCACAAGTCATAGTCATGTCTCTCTTAGCCTGTTTTTTGTCCTCTGATGTATATGTGTACTCGTGCATGTAAATG TGTTTGCAAGTAGTATGCAGTTATTTGTGTTATAAAAGTAATCCAAAGCACTTTCCTTCTGTTGCATTTTGAATATTCTT TGTGTAACAACTAACAACTCTTTTGGCATGTCCCATTCTCTCTCACTAACCTTTAGCATTTCTTCTATAACAAATAGTGC TAAATTAATGCATTCTTATTCTTAGTAGAGCTAGAAGTTAGACAAAACGATACAATCTCAAATGTTTGTGATACATTCTT GATTGGTTAAAATATTGACTTTTAGATTTCGCAATGTTTTAGTGATTTTCAAAATTTTAATGTGTTCACTTTTATCTTAG TTCTGATGCCATTGATTGAATTTGGGTTGGTACAAATCCTTAGCTGTAATCTTCGTCATGATTTACCTTAAATGTCCCAT AACCCATTGGCTACTGTCATTTAATATAGTTACATATTGTTCAGGCCAATGCCAAGGCGAAGTTTGATGAAACTATTGAA GCACATATAAGATTGGGTATTGAGTCAAAGCGAACCGAACTGGTATATTTATTTATTTTTCTGTTATTTCCTTTTCCGTG TTTTGCATTTGTAGACAAGGTCAATGACATAGTATTATGGCATTGGTCCATGTAGCCAAGCCCACCTAATGGGGAAAGAC TTTTGTTGTTTATGTTCTCGAGTGATTTTTTGAATGCCATGTTAAATTTTAATTTTGGCATGGTGGCTTAAGCTTTGTGT GTTTAGCATGTTCAATTTGTTGCATACTACTAGTGATGCTCTCAAAACTTGAGCATCATATACTCTTTGAAGATTAATAT CAAGTAGTTCTTTCTAATTACTAAACAAACAAATTCACATCTCTACAACTGCCCTGTGCTGGAAGACTTTGCCTGAAAGG ACTTCAAATTTCCCACCTCAAACCATATTTATGCTTTGTTTTGATAATTAGAGAAAGGAGCCTTTGATAGAGACTCGGAT ACTAAATGGGGAATGGGCCTAGGCAAGCTCTTGCAGCGTCGCAGTCACCGTACCCATCTGAGTCTCCAGCGCTTCCATGC GATCAGTCATCTTGGGTGGCATCTACTAACACTGGTTCCTGAGGAGCGTATTGATCCGGTAGGTCGGACCAATTGATAGG TTCTGATGAAGCTAACAGGTAATTTAGAGATGATAAAGACTGAAATACACTTGTATTGATTGATAAGCAGCAATTACAGT AAGGAAAAAATAGGATGTGCTGTTAGAATACTCTAACAACCCAGAGCAGCTCAAATGGCTATCTCCCTCAGAAAGATTCC TATCTCTCTCTCTATAACAGAATTGTAATCCTCTCCCCCCTCTCACCCCACACCTCATTATTCTATATACTAACTAACTA ACTCGCTCCTTTCTTCTGGAACTTGGACACCTCAGCACCTTTCCCTTTCTTTCTCACATAAACCTTCCATATCTTGGGCT TGCCTAGGCCCATTCCCCATTTAGTATCCGAGTCTCTATCAGCCTTCTTGATATATTCAGCACACACTGGACCTCCTATG TTCTTTTTAGGTATTAGCTTGGCTCAGGACATGTTTTTGATAGATAACTTATGTTGTCTTTGAGTGACATAGACCTCCTT TGGATGCCAACAAAAAATCACTTATTGGAGCTTATTTAGTGCTTTTTTTAGTAGATAAGCTCCAATAAGCTCTAATAAGC TCCAATAAGCCTTTTTAAATTGCATGTGTGAATTGTTTTTGGGAAATCTCTTCAAAGATTGATCGAACTGGATCTACCAG ATTATTTTTTGTCTTCTGTTAACTTTTGTTCTTACACATCCCTTATTACTCTTATACGTTTTGTTTTCTTTATATTTGGT TGAAAAAATGTTATGTACAATTTTCGTAATCCTTTACTTCAGAAGATAATGGTTTCAACTCTGGCAGGCAGTTCGTGGTA CTGTGATTCTGCCTCATGGTGCTCCTAAGGTAATTTGTTAATGTTAAGCAATCAATAGAATGGTTGGTTTGTCATCTAAT TATTCACATCTTCCAGGCCGTCAGTGTGGCTGTTTTTGCAGAAGGGGCAGAAGCAGAAGAAGCTAGAGCTGCAGGAGCTG ATATAGTTGGTGGCAAAGAGCTTATTGAGGAGATTGCCAGTAATGAACTACACTTTTTTCTCCAAGTATTGTTCATTTTC GTCATTTACCAATTGTCTTAAAAGATTAAGCTGTTGGGTGAAGACACATGAATATTTTATACTTATGTTTCTAACTCGTC CCCTTGCAAGAGCCCATTAGGCTTTAAGCATGAACAATACGCATGCCCACCTACCTTGCGCTGAAATTCAACTTTTTATT AGAATTTTGGGGGAAACAAGGATTAAACTCTAGAGTCTAGACCACTTGGTTATAGAGGTTCTGGTACCATCTCTTCAACA TGTTATCCCAAAAGTTAAGACATGTAGCTTTTTCTCATACTAAATTTGTGAAGATAGAATGTTCAGATGCATATTGTCTA TTGTTGGTTCTATACTTACTTTTCATACAATGTTAGATACATACTCATCTCCTATAAAATTATTAAACTGTGCTATTCAT ATCCGACTGATAAGCTTATACTCTAATAGGTGGTAATAATAAGCTCAAAGTTGACAAGTGTTTTTCAACTCCTGGAATGG CACCTCATCTTGGAAAGGTATTTCAAATTTGAATGCTCTATTCTAGTAAAATCATCTAACTTAATGGGTTCTTCTTCTAA AGCTTATATGAACTGTTATGCAGATAGCACAGTATCTAAGAAAGCGCAGATTGATGCCAGACAAGAAAGTTAGTTGCTCA ATATTTGTTGGCATATTATATACATTTTGAAGTGTAAAGCGTTTTTGGATTGTATTTAATTTCTGTTTGGTTGCATTGAT ATGTTGTTTTACAGCTAGGTACTCTGACCAATGATATTTCTGGGCAGTTGAAAGAGCTAAGACAGGGTCGTCTTGAGTTT AAAATGGAAAGTAAATCAATTTTGCATGCCGGAGTTGGAAAGGTGCTATCCTGTTCTCTTCCAATTGTTATAGACTTTTT AACAAGAGGCAACAGGTGTGTTACATGAGTTGTCCTTATATGCTTATAATAATATTCACAGGTAAGCTACAAAGATGAGT CTTTACGAGAGAATATTGGTGCATTTATGAATGCTGTGCTCCTTGCAAAGCCTGCTGGCTTAAAGAAGAGTAAGTGGCAC ACATTTTTATGCTTTCCTCTCTTTACCATCTGGTATTTTTCAAGTGCCTAAAATTGATTCTATCATAAGAAGGCCTGCAA AAGGTTTAGAATTTTATATATCAGATTAGGGTTTTCTTGTCGTCACTTTAGAAAATACAATGACTGGTGGTTAATTGGGT GCCTGCAATAAGAAGGCAGATTTGTGGACTATAGGAGAGCTCAGATTTGTGACTGTTCGGTACTTTGAGCTGTAGCTGCC AAATTTGAGTTTGGGGTTTAACTAAGGCTGTGGTAGGGTGAATTTCCGTGACCAAAAGAATCTGACAAGGGCTGATAAAT TAAAAAAGGGTAGAGATTGAGAAAAAGAAAGGAGCCTACTGAGAATTGATGACATCTTATAATTGAGAGAACAGAATATA CTGTTAATGTCTGGGAACAGAATATACTGCATTTTAATTTCCACTGTTTAAATATACATCCTGTAACTTATCGGACAATA ATTCGGTATAAGAGTCTAATTCTAAAAGCAGTAAAACTACAGTATACTGATACTATTACTATACCTTAGTGGAAGCACAG ACACAGAAAAATTAAATAATATCATAAGCCTAGGCCCATATGTAATCCTATATAAGGATATATAAAAATCATTTAAATTT CAGCAACGCCGAAAACTAAAATTTAAATGCAGTTACAACTTAACAAGGCAAGTAAGGATTTATTTTATTTAAGGTTATGC AATAATGAAACTTTGGACACAGTCATAATTTATAATTAAACCTATATAGTGAGATGATTTGATCAATAAGCTGATGTTTA TTTGATGCTAGTCTGTTGTGTTGTGTCAAACTGATGAATATCGACCTCCAATTAGGAAGGTTTATGAGAGGAGTGTTAGA AGTCCCACATTTCTAATAAGGAGAAATAAGAGGAAGAGGTAATAGCCTAGCTTAATAGGGATAACTGATTTCAGAGGCAG TTACTGTTAGCTGGATCAGTTAGTTGTTAGCTGGATCAGTTAGTTAGTTCAGTTACTGTTCTGTCAGTTAGGGAAGGGTA TAAATAAAGGGAAAGGGGAAGTTAGAGGTAGTTAGGTATTCAGTTGGAAATAGGAGAGACTGGACTCTCGAATATTCCAG AGGGGAACTAGGGTTCATCATTCACCATTGTTGTACTCAGAGCTTTGATTCTCAGTTTCTTTGAATCTCAGTTCCATTTT CATCAATAAAATCTCAGTTCTTGTTCTAGAGTTCATCACAAACTTGTATTTTTCATGATGTTGTATCTTATTTGTAATGA ATGCTTTAGAGGTGCAATTTTGGGGCTCAATTTCTGCTTTAACATGGTGTCATATTATCACCACTTTTATATGCTAAGAT TATTTCTATGATCTTATATTTGTCGTCTTTGCTGTTCAGCTTCCAAATATGCTGGGTATGTGCTGTCTGTCCATATATGC AGCACGGTAAGCTCTTACGTCTCGCTCTTTCTTTTATGAATTCTAAATTGTAATGTTACATGCTTGTATTTGATATGAAT GCTCATGAGGTAAAACATGGAATGTATGTAAAATGCCCCCTCCCACCTCACTATTCCTTTCTGAAAACTGGAAGACAGTA TTGGACTTTGAATTTTGAAATGATAGGACATCTATAAACAATATGCTAGTAATAATTATTGCGAAACATGGATTTTGTTT ATGGAGAAGGCTTAACCATCTATATTCTCCATCAAAATGACCTTTTTGATTGTTTATTTGTTAAAGGACACATATTCCAG CATTTTTTACTTTTGTCTATCTTTAGTTAAAAATAAATGATGCTTCTTTTTTGGTGTTATCTCTCTGCAACCCAACCCCC TCAAAAGATTAAAGGTATGACCTTGAAATTTGAGGAGTGATTGTTTGGGTTCTTCTTGCACCTACCTGGTGCATTAAGTA TCTCGACATTTAAGCAAAAAAGAATGAGCTCTCCTCACTACAGTCCTTTTTGGCCAGTTCCTTTCTATTCCGTATTAATA GTATTATTTCCTTATTAATATTAAATAACTTCAGTTTGATTAGCTTTGAGCCTCATCACTTCAGCATAAAATTCATTCAA TCTTTAAAGACGAATCATGTTAGTGTTTTACAATTCATGTAAGTCTATCAATATAATATAATCAACTTGCAATATTGTTA GTGTTTTATAGAATGCAAGTATCTGTTTAGTGTGCAAACCATGTCAAAAATTTTGGTTTGTACACTTCAGTTCTCCCAAG TTATTTTACAAGTTTCATTAATCACTCTCAGACCTATCAAGGCACATGTATTTACTCTGATTTAGCTTCTGCTAGACTTA TCAGTAATGCTTGGAATTGAATGAAATAATAAATAATGTAGTGTACATTTTCACGTTTCCATTTGTGTCCGATATCATCC TTATGTGCCAAACTCATAGCATTCTAGTGAAGCTTATAACTTTTTGATGCAAAAATGTTGTTTCTCTATTATAGAGGTTC ATAAAATTTCACGATGTACTTGTGAATTACTATGGGGAGGTAGAAGTGAGGGTGACAAGACCCTTGGTGATTACAGTTGG AGAGTCTGGAGAGTCGTATTTACCAGTATCATTGACTGTGGTGATGATAAACATCATTACAATCTTGTATACATGTTTTT TTCCTTGTTAGTTTTACATGCAATCTTTTTTATGCAGATGGGCCCAGGATTTCCTGTATCAATACAGTCGTTATCGAAAG CAGCAGATAACTACAAGAAAATGCATGTGGTATGAATCGTGGATAGGGGGAGGCTATGGTCTTTCAACATGAATCGAAGT TTGATAAACATGTGTTGTAGTTTTTTGTTCATTACCATTGATTTTCTTTGTCCTGTGATATATGTGGCAATAAGAAAGTG AAAAATTTAACATATTTGTGCGAGCTTGATTTGTTTCTGATCGTCTTCTGGTGTATATCACTTTCCTCATTGCAAAACTG AACTTACAAAACTTAGTAATACTGAGCTAACCTGATATTACTTTCTGAGTTATCACTGGATAACTTATATTTCTTTCACA TTTCCTACTACAAAACGTTTTCCAAATCACCCTCTCTACACATTTTTCATTACTTGTAAACCACCAACTTAAGCAAGGAT CTTATCCAAGTTTGAAAATGC
CDS sequence (LotjaGi3g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCACTGAAGCTTCTCCTCTCTCCAGCTCGCCGCCACTACCTCACCAAACACACTACTTCACATTTCCACTCTCC CATTTCCCTCACCTCTCACAGATCCCTTTCTTCCTCCTCCGAATCTGACCCTCCTCCACCCCGACCCTTCGAACCCATCC CAATCCAACCCGTTTCATACCCCGTCAAACCCAAAGACACCCCCTCTCCTCCCCCTCCCGACTCCCTCCGCCAGCCTCCG CCGCCGACACAGCTTTCCGGGGAGGCCCCGGAGCCGCAGCAGCGGGCATTGACGCGCGAGGATATTCGCTACGTGAAGGA TGGGCCGTCGATAACGCCGGTGTCGTACCCAATGCGGGTGGCGCCGCTCCCCGAGGATATGGTCCCGGGGCAGAAGAATG ATGAGATGGAGATGGAGAGGAGGAGGATTGAGGCGGAGGATCAGTTGAGGGCGAGAATGGTCAGAGCTGTGGAAGATGAA AAGATGAAGGTTCCTTTTCCGTTATTGATTAGGCCTAAGCAGAAGGAGAAGCCCCCTGTTCTTGATTTGATGGAGGCCAT TCGCCAAGTTAAGGCCAATGCCAAGGCGAAGTTTGATGAAACTATTGAAGCACATATAAGATTGGGTATTGAGTCAAAGC GAACCGAACTGGCAGTTCGTGGTACTGTGATTCTGCCTCATGGTGCTCCTAAGGCCGTCAGTGTGGCTGTTTTTGCAGAA GGGGCAGAAGCAGAAGAAGCTAGAGCTGCAGGAGCTGATATAGTTGGTGGCAAAGAGCTTATTGAGGAGATTGCCAGTGG TAATAATAAGCTCAAAGTTGACAAGTGTTTTTCAACTCCTGGAATGGCACCTCATCTTGGAAAGATAGCACAGTATCTAA GAAAGCGCAGATTGATGCCAGACAAGAAACTAGGTACTCTGACCAATGATATTTCTGGGCAGTTGAAAGAGCTAAGACAG GGTCGTCTTGAGTTTAAAATGGAAAGTAAATCAATTTTGCATGCCGGAGTTGGAAAGGTAAGCTACAAAGATGAGTCTTT ACGAGAGAATATTGGTGCATTTATGAATGCTGTGCTCCTTGCAAAGCCTGCTGGCTTAAAGAAGACTTCCAAATATGCTG GGTATGTGCTGTCTGTCCATATATGCAGCACGATGGGCCCAGGATTTCCTGTATCAATACAGTCGTTATCGAAAGCAGCA GATAACTACAAGAAAATGCATGTGGTATGA
Protein sequence (LotjaGi3g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALKLLLSPARRHYLTKHTTSHFHSPISLTSHRSLSSSSESDPPPPRPFEPIPIQPVSYPVKPKDTPSPPPPDSLRQPP PPTQLSGEAPEPQQRALTREDIRYVKDGPSITPVSYPMRVAPLPEDMVPGQKNDEMEMERRRIEAEDQLRARMVRAVEDE KMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKAVSVAVFAE GAEAEEARAAGADIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTNDISGQLKELRQ GRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLAKPAGLKKTSKYAGYVLSVHICSTMGPGFPVSIQSLSKAA DNYKKMHVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 19 | 100 | 82 | - | – | |
| MobiDBLite | 21 | 41 | 21 | - | – | |
| PANTHER | 36 | 403 | 368 | 4.8E-95 | – | |
| MobiDBLite | 42 | 87 | 46 | - | – | |
| MobiDBLite | 115 | 135 | 21 | - | – | |
| SUPERFAMILY | 176 | 392 | 217 | 2.49E-55 | ||
| Gene3D | 183 | 391 | 209 | 1.6E-67 | – | |
| CDD | 183 | 391 | 209 | 1.84776E-47 | ||
| Pfam | 191 | 387 | 197 | 3.6E-37 | ||
| Gene3D | 228 | 321 | 94 | 1.6E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0252500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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