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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0255800 |
| Transcript ID | LotjaGi3g1v0255800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase; TAIR: AT1G78520.1 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase; TrEMBL-Plants: tr|I3S7H3|I3S7H3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0255800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43897547..43901796) extracted from Lotus japonicus Gifu genome v1.2.
CTCACATCACGTGCATCTACCTTTAGAACTGTAACCTTTTCCCATGAAAGTCCACACCTCTCAATTCCCAACGTCTCTGT AATTTCTATAATTTGCTGTTAATGTAGCCGTTAGTAGTGTAACTTTGGCTGCTTTCTTTCACATTCCATGTATGTTTTCC TTTAAAAAAGGTCCTATCTTTCCACTCCACACACACCCATCCAAATTCTCAAACCCTCTCTCTCTCTCTCTTCATTATTC ATTACAGTCAGTAGCAGTAGTTCTGAGTTCTGACAGTACTGCTAGTATCAGCATAACAACAATGGCTAAATTGGGTGCTC TTCTTTTCCTTGTGTTCTTGTCTCTCACTGCAGGTATGTGTCAGTTTATTTAGTTTTGGCTCCAGCATGGATTTTCTATT CCAAAATTTCATCTCTTGTTCAGTGTGTCATCAACATTGGTCCCCAGAAGCCAGAATCTGCTTTTGTTTAGTCAATGGGA GCTTCAAATGATGAAAATCTTTCACTTTGAAGGGTTCCACAATGTAGCTTTTGAAATTGAGATCTGTCCTGGGTTTTACT AATTTTAACATTTTCAGTGGCCAAATTTATGAAAAGTATTAGTAAACCCGGCATTGGATTTGCTAGTGTAAAAAATCTCT AAAGTAACTGCACTTATGGCTTTGATCTTGATCAGACAATTCAAATCTATAGAAATTAATTTCATGTTTATAATTGTCAT TTTAAATCACATAAATTAATTTTATGTTTATAATTGTCATTTTAAATCACCGTCATCCGTGAGTAGCACTAGTTAGTCGG ATGAGAAAGCAAAGCAAGCTACCCTTCATTCAATTAAGTGTACAAATTACATACTAACATCACTTTGTTTTTCTTTTCCT CCTTTGACATGTGCAGCAGGGAATCTGATGATGGTGAATGGGCAGGTAAATTAAACCAAAATTCTAAAAATTCCTTTAAA AAAGTTATGTAAACTTCCTTATTATGAAATTGGGATGTTTAATTTTGTGTTTTGGAATCACAGAAAACATGGTGTGTTGC AAAACCTTCATCAGACCAAGCTACCCTTTTGTCCAACATCAACTATGCTTGCGCTCACGTGGATTGCCAGATTATGCAGA GAGGATGCCCCTGTTCTAGCCCTGACAGTCTCATCAACCGTGCCTCCATAGCCATGAATATCTATTATCAGTCCAAGGGA AGAAACCACTGGAACTGTGATTTCAGAGCCTCTGGCCTTGTTGTTGTCACCGATCCCAGTAAGTAGTTATATTAATTAAT TACTCATTGTGTTGTTTAAAGATTTAATCTGCTTGTATTCCTGTTATCTGAATGAAGTGCTAAATTTGCCTTTTTCTCAT CCTGAATTGCAATTTGCAGGTTATGGTAACTGCATTTATGCTTAGAAGTGGAAAAGTGGAGAGCATAAATACACTAAATA GTATATCTGCTTCTATGTAAGGCAAAATGTGGCGTTGCATTTGTGTTACTGTAATCTTTTGATGTGTGTAATGTATCTGA TCAGGTTGCAAATTTCAACCTGTGAATAAAGGCATAAAAAAGAAAAGGAAAAATTTCTTTAAATTAAATTTAGCTATATT TCAACCCATTTTTATTTATGAATCACTGGGCCAAAGACCCTGCAGTTACGAAAGATCATTTCAATTTGAACTTGCTTCTT CAAAGACCCAAAGTTGAACTTGCTTCTTCATATATGTACCTATTGAACATGTTTATTAAAGACACCTTAGTATGCTCCAA TCGTTTTACCTCTGAATTCCTCTTCTCCCTTTTAGACTTCTTCCTTGATTCCTTCATCTCATTCTTCTCTTCTTCTGGCA TTCACTATGGCTGCTTGATATTTAATTTATACCTGTTTCTTAAAATGCTGGTAGCCTGAATTAATTAACGACCCTTGTGA AGCAATATCTTAAGTTTTGGAGACATTAAAATCAAAAGGAATTTTCCAATTACTTTAACATTAAAATTATACCCTTTTTT TATGACGACAAAACTTAAATCATTAAAAAAGAACAAGGTTTATTATCCTGCTTCTAGTGTTTCAATTTGTACTTCGCTAT GCAAAAAATTATTGGCTCCACTGTTCTGCTCTCCTCTTTATATCTCATGCTCCACTCAATATGATATTTCTATCTAGTCT TGATTTCTGCCGTTGGATTAATAACTCCCCTAGATTTGATACTTATCTTTTATTGGAGATGAAACCAAGTAAATGGAAGA GAAAAATGATCTCTCATTTAGTGTTTTCAGGAGTACATGTATACATTGAGTCAGAGAAGGTAATGTAACTTAGCTATCTT CTATGCAGTTATAACAGAATCCTAACCCTAACTACCCTGAGCTAGTGTGCAGTTTATAATTACAATCTGTACATTTAATC TTGGAGCAAAGATGTTGATCAAGCCAATCTTGGAGATAAGTTCTGGCAAAGCTAAAGTAGAAATTGACTTTATCAAAATG TAAGCAATTTGCTGTTTTGAGCGCACATGAATTAACTTTTTAAGCCTTGATGGACCTGTTCACCGACAAAATGACAATCA ATGTCAATATGTTTTGTGCGTTCATGGTAGATAGGGTAGGTACCAATGTAAATTGCAGATTGACTGTCACACAAAACCAT TGCCGAGTGACAGTCAACATATAGATCTTGTAACAGACCAGTAAGCCATTTTATCTCACTAGTTACAGCCGAAATTCCGC TTCTGCAGAAGAACGTTCTCCATAGCCTGCTTCTTGGACTTCCGTGAGACCAATGAGTCTCCAAAGAAGATGCAGAACCC CGTTATTGGTCTTCTAGTATCAACACAATTTCCCCATTATTGGTCTTCTTCTGAAGATTTTTTTTTAAAAGCCAAAAGAA CTGATAAATTAAAAGAAAGCACAAGGGATGCTTCAACCCTTATACAAAGAGATATTAAAGGTGTAGATTTAGATACATGA AAGGATTCAACCTAACACCCCCAACCCCAACAAAAATCAGCAAAACAAAATTACCAACCCACAACACTGATCATGATAGC ACAAAATATAACAATTTTACATGACCAGCACCTAACAAATAGGACCCCACCCATACCAGCAACTATGTATTCCGCTGCAT AGCACCCAGTTGAGACAATAACATGGGTCCCCATCTCATTTTAATCAAGTCTCCTGTAGAATCAACACAAGGGACAGCTC CATTAAAAATGACAGAATTCCTCAGCAATCAAATACTCCAAACCGCAGCAAACCACACAGCTTTCCACCAATAATTCACT TTCATATTTCTGCCCAATAACCCATGCTGTAGGAAATGACACCTGCCATCTTGAGGCAATACAGTAGATAACCCCACCCA ATTATTGCAAGCATTCCAAATCATAGAATCTGAAGAAGATGATGTAAGGCATCAAGGTGTGCCATAAACTGACTCATCAG CTTATTTACTGTAAAGTGTAAATACAATGTCATGAGGTCTTGAAATTATAAGATACAAGAGGCAACCAATCAATCACTGG TATTGTGCATTATCAGCCAAGGGATCTCCAATACACAGGACAACTTGAGGTTTTGATCCATAGGAAGAGTGGCAGGAATG CAACTGTAAATCCTGTGTCTTGCAAAAAAAAGAGTGCATAAGCCGCTGTGACAATGAGATTCCTTGAGCTGAACGAGCTA TTTCAAGCCTGAGAAAGTACTTTAACTTGCCTAACTCCTTCGATTTAAAGGCTTGCTGCAGAATTTGTTTGACATGAGCC ACATATCTGCATTTTCTCCAACTATTATAATATCGTCTACATATACCAACAAGGCAATAAAAGATGATAATGTGCCTTTC ATGAACAAGGAGTAATCACGAGGAGATTGGACAAAACCATGGCTAACCAATGTTGTTGAGCATTTATGGAACCGCTACCG AATGCTTGCAGCTTGCTTGAGAGTATAAATTGATCTGTTCAATTTGCAAGCTGAATTCTCCCCCTTCACCAAATAACCTT GAGATACCTCCATATAGACTTCCTCAAAAAGCTCCCCATTGAAAAAGGCATTATTAATGTCCAACTGATTAAGATGTCAA TGATTCTGTGCTAACAAAGATTACAATGACCTCATTGTGGTTATTTTAGCCATAGGAGAAAAAGTATCTACGTAATTGAT ATCATTCTGTTGAGCTTAGTCTTTGGTTACCAGTAGTGGCGGAGCCAGGATTTTCATGGAGCATGGACAAGGTTAATACT AAGCTTAACT
CDS sequence (LotjaGi3g1v0255800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCCTTTAAAAAAGGTCCTATCTTTCCACTCCACACACACCCATCCAAATTCTCAAACCCTCTCTCTCTCTCTCT TCATTATTCATTACAGTCAGTAGCAGTAGTTCTGAGTTCTGACAGTACTGCTAGTATCAGCATAACAACAATGGCTAAAT TGGGTGCTCTTCTTTTCCTTGTGTTCTTGTCTCTCACTGCAGCAGGGAATCTGATGATGGTGAATGGGCAGAAAACATGG TGTGTTGCAAAACCTTCATCAGACCAAGCTACCCTTTTGTCCAACATCAACTATGCTTGCGCTCACGTGGATTGCCAGAT TATGCAGAGAGGATGCCCCTGTTCTAGCCCTGACAGTCTCATCAACCGTGCCTCCATAGCCATGAATATCTATTATCAGT CCAAGGGAAGAAACCACTGGAACTGTGATTTCAGAGCCTCTGGCCTTGTTGTTGTCACCGATCCCAGTTATGGTAACTGC ATTTATGCTTAG
Protein sequence (LotjaGi3g1v0255800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSFKKGPIFPLHTHPSKFSNPLSLSLHYSLQSVAVVLSSDSTASISITTMAKLGALLFLVFLSLTAAGNLMMVNGQKTW CVAKPSSDQATLLSNINYACAHVDCQIMQRGCPCSSPDSLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPSYGNC IYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 54 | 74 | 21 | - | – | |
| PANTHER | 59 | 163 | 105 | 6.4E-53 | – | |
| PANTHER | 59 | 163 | 105 | 6.4E-53 | – | |
| Phobius | 75 | 163 | 89 | - | – | |
| Pfam | 79 | 147 | 69 | 1.5E-17 | ||
| SMART | 79 | 162 | 84 | 7.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0255800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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