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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256900 |
| Transcript ID | LotjaGi3g1v0256900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0R0H309|A0A0R0H309_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0256900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44302183..44305397) extracted from Lotus japonicus Gifu genome v1.2.
CAGAACTCCAAATTGAAACTTCAAAATCCCTTCTTTTCATTTCAGCTCTGCTCTGCCTCCTGCCCTACCACCACCTCACT GTCGATGCCCCGTCAGTTGGCGGCTCCGCCGTCGACCGTCGCTCAATCCACCGTCATGAGTCTGTCCCGGCCCTCTTCTA CGGCACTCTCCCCCATGGGGCACCTTGCACATTTTCAACACAAGGTACTAGTTTTTCTTTCAGCTACATTGGGTTGCTTT GTTCCTTTGATTTCGCATGAATGTTGATACAAAATTTAGAATGTCTTGGGCTTTTGAAATTCATAGTACCTAAATTTTTA GAATGGTTTGTGCTTTTGAAATTCATTTCCAAAACTCAATTTTGATTTTGGTTGACCAAGGTAGAACCAATACTAAAGTT GTTTTCTTTTGCATTCGAATTGAAAAAGCATGTTTATCTGTTTTTTTTTTCCCCATGATTTTCACTGTTGTTTAAAAAGT CACATAATTCTATGGAGTTGAAAGCAGTCCAAATTGAATGCTCTTAAACTACAACTCTCAAAGGTTAAAGCTTTTTAACA TTGCACTGGTTACAGTCTGCAATTTGAGATTCTGGGTGGGAGAGTTTGACTCTTGAGTTATTGACTTGCTATTAACCACT TATTCAAACTTCAATTTCTTGCTTCAATTTTTATACAATGTGCTATGTGTTTGAGTCTCTTGTTTGTCTGTAAAGCTTGA TGATGCGATGCGTCTAATTGGTTTTGTAGGAACTTGCTATGAAGATGGAGTCAGGTTCTGTTTTTATTCCTGGTATTTAT GAGAATCAGCTTTCAAAGAGGCAAAAAATCAATGAGGGTCAAGACATTATAAGCAACCTACCTGACTTCATTATTGGTCA TATTCTTTCTTTTCTTTCTGCTAAAGATGCAGTCCGTACTAGTGTTCTGTCTAAACGTTGGATATGCTTGTGGACCTTTA TCACCAAGCTAAGGTTTGGGGATAGAGATCATAATTCTTCTCCAAAGAAAAGTAAAAGCAGCTTTTTAAACTTTGTGTAT AGAGTACTTCATCATCTGGATAGTTCAAGCATAGAAAGTTTTTCTCTTACTATATCAGAGAAGTATAATGCTTGTCATGT CAGTAAGTGGATATCTTCTGCTATAGATCGGAGTGTCAAAAAGGTCGGTGTCTATTCACGGAAAGAGTTGAACCTTTCCT TCCATTCCCTTTTCAAATGCCAGTCCTTGGAGGAATTGGTGTGGATGATGGATTGTTGTGTTAGCATAGTTCCAGTTCCC TCCTTTAGTTATTGTCTTTCATCCCTCACCGTCCTCAAGCTATCGGGAATAACATTTTCCTGCTGCAATTCTAATGGACC AAAATTTTCTAATGGACCAAAATTTTTGACCCTTAGTTTCCCAGTTCTTAGAAAGTATGAGACTAAAAATTGCACTTGGT CAGATGTGAAGGGTGTCACTCTAGATGTGCCTCTGCTTGAAGTGGTTTCAATAGAGTATAAACCTGTGTTGCTATGTGCT TCTTCATATACGAAAATTAAGTTTTGTGCCCCGCGTCTTACAGAATTCACTTATATTGGTTATATATTACCAGACACCCT TGTGTTAGATCTATCTAAAGCACATATCGCTTCTGCTAAAATTGTACCATACAAATATGCGGACGACACTGTGGAAGAGA CAGGGATTCTTGCTTGTAATTTTCTGAGACAATTCAATGCTAATGTAGAATGTCTGAAGCTTCAGCCGTCAAAGGTATGT ATCCTTGCATCACCCTTTGCTTACAATAGGGAAATTCTTGCCATATCAAACTCAATGTGTAACTAAATATTTTATTTGTA ATTTTATCTCAAAATGAGTGAAGAATATAGTTGAAACTTTTCAGTAGTCGCGTTTCTGTTTTATGTTCGGTGTTGGTCGC TTGTGTTGCAAACATTTTTGCACATAAGCTGATGAACATAGTGGTGAAAATTGTTTAATTCTTCTTTCCATTGACTTCGT TTTGTAGACAGTATTCTGACGGCGACAACATTAACATTCTTTTGTTCATTGTCATTCAGTTTCTTGCACATGCCAAAGAT TTTGTGGAGGATCTTCCTTCTTTTGAAATGTTGAGCCATCTGGAGCTAGACATAGTTACTGGTGAAATTCTTTTGGCCTT ACTTCAAAAGACTCCGTCTCTTAAGACTCTTGTTTTAAAGGTCAGTAATTTATTGATTGAAGCTCAGGTCTTATTCAAAT TTTTGCAGAAGCTTATACTACTGATAATCTTTGTCGAATTTATTTAGTTTTTCCGTCATATTATTTGGACTTTGCTGCGC AATATAATAATATGTATATTTGTTTATGATCATCAGAGAATCATTCAATTCGACATGGAACTGTTGAATTCTGCAAGTGT GCCTGATTGTTTTCTATCTACCCTGGAAATGGTGAAGTTTGGAAATTTTCATGGTAATGAGCATGAGTTAAATTTGGCAA AGTTTTTGATGGAAAATACTCTAGTCTTGGAGAGGCTGAGTGTTTTTCCAACTTGGATGCTGTTCGGGTTGAATTTGGAA AATGCTAAAGAAAAGCTCTTCTCATTTAGAAAAAGTTCTAACTTGGCGATTATAGAAATTTGCACCGTGTAAGTTACCAA TGTTTTACAGACCAAAAGAAAAAGTTACAGAAATTTTGAAGGGTCAGGAAGACAATGGGGGTTCATGCTTAGTGCATTTT GTTTTTGTACTGTGCCCTTGACATGGCATGGTTTTGGAGCTGGTGTTTGAAAGGAGCAGCGACGAAGTGGCTATGCAAGG CCTTGAAAAGGATTTCGAGAATCATCGGTTGTCTTGATCGTTTTTGGTATTTTGATCTTGCTCTCTTTGGGCTGTTTATT GCTGTGGAAGGGTTTCCTTTTATTCCTTTTGGCTTTGTTCCTGGGTACCTGATTTTGTATAGCTCTTTTGAGAGTATATG CTTAGGGTCCTGGTCGGGTTTTTCTTTTTTTGGGGGGTTCTGTAGAGATCCTCATTGATTAGCACTCTCTTTTTGGCGTT AATCTTCGCAATTGTACTTTTCTTGAGGGTTCATAATCAAAGGATTAGCATGCTTCTTCAAAAAGATAGTACTATATTTT ATTACCGATATAGTGAGCTTCAATGTCAAAAATAATGAATAGCCACTATGTGCTATTCTTTTGTCCAAGAATTCGAAAAT ATTTCGGAATTGCCG
CDS sequence (LotjaGi3g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGGAGTCAGGTTCTGTTTTTATTCCTGGTATTTATGAGAATCAGCTTTCAAAGAGGCAAAAAATCAATGAGGG TCAAGACATTATAAGCAACCTACCTGACTTCATTATTGGTCATATTCTTTCTTTTCTTTCTGCTAAAGATGCAGTCCGTA CTAGTGTTCTGTCTAAACGTTGGATATGCTTGTGGACCTTTATCACCAAGCTAAGGTTTGGGGATAGAGATCATAATTCT TCTCCAAAGAAAAGTAAAAGCAGCTTTTTAAACTTTGTGTATAGAGTACTTCATCATCTGGATAGTTCAAGCATAGAAAG TTTTTCTCTTACTATATCAGAGAAGTATAATGCTTGTCATGTCAGTAAGTGGATATCTTCTGCTATAGATCGGAGTGTCA AAAAGGTCGGTGTCTATTCACGGAAAGAGTTGAACCTTTCCTTCCATTCCCTTTTCAAATGCCAGTCCTTGGAGGAATTG GTGTGGATGATGGATTGTTGTGTTAGCATAGTTCCAGTTCCCTCCTTTAGTTATTGTCTTTCATCCCTCACCGTCCTCAA GCTATCGGGAATAACATTTTCCTGCTGCAATTCTAATGGACCAAAATTTTCTAATGGACCAAAATTTTTGACCCTTAGTT TCCCAGTTCTTAGAAAGTATGAGACTAAAAATTGCACTTGGTCAGATGTGAAGGGTGTCACTCTAGATGTGCCTCTGCTT GAAGTGGTTTCAATAGAGTATAAACCTGTGTTGCTATGTGCTTCTTCATATACGAAAATTAAGTTTTGTGCCCCGCGTCT TACAGAATTCACTTATATTGGTTATATATTACCAGACACCCTTGTGTTAGATCTATCTAAAGCACATATCGCTTCTGCTA AAATTGTACCATACAAATATGCGGACGACACTGTGGAAGAGACAGGGATTCTTGCTTGTAATTTTCTGAGACAATTCAAT GCTAATGTAGAATGTCTGAAGCTTCAGCCGTCAAAGTTTCTTGCACATGCCAAAGATTTTGTGGAGGATCTTCCTTCTTT TGAAATGTTGAGCCATCTGGAGCTAGACATAGTTACTGGTGAAATTCTTTTGGCCTTACTTCAAAAGACTCCGTCTCTTA AGACTCTTGTTTTAAAGAGAATCATTCAATTCGACATGGAACTGTTGAATTCTGCAAGTGTGCCTGATTGTTTTCTATCT ACCCTGGAAATGGTGAAGTTTGGAAATTTTCATGGTAATGAGCATGAGTTAAATTTGGCAAAGTTTTTGATGGAAAATAC TCTAGTCTTGGAGAGGCTGAGTGTTTTTCCAACTTGGATGCTGTTCGGGTTGAATTTGGAAAATGCTAAAGAAAAGCTCT TCTCATTTAGAAAAAGTTCTAACTTGGCGATTATAGAAATTTGCACCGTGTAA
Protein sequence (LotjaGi3g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMESGSVFIPGIYENQLSKRQKINEGQDIISNLPDFIIGHILSFLSAKDAVRTSVLSKRWICLWTFITKLRFGDRDHNS SPKKSKSSFLNFVYRVLHHLDSSSIESFSLTISEKYNACHVSKWISSAIDRSVKKVGVYSRKELNLSFHSLFKCQSLEEL VWMMDCCVSIVPVPSFSYCLSSLTVLKLSGITFSCCNSNGPKFSNGPKFLTLSFPVLRKYETKNCTWSDVKGVTLDVPLL EVVSIEYKPVLLCASSYTKIKFCAPRLTEFTYIGYILPDTLVLDLSKAHIASAKIVPYKYADDTVEETGILACNFLRQFN ANVECLKLQPSKFLAHAKDFVEDLPSFEMLSHLELDIVTGEILLALLQKTPSLKTLVLKRIIQFDMELLNSASVPDCFLS TLEMVKFGNFHGNEHELNLAKFLMENTLVLERLSVFPTWMLFGLNLENAKEKLFSFRKSSNLAIIEICTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 438 | 416 | 4.2E-99 | – | |
| PANTHER | 23 | 438 | 416 | 4.2E-99 | – | |
| SUPERFAMILY | 27 | 71 | 45 | 3.27E-11 | ||
| ProSiteProfiles | 28 | 61 | 34 | 8.835 | ||
| Pfam | 30 | 61 | 32 | 2.0E-5 | ||
| Pfam | 392 | 434 | 43 | 1.4E-13 | ||
| SMART | 396 | 465 | 70 | 0.0055 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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