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LotjaGi3g1v0257100.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0257100
Transcript ID	LotjaGi3g1v0257100.2
Related isoforms 1	LotjaGi3g1v0257100.1
Lotus japonicus genome version	Gifu v1.2
Description	Bifunctional protein HldE; TAIR: AT1G17160.1 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp\|P44331\|RBSK_HAEIN Ribokinase; TrEMBL-Plants: tr\|A0A072VK36\|A0A072VK36_MEDTR Ribokinase; Found in the gene: LotjaGi3g1v0257100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:44402584..44403898) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTCTTATGCATACAGGCTGCAAGGAATGCTGGTGTACCAGTACTATTCGATTCCGGGGGCATGGATGCACCAATGCC ACCAGAATTGCTGAGTTATATTGATATTATAAGTCCTAATGAAACTGAACTTGGTCGCCTTACAGAAATGCCAACTGAAA AGTTTGAAGATATTACTCTGGCTGCTGCAAAATGCCATAAATTGGTGAGTTAAGTAGTACTTTACAATAAAATGCCTTTC ACATTCTGCTACTTGAATGGCATATTCATTGCCAAGGATATCTTAAGAAGAACAACATATTTCAATTCAAATATAACAAT TGAAAATCTTTGCTAGATGACAGGTTTGGAGTTTTATGTTGTTGGTTATCCGTCCCAAGTGTAGCTTGTGTATACATAGT TGCTAGATGACATCAATAGGGTCACTGCAGAAAGGGCGACCATTGTGTAGATATTTATTAAAGAATAGAGTTCCATCTAC AGAATTGTCCTATATATCCTTTTGTCTCTCTGAGCTGTTTAGTCTTCTTGACATTTACTTGCATGGTAGTTTCTTAATTT TTTATTTTGGGGGGTAGGGAGAATTGGCGCAACAGTTGAAGTTGCTGCCTTATGACTTGAAGGTCATGGCTTCGAGTCCC GGAATCAATTTCTTGCAAATATAAGGTAAGGCTGTGTCTTATAGACCCATATTGGGTTTTACCCTTCCCTAGATTTTATC ATGACGGAAGTGTTATAGCACTGGGTTACTTTTTTATTGTCTATTGATAACTTGAATATGCAATAGGTTTGATATTGTCC CAGAATTTTTCTTAAATGCCCTGGTTTATTCCTCAAGTCTGATAGATGAATGATGCTTTTGTCACTGACATTACAAGAAT CTCAGCGGTTCTAGTTCTGGTGTTACTTATTCCTTAATTTTCTGAAATTTCAGGGAGTTAAGCAAGTCCTCGTAAAACTT GGGGAGAAAGGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAGCAACCTGCCATATTTGCTGAAACAGTCATTGA TACAACTGGAGCTGGTGATACTTTTACTGCTGCTTTTGCTGTGGCAATAGTTGAGGGCAAGTCCAAAAAGGAATGCTTAA GATTTGCCGGTATGTATGGCTTAGTGCATTTCCCTCTTCCTTGTGGTATTTTTCTCTTTCTAAAATCGTAACTAACTATT CTATGATAACTTTTACGTGACAGCTGCTGCAGCTTCTCTTTGTGTTCAAGTGAAGGGAGCCATGCCTAGCATGCCTGATA GGAAATCTGTTCTGGATCTTCTTAGTTGTCATTGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0257100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCTTATGCATACAGGCTGCAAGGAATGCTGGTGTACCAGTACTATTCGATTCCGGGGGCATGGATGCACCAATGCC ACCAGAATTGCTGAGTTATATTGATATTATAAGTCCTAATGAAACTGAACTTGGTCGCCTTACAGAAATGCCAACTGAAA AGTTTGAAGATATTACTCTGGCTGCTGCAAAATGCCATAAATTGGGAGTTAAGCAAGTCCTCGTAAAACTTGGGGAGAAA GGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAGCAACCTGCCATATTTGCTGAAACAGTCATTGATACAACTGG AGCTGGTGATACTTTTACTGCTGCTTTTGCTGTGGCAATAGTTGAGGGCAAGTCCAAAAAGGAATGCTTAAGATTTGCCG CTGCTGCAGCTTCTCTTTGTGTTCAAGTGAAGGGAGCCATGCCTAGCATGCCTGATAGGAAATCTGTTCTGGATCTTCTT AGTTGTCATTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0257100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLLCIQAARNAGVPVLFDSGGMDAPMPPELLSYIDIISPNETELGRLTEMPTEKFEDITLAAAKCHKLGVKQVLVKLGEK GSALFIEGEEPIQQPAIFAETVIDTTGAGDTFTAAFAVAIVEGKSKKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLL SCH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53613 View details on SSF53613 Search for proteins/transripts with this domain View external data on SSF53613	2	160	159	3.27E-44	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.1190.20 View details on G3DSA:3.40.1190.20 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1190.20	2	161	160	5.1E-46	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10584 View details on PTHR10584 Search for proteins/transripts with this domain View external data on PTHR10584	4	162	159	2.2E-61	–
Pfam	PF00294 View details on PF00294 Search for proteins/transripts with this domain View external data on PF00294	4	152	149	4.4E-38	IPR011611 Show description in modal box View details on IPR011611 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00584 View details on PS00584 Search for proteins/transripts with this domain View external data on PS00584	104	117	14	-	IPR002173 Show description in modal box View details on IPR002173 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016773 View details of GO:0016773 AmiGO InterPro QuickGO	Molecular function	Phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).	Subterm of View details of GO:0016772

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0257100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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