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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0256900 |
Transcript ID | LotjaGi3g1v0256900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0R0H309|A0A0R0H309_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0256900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44302194..44305438) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAAACTTCAAAATCCCTTCTTTTCATTTCAGCTCTGCTCTGCCTCCTGCCCTACCACCACCTCACTGTCGATGCCCC GTCAGTTGGCGGCTCCGCCGTCGACCGTCGCTCAATCCACCGTCATGAGTCTGTCCCGGCCCTCTTCTACGGCACTCTCC CCCATGGGGCACCTTGCACATTTTCAACACAAGGTACTAGTTTTTCTTTCAGCTACATTGGGTTGCTTTGTTCCTTTGAT TTCGCATGAATGTTGATACAAAATTTAGAATGTCTTGGGCTTTTGAAATTCATAGTACCTAAATTTTTAGAATGGTTTGT GCTTTTGAAATTCATTTCCAAAACTCAATTTTGATTTTGGTTGACCAAGGTAGAACCAATACTAAAGTTGTTTTCTTTTG CATTCGAATTGAAAAAGCATGTTTATCTGTTTTTTTTTTCCCCATGATTTTCACTGTTGTTTAAAAAGTCACATAATTCT ATGGAGTTGAAAGCAGTCCAAATTGAATGCTCTTAAACTACAACTCTCAAAGGTTAAAGCTTTTTAACATTGCACTGGTT ACAGTCTGCAATTTGAGATTCTGGGTGGGAGAGTTTGACTCTTGAGTTATTGACTTGCTATTAACCACTTATTCAAACTT CAATTTCTTGCTTCAATTTTTATACAATGTGCTATGTGTTTGAGTCTCTTGTTTGTCTGTAAAGCTTGATGATGCGATGC GTCTAATTGGTTTTGTAGGAACTTGCTATGAAGATGGAGTCAGGTTCTGTTTTTATTCCTGGTATTTATGAGAATCAGCT TTCAAAGAGGCAAAAAATCAATGAGGGTCAAGACATTATAAGCAACCTACCTGACTTCATTATTGGTCATATTCTTTCTT TTCTTTCTGCTAAAGATGCAGTCCGTACTAGTGTTCTGTCTAAACGTTGGATATGCTTGTGGACCTTTATCACCAAGCTA AGGTTTGGGGATAGAGATCATAATTCTTCTCCAAAGAAAAGTAAAAGCAGCTTTTTAAACTTTGTGTATAGAGTACTTCA TCATCTGGATAGTTCAAGCATAGAAAGTTTTTCTCTTACTATATCAGAGAAGTATAATGCTTGTCATGTCAGTAAGTGGA TATCTTCTGCTATAGATCGGAGTGTCAAAAAGGTCGGTGTCTATTCACGGAAAGAGTTGAACCTTTCCTTCCATTCCCTT TTCAAATGCCAGTCCTTGGAGGAATTGGTGTGGATGATGGATTGTTGTGTTAGCATAGTTCCAGTTCCCTCCTTTAGTTA TTGTCTTTCATCCCTCACCGTCCTCAAGCTATCGGGAATAACATTTTCCTGCTGCAATTCTAATGGACCAAAATTTTCTA ATGGACCAAAATTTTTGACCCTTAGTTTCCCAGTTCTTAGAAAGTATGAGACTAAAAATTGCACTTGGTCAGATGTGAAG GGTGTCACTCTAGATGTGCCTCTGCTTGAAGTGGTTTCAATAGAGTATAAACCTGTGTTGCTATGTGCTTCTTCATATAC GAAAATTAAGTTTTGTGCCCCGCGTCTTACAGAATTCACTTATATTGGTTATATATTACCAGACACCCTTGTGTTAGATC TATCTAAAGCACATATCGCTTCTGCTAAAATTGTACCATACAAATATGCGGACGACACTGTGGAAGAGACAGGGATTCTT GCTTGTAATTTTCTGAGACAATTCAATGCTAATGTAGAATGTCTGAAGCTTCAGCCGTCAAAGGTATGTATCCTTGCATC ACCCTTTGCTTACAATAGGGAAATTCTTGCCATATCAAACTCAATGTGTAACTAAATATTTTATTTGTAATTTTATCTCA AAATGAGTGAAGAATATAGTTGAAACTTTTCAGTAGTCGCGTTTCTGTTTTATGTTCGGTGTTGGTCGCTTGTGTTGCAA ACATTTTTGCACATAAGCTGATGAACATAGTGGTGAAAATTGTTTAATTCTTCTTTCCATTGACTTCGTTTTGTAGACAG TATTCTGACGGCGACAACATTAACATTCTTTTGTTCATTGTCATTCAGTTTCTTGCACATGCCAAAGATTTTGTGGAGGA TCTTCCTTCTTTTGAAATGTTGAGCCATCTGGAGCTAGACATAGTTACTGGTGAAATTCTTTTGGCCTTACTTCAAAAGA CTCCGTCTCTTAAGACTCTTGTTTTAAAGGTCAGTAATTTATTGATTGAAGCTCAGGTCTTATTCAAATTTTTGCAGAAG CTTATACTACTGATAATCTTTGTCGAATTTATTTAGTTTTTCCGTCATATTATTTGGACTTTGCTGCGCAATATAATAAT ATGTATATTTGTTTATGATCATCAGAGAATCATTCAATTCGACATGGAACTGTTGAATTCTGCAAGTGTGCCTGATTGTT TTCTATCTACCCTGGAAATGGTGAAGTTTGGAAATTTTCATGGTAATGAGCATGAGTTAAATTTGGCAAAGTTTTTGATG GAAAATACTCTAGTCTTGGAGAGGCTGAGTGTTTTTCCAACTTGGATGCTGTTCGGGTTGAATTTGGAAAATGCTAAAGA AAAGCTCTTCTCATTTAGAAAAAGTTCTAACTTGGCGATTATAGAAATTTGCACCGTGTAAGTTACCAATGTTTTACAGA CCAAAAGAAAAAGTTACAGAAATTTTGAAGGGTCAGGAAGACAATGGGGGTTCATGCTTAGTGCATTTTGTTTTTGTACT GTGCCCTTGACATGGCATGGTTTTGGAGCTGGTGTTTGAAAGGAGCAGCGACGAAGTGGCTATGCAAGGCCTTGAAAAGG ATTTCGAGAATCATCGGTTGTCTTGATCGTTTTTGGTATTTTGATCTTGCTCTCTTTGGGCTGTTTATTGCTGTGGAAGG GTTTCCTTTTATTCCTTTTGGCTTTGTTCCTGGGTACCTGATTTTGTATAGCTCTTTTGAGAGTATATGCTTAGGGTCCT GGTCGGGTTTTTCTTTTTTTGGGGGGTTCTGTAGAGATCCTCATTGATTAGCACTCTCTTTTTGGCGTTAATCTTCGCAA TTGTACTTTTCTTGAGGGTTCATAATCAAAGGATTAGCATGCTTCTTCAAAAAGATAGTACTATATTTTATTACCGATAT AGTGAGCTTCAATGTCAAAAATAATGAATAGCCACTATGTGCTATTCTTTTGTCCAAGAATTCGAAAATATTTCGGAATT GCCGTAATTTTAAAAAGAAAATTATAGTAGTTAACTAAATATCTC
CDS sequence (LotjaGi3g1v0256900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCGTCAGTTGGCGGCTCCGCCGTCGACCGTCGCTCAATCCACCGTCATGAGTCTGTCCCGGCCCTCTTCTACGGC ACTCTCCCCCATGGGGCACCTTGCACATTTTCAACACAAGGAACTTGCTATGAAGATGGAGTCAGGTTCTGTTTTTATTC CTGGTATTTATGAGAATCAGCTTTCAAAGAGGCAAAAAATCAATGAGGGTCAAGACATTATAAGCAACCTACCTGACTTC ATTATTGGTCATATTCTTTCTTTTCTTTCTGCTAAAGATGCAGTCCGTACTAGTGTTCTGTCTAAACGTTGGATATGCTT GTGGACCTTTATCACCAAGCTAAGGTTTGGGGATAGAGATCATAATTCTTCTCCAAAGAAAAGTAAAAGCAGCTTTTTAA ACTTTGTGTATAGAGTACTTCATCATCTGGATAGTTCAAGCATAGAAAGTTTTTCTCTTACTATATCAGAGAAGTATAAT GCTTGTCATGTCAGTAAGTGGATATCTTCTGCTATAGATCGGAGTGTCAAAAAGGTCGGTGTCTATTCACGGAAAGAGTT GAACCTTTCCTTCCATTCCCTTTTCAAATGCCAGTCCTTGGAGGAATTGGTGTGGATGATGGATTGTTGTGTTAGCATAG TTCCAGTTCCCTCCTTTAGTTATTGTCTTTCATCCCTCACCGTCCTCAAGCTATCGGGAATAACATTTTCCTGCTGCAAT TCTAATGGACCAAAATTTTCTAATGGACCAAAATTTTTGACCCTTAGTTTCCCAGTTCTTAGAAAGTATGAGACTAAAAA TTGCACTTGGTCAGATGTGAAGGGTGTCACTCTAGATGTGCCTCTGCTTGAAGTGGTTTCAATAGAGTATAAACCTGTGT TGCTATGTGCTTCTTCATATACGAAAATTAAGTTTTGTGCCCCGCGTCTTACAGAATTCACTTATATTGGTTATATATTA CCAGACACCCTTGTGTTAGATCTATCTAAAGCACATATCGCTTCTGCTAAAATTGTACCATACAAATATGCGGACGACAC TGTGGAAGAGACAGGGATTCTTGCTTGTAATTTTCTGAGACAATTCAATGCTAATGTAGAATGTCTGAAGCTTCAGCCGT CAAAGTTTCTTGCACATGCCAAAGATTTTGTGGAGGATCTTCCTTCTTTTGAAATGTTGAGCCATCTGGAGCTAGACATA GTTACTGGTGAAATTCTTTTGGCCTTACTTCAAAAGACTCCGTCTCTTAAGACTCTTGTTTTAAAGAGAATCATTCAATT CGACATGGAACTGTTGAATTCTGCAAGTGTGCCTGATTGTTTTCTATCTACCCTGGAAATGGTGAAGTTTGGAAATTTTC ATGGTAATGAGCATGAGTTAAATTTGGCAAAGTTTTTGATGGAAAATACTCTAGTCTTGGAGAGGCTGAGTGTTTTTCCA ACTTGGATGCTGTTCGGGTTGAATTTGGAAAATGCTAAAGAAAAGCTCTTCTCATTTAGAAAAAGTTCTAACTTGGCGAT TATAGAAATTTGCACCGTGTAA
Protein sequence (LotjaGi3g1v0256900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRQLAAPPSTVAQSTVMSLSRPSSTALSPMGHLAHFQHKELAMKMESGSVFIPGIYENQLSKRQKINEGQDIISNLPDF IIGHILSFLSAKDAVRTSVLSKRWICLWTFITKLRFGDRDHNSSPKKSKSSFLNFVYRVLHHLDSSSIESFSLTISEKYN ACHVSKWISSAIDRSVKKVGVYSRKELNLSFHSLFKCQSLEELVWMMDCCVSIVPVPSFSYCLSSLTVLKLSGITFSCCN SNGPKFSNGPKFLTLSFPVLRKYETKNCTWSDVKGVTLDVPLLEVVSIEYKPVLLCASSYTKIKFCAPRLTEFTYIGYIL PDTLVLDLSKAHIASAKIVPYKYADDTVEETGILACNFLRQFNANVECLKLQPSKFLAHAKDFVEDLPSFEMLSHLELDI VTGEILLALLQKTPSLKTLVLKRIIQFDMELLNSASVPDCFLSTLEMVKFGNFHGNEHELNLAKFLMENTLVLERLSVFP TWMLFGLNLENAKEKLFSFRKSSNLAIIEICTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 65 | 480 | 416 | 5.5E-99 | – | |
PANTHER | 65 | 480 | 416 | 5.5E-99 | – | |
SUPERFAMILY | 70 | 114 | 45 | 3.4E-11 | ||
ProSiteProfiles | 71 | 104 | 34 | 8.835 | ||
Pfam | 73 | 104 | 32 | 2.2E-5 | ||
Pfam | 435 | 477 | 43 | 1.6E-13 | ||
SMART | 439 | 508 | 70 | 0.0055 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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